Wall clock time and date at job start Tue Mar 31 2020 00:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46893 * 2 1 4 4 H 1.08993 * 109.47296 * 178.31072 * 3 2 1 5 5 C 1.53002 * 109.46696 * 298.30991 * 3 2 1 6 6 C 1.52996 * 109.47142 * 295.58264 * 5 3 2 7 7 C 1.54890 * 110.75345 * 173.25875 * 6 5 3 8 8 C 1.54270 * 104.31439 * 156.32644 * 7 6 5 9 9 C 1.53887 * 106.59422 * 336.32601 * 8 7 6 10 10 C 1.54257 * 106.59791 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47129 * 58.30791 * 3 2 1 12 12 O 1.21296 * 120.00016 * 263.89781 * 11 3 2 13 13 N 1.34776 * 120.00045 * 83.90148 * 11 3 2 14 14 C 1.37097 * 120.00441 * 186.08224 * 13 11 3 15 15 H 1.08006 * 119.99776 * 357.25432 * 14 13 11 16 16 C 1.38939 * 120.00334 * 177.25297 * 14 13 11 17 17 N 1.31412 * 119.99995 * 331.01579 * 16 14 13 18 18 Si 1.86806 * 120.00217 * 151.01426 * 16 14 13 19 19 H 1.48503 * 109.46958 * 94.99640 * 18 16 14 20 20 H 1.48498 * 109.47127 * 214.99235 * 18 16 14 21 21 H 1.48496 * 109.46898 * 334.99436 * 18 16 14 22 22 C 1.46502 * 119.99841 * 6.07507 * 13 11 3 23 23 C 1.47201 * 109.47475 * 268.50448 * 22 13 11 24 24 N 3.56202 * 114.01265 * 110.96421 * 2 1 3 25 25 H 1.08989 * 109.47102 * 305.17770 * 1 2 3 26 26 H 1.08998 * 109.46799 * 65.18701 * 1 2 3 27 27 H 1.09004 * 109.46629 * 185.17715 * 1 2 3 28 28 H 1.08995 * 109.47183 * 240.00130 * 2 1 3 29 29 H 1.08996 * 109.46821 * 119.99550 * 2 1 3 30 30 H 1.09006 * 109.46726 * 175.58579 * 5 3 2 31 31 H 1.08995 * 109.47343 * 55.58778 * 5 3 2 32 32 H 1.08996 * 110.81649 * 49.92891 * 6 5 3 33 33 H 1.09000 * 110.48891 * 37.58490 * 7 6 5 34 34 H 1.08998 * 110.49275 * 275.07196 * 7 6 5 35 35 H 1.08999 * 110.03444 * 95.60344 * 8 7 6 36 36 H 1.09000 * 110.03696 * 217.04615 * 8 7 6 37 37 H 1.09001 * 110.03247 * 119.28355 * 9 8 7 38 38 H 1.09000 * 110.02759 * 240.66645 * 9 8 7 39 39 H 1.09001 * 110.48713 * 142.28722 * 10 9 8 40 40 H 1.09001 * 110.49094 * 264.80065 * 10 9 8 41 41 H 0.97003 * 120.00505 * 180.02562 * 17 16 14 42 42 H 1.09006 * 109.46999 * 28.50553 * 22 13 11 43 43 H 1.08997 * 109.47154 * 148.50208 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4428 0.0303 5 6 1.5650 2.1513 -1.2700 6 6 2.1980 1.4849 -2.4931 7 6 1.6090 2.0674 -3.8019 8 6 2.6962 1.7976 -4.8626 9 6 4.0272 1.6600 -4.1026 10 6 3.7024 1.8516 -2.6069 11 6 1.5037 2.1649 1.2089 12 8 0.5035 2.8446 1.1151 13 7 2.1355 2.0558 2.3944 14 6 1.5815 2.6089 3.5199 15 1 0.6614 3.1700 3.4491 16 6 2.2037 2.4476 4.7517 17 7 2.9315 1.3786 4.9853 18 14 2.0059 3.7503 6.0759 19 1 0.8957 3.3675 6.9848 20 1 3.2662 3.8612 6.8534 21 1 1.6985 5.0575 5.4421 22 6 3.4142 1.3461 2.4804 23 6 3.1689 -0.0707 2.7953 24 7 2.9796 -1.1641 3.0384 25 1 -0.3633 0.5920 0.8399 26 1 -0.3633 0.4313 -0.9328 27 1 -0.3633 -1.0235 0.0927 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8612 3.1997 -1.2334 31 1 0.4794 2.0827 -1.3400 32 1 2.0650 0.4037 -2.4574 33 1 1.4346 3.1384 -3.6983 34 1 0.6837 1.5549 -4.0651 35 1 2.4747 0.8742 -5.3978 36 1 2.7504 2.6316 -5.5624 37 1 4.4516 0.6699 -4.2691 38 1 4.7274 2.4266 -4.4343 39 1 4.3053 1.1793 -1.9964 40 1 3.8685 2.8871 -2.3100 41 1 3.3656 1.2657 5.8453 42 1 3.9363 1.4211 1.5264 43 1 4.0254 1.7922 3.2650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413304199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:41 Heat of formation + Delta-G solvation = -38.538212 kcal Electronic energy + Delta-G solvation = -22757.408755 eV Core-core repulsion = 19608.526455 eV Total energy + Delta-G solvation = -3148.882300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.12596 -39.13952 -37.61045 -36.41944 -35.71995 -33.66986 -31.56591 -29.54654 -29.29834 -28.52298 -26.55093 -24.96540 -23.07404 -21.04414 -20.75184 -19.88532 -19.51754 -18.05897 -17.83259 -16.91736 -16.56103 -16.10197 -15.99541 -15.49281 -15.46090 -14.75199 -14.57749 -14.20674 -14.06287 -13.89637 -13.74409 -13.58249 -13.33389 -13.09564 -12.94199 -12.84781 -12.41905 -12.35919 -12.16077 -12.08718 -12.01402 -11.82056 -11.79863 -11.68041 -11.43852 -11.18083 -11.13025 -11.04348 -10.94628 -10.17940 -9.96264 -8.43941 -5.84900 1.36326 1.47555 1.59640 1.86733 2.08850 2.28322 2.36661 2.95379 3.15058 3.60208 3.73325 3.79848 3.90929 4.03508 4.11622 4.13621 4.27684 4.44413 4.54045 4.62468 4.71099 4.74179 4.79826 4.84206 4.88617 4.93594 4.98798 4.99455 5.06026 5.09618 5.21812 5.25238 5.31056 5.32750 5.39304 5.46421 5.51087 5.54153 5.64629 5.71664 6.04212 6.43770 7.02502 7.16188 7.42048 8.00539 8.59944 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.004918 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.944603 B = 5692.168373 C = 5925.065826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.093 4.093 4 H 0.105 0.895 5 C -0.080 4.080 6 C -0.089 4.089 7 C -0.122 4.122 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.124 4.124 11 C 0.457 3.543 12 O -0.614 6.614 13 N -0.458 5.458 14 C -0.349 4.349 15 H 0.080 0.920 16 C 0.012 3.988 17 N -0.883 5.883 18 Si 0.975 3.025 19 H -0.287 1.287 20 H -0.266 1.266 21 H -0.272 1.272 22 C 0.214 3.786 23 C 0.262 3.738 24 N -0.506 5.506 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.276 0.724 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 0.454 -15.585 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.123 0.877 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.160 4.160 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.162 4.162 11 C 0.248 3.752 12 O -0.499 6.499 13 N -0.177 5.177 14 C -0.475 4.475 15 H 0.098 0.902 16 C -0.191 4.191 17 N -0.521 5.521 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.191 1.191 21 H -0.197 1.197 22 C 0.087 3.913 23 C -0.055 4.055 24 N -0.187 5.187 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.150 0.850 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.196 -0.887 -15.098 15.991 hybrid contribution -0.442 0.929 1.386 1.726 sum 4.753 0.042 -13.711 14.512 Atomic orbital electron populations 1.21746 0.96346 1.00757 1.01564 1.21516 0.96144 0.94479 1.02658 1.21319 1.01820 0.95544 0.92768 0.87725 1.21294 1.00356 0.98364 0.91802 1.22253 0.95329 1.00158 0.93018 1.22409 0.98417 1.00646 0.94487 1.22120 0.94481 1.01781 0.97576 1.22121 0.97312 1.01997 0.94589 1.22553 0.95260 1.01564 0.96804 1.20949 0.84740 0.84362 0.85195 1.90492 1.28768 1.44941 1.85735 1.43896 1.19166 1.47501 1.07178 1.19523 1.10156 1.31912 0.85958 0.90235 1.25702 0.96532 0.97469 0.99361 1.70051 1.33552 1.23244 1.25281 0.85226 0.77920 0.79280 0.77663 1.21299 1.19050 1.19650 1.19318 0.87670 0.79898 1.04401 1.29659 0.91718 0.94653 0.89474 1.80893 1.09247 1.15718 1.12794 0.95957 0.91134 0.92557 0.88100 0.93763 0.92850 0.92570 0.89755 0.92286 0.91712 0.91424 0.91606 0.91357 0.91538 0.91003 0.91929 0.91370 0.84992 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.25 71.98 0.67 -4.34 16 2 C -0.11 -3.47 5.50 30.60 0.17 -3.30 16 3 C -0.09 -3.01 1.83 -11.54 -0.02 -3.03 16 4 H 0.10 2.82 5.45 -2.39 -0.01 2.80 16 5 C -0.08 -2.30 3.43 30.59 0.10 -2.20 16 6 C -0.09 -1.89 2.77 -9.37 -0.03 -1.92 16 7 C -0.12 -2.34 6.26 31.67 0.20 -2.14 16 8 C -0.12 -1.92 6.80 31.32 0.21 -1.71 16 9 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 10 C -0.12 -2.31 5.76 31.80 0.18 -2.12 16 11 C 0.46 20.28 5.63 87.66 0.49 20.77 16 12 O -0.61 -32.13 15.06 -3.08 -0.05 -32.18 16 13 N -0.46 -21.30 2.59 -645.41 -1.67 -22.97 16 14 C -0.35 -18.43 9.43 84.04 0.79 -17.64 16 15 H 0.08 4.62 7.32 -2.91 -0.02 4.60 16 16 C 0.01 0.59 4.88 84.92 0.41 1.01 16 17 N -0.88 -43.55 9.27 21.66 0.20 -43.35 16 18 Si 0.97 40.32 29.64 68.60 2.03 42.35 16 19 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 C 0.21 8