Wall clock time and date at job start Tue Mar 31 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46893 * 2 1 4 4 H 1.08993 * 109.47296 * 178.31072 * 3 2 1 5 5 C 1.53002 * 109.46696 * 298.30991 * 3 2 1 6 6 C 1.52996 * 109.47142 * 295.58264 * 5 3 2 7 7 C 1.54890 * 110.75345 * 173.25875 * 6 5 3 8 8 C 1.54270 * 104.31439 * 156.32644 * 7 6 5 9 9 C 1.53887 * 106.59422 * 336.32601 * 8 7 6 10 10 C 1.54257 * 106.59791 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47129 * 58.30791 * 3 2 1 12 12 O 1.21296 * 120.00016 * 263.89781 * 11 3 2 13 13 N 1.34776 * 120.00045 * 83.90148 * 11 3 2 14 14 C 1.37097 * 120.00441 * 186.08224 * 13 11 3 15 15 H 1.08006 * 119.99776 * 357.25432 * 14 13 11 16 16 C 1.38939 * 120.00334 * 177.25297 * 14 13 11 17 17 N 1.31412 * 119.99995 * 331.01579 * 16 14 13 18 18 Si 1.86806 * 120.00217 * 151.01426 * 16 14 13 19 19 H 1.48503 * 109.46958 * 94.99640 * 18 16 14 20 20 H 1.48498 * 109.47127 * 214.99235 * 18 16 14 21 21 H 1.48496 * 109.46898 * 334.99436 * 18 16 14 22 22 C 1.46502 * 119.99841 * 6.07507 * 13 11 3 23 23 C 1.47201 * 109.47475 * 268.50448 * 22 13 11 24 24 N 3.56202 * 114.01265 * 110.96421 * 2 1 3 25 25 H 1.08989 * 109.47102 * 305.17770 * 1 2 3 26 26 H 1.08998 * 109.46799 * 65.18701 * 1 2 3 27 27 H 1.09004 * 109.46629 * 185.17715 * 1 2 3 28 28 H 1.08995 * 109.47183 * 240.00130 * 2 1 3 29 29 H 1.08996 * 109.46821 * 119.99550 * 2 1 3 30 30 H 1.09006 * 109.46726 * 175.58579 * 5 3 2 31 31 H 1.08995 * 109.47343 * 55.58778 * 5 3 2 32 32 H 1.08996 * 110.81649 * 49.92891 * 6 5 3 33 33 H 1.09000 * 110.48891 * 37.58490 * 7 6 5 34 34 H 1.08998 * 110.49275 * 275.07196 * 7 6 5 35 35 H 1.08999 * 110.03444 * 95.60344 * 8 7 6 36 36 H 1.09000 * 110.03696 * 217.04615 * 8 7 6 37 37 H 1.09001 * 110.03247 * 119.28355 * 9 8 7 38 38 H 1.09000 * 110.02759 * 240.66645 * 9 8 7 39 39 H 1.09001 * 110.48713 * 142.28722 * 10 9 8 40 40 H 1.09001 * 110.49094 * 264.80065 * 10 9 8 41 41 H 0.97003 * 120.00505 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.46999 * 28.50553 * 22 13 11 43 43 H 1.08997 * 109.47154 * 148.50208 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4428 0.0303 5 6 1.5650 2.1513 -1.2700 6 6 2.1980 1.4849 -2.4931 7 6 1.6090 2.0674 -3.8019 8 6 2.6962 1.7976 -4.8626 9 6 4.0272 1.6600 -4.1026 10 6 3.7024 1.8516 -2.6069 11 6 1.5037 2.1649 1.2089 12 8 0.5035 2.8446 1.1151 13 7 2.1355 2.0558 2.3944 14 6 1.5815 2.6089 3.5199 15 1 0.6614 3.1700 3.4491 16 6 2.2037 2.4476 4.7517 17 7 2.9315 1.3786 4.9853 18 14 2.0059 3.7503 6.0759 19 1 0.8957 3.3675 6.9848 20 1 3.2662 3.8612 6.8534 21 1 1.6985 5.0575 5.4421 22 6 3.4142 1.3461 2.4804 23 6 3.1689 -0.0707 2.7953 24 7 2.9796 -1.1641 3.0384 25 1 -0.3633 0.5920 0.8399 26 1 -0.3633 0.4313 -0.9328 27 1 -0.3633 -1.0235 0.0927 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8612 3.1997 -1.2334 31 1 0.4794 2.0827 -1.3400 32 1 2.0650 0.4037 -2.4574 33 1 1.4346 3.1384 -3.6983 34 1 0.6837 1.5549 -4.0651 35 1 2.4747 0.8742 -5.3978 36 1 2.7504 2.6316 -5.5624 37 1 4.4516 0.6699 -4.2691 38 1 4.7274 2.4266 -4.4343 39 1 4.3053 1.1793 -1.9964 40 1 3.8685 2.8871 -2.3100 41 1 3.3656 1.2657 5.8453 42 1 3.9363 1.4211 1.5264 43 1 4.0254 1.7922 3.2650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413304199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:43 Heat of formation + Delta-G solvation = -23.992177 kcal Electronic energy + Delta-G solvation = -22756.777992 eV Core-core repulsion = 19608.526455 eV Total energy + Delta-G solvation = -3148.251537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.56731 -38.05992 -35.87432 -34.87382 -34.06204 -31.79932 -30.43690 -28.67669 -27.74555 -27.11062 -24.90216 -23.67516 -21.64914 -20.25489 -19.61382 -18.25435 -17.87003 -16.41884 -16.14404 -15.90259 -14.98310 -14.78274 -14.55247 -14.25375 -13.95302 -13.31046 -13.11646 -12.97623 -12.74160 -12.52393 -12.29755 -11.88947 -11.64105 -11.58128 -11.32347 -11.28525 -11.19026 -11.05676 -11.01885 -10.82308 -10.63429 -10.52948 -10.42622 -10.41089 -10.27016 -10.19361 -10.08747 -9.74502 -9.15132 -8.41338 -8.09300 -6.54339 -3.89011 3.09732 3.23509 3.30464 3.60243 3.81124 4.00909 4.13488 4.58201 4.67649 4.72507 4.83862 4.92294 5.19801 5.27573 5.34450 5.47961 5.49553 5.58164 5.61982 5.63860 5.68050 5.78527 5.82124 5.86137 5.92601 6.03239 6.09719 6.13480 6.15636 6.24550 6.25777 6.34684 6.37754 6.44102 6.59621 6.61600 6.69161 6.74403 6.88849 7.47845 7.91405 8.31488 8.75661 9.03734 9.24816 9.79883 10.51491 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.004918 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.944603 B = 5692.168373 C = 5925.065826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.103 4.103 4 H 0.079 0.921 5 C -0.089 4.089 6 C -0.094 4.094 7 C -0.120 4.120 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.122 4.122 11 C 0.462 3.538 12 O -0.573 6.573 13 N -0.445 5.445 14 C -0.317 4.317 15 H 0.111 0.889 16 C 0.035 3.965 17 N -0.871 5.871 18 Si 0.916 3.084 19 H -0.280 1.280 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.213 3.787 23 C 0.251 3.749 24 N -0.476 5.476 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.273 0.727 42 H 0.084 0.916 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.174 0.839 -14.064 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.125 4.125 4 H 0.097 0.903 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.158 4.158 8 C -0.162 4.162 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.251 3.749 12 O -0.456 6.456 13 N -0.165 5.165 14 C -0.443 4.443 15 H 0.129 0.871 16 C -0.169 4.169 17 N -0.510 5.510 18 Si 0.742 3.258 19 H -0.206 1.206 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.086 3.914 23 C -0.067 4.067 24 N -0.156 5.156 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.102 0.898 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.503 -0.486 -13.574 14.027 hybrid contribution 0.150 0.796 0.913 1.221 sum 3.653 0.310 -12.660 13.181 Atomic orbital electron populations 1.21793 0.95540 1.00791 1.02663 1.21510 0.96894 0.94839 1.01998 1.21307 1.00594 0.95943 0.94654 0.90273 1.21373 1.01257 0.98756 0.91250 1.22313 0.94529 1.00224 0.94204 1.22405 0.97705 1.01101 0.94595 1.22126 0.95148 1.01023 0.97904 1.22126 0.97152 1.01194 0.95765 1.22527 0.96264 1.01665 0.95507 1.19979 0.85460 0.85294 0.84192 1.90524 1.26905 1.43294 1.84911 1.43756 1.18091 1.47124 1.07494 1.19696 1.10024 1.30391 0.84215 0.87121 1.25155 0.97040 0.96436 0.98243 1.69995 1.33446 1.22815 1.24741 0.86081 0.77790 0.81804 0.80084 1.20601 1.20670 1.19175 1.19074 0.88887 0.81486 1.01984 1.29312 0.92599 0.94425 0.90368 1.80899 1.08374 1.14647 1.11689 0.91549 0.92736 0.93731 0.91745 0.91670 0.91821 0.90771 0.90397 0.91574 0.91996 0.92277 0.92306 0.92221 0.92259 0.91715 0.91435 0.91670 0.89836 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.25 37.16 0.34 -2.25 16 2 C -0.11 -1.90 5.50 -26.73 -0.15 -2.05 16 3 C -0.10 -1.74 1.83 -91.77 -0.17 -1.91 16 4 H 0.08 1.19 5.45 -51.93 -0.28 0.90 16 5 C -0.09 -1.32 3.43 -26.73 -0.09 -1.41 16 6 C -0.09 -1.12 2.77 -88.43 -0.24 -1.37 16 7 C -0.12 -1.29 6.26 -25.07 -0.16 -1.45 16 8 C -0.12 -1.17 6.80 -25.60 -0.17 -1.34 16 9 C -0.12 -1.18 6.80 -25.61 -0.17 -1.36 16 10 C -0.12 -1.32 5.76 -24.88 -0.14 -1.47 16 11 C 0.46 10.13 5.63 -10.99 -0.06 10.07 16 12 O -0.57 -14.44 15.06 5.54 0.08 -14.36 16 13 N -0.44 -10.26 2.59 -117.93 -0.30 -10.57 16 14 C -0.32 -8.16 9.43 -14.94 -0.14 -8.30 16 15 H 0.11 3.05 7.32 -52.48 -0.38 2.66 16 16 C 0.03 0.85 4.88 -17.47 -0.09 0.77 16 17 N -0.87 -21.64 9.27 55.49 0.51 -21.13 16 18 Si 0.92 19.55 29.64 -169.99 -5.04 14.52 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 C 0.21 4.25 4.97 -6.83 -0.03 4.22 16 23 C 0.25 5.50 11.59 -20.76 -0.24 5.26 16 24 N -0.48 -11.16 18.24 42.15 0.77 -10.39 16 25 H 0.07 1.38 6.52 -51.94 -0.34 1.04 16 26 H 0.05 0.85 6.65 -51.93 -0.35 0.50 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.91 6.30 -51.93 -0.33 0.58 16 29 H 0.06 1.23 5.36 -51.93 -0.28 0.95 16 30 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 31 H 0.07 1.21 6.25 -51.93 -0.32 0.88 16 32 H 0.08 0.93 6.20 -51.93 -0.32 0.61 16 33 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 41 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.08 1.30 5.91 -51.93 -0.31 1.00 16 43 H 0.13 2.70 6.13 -51.93 -0.32 2.39 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -28.88 332.26 -7.05 -35.93 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.56 Total: 3.57 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.52 Total: -2.58 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.98 Total: -42.08 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.04 Total: 14.52 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.88 -7.05 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413304199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.940 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds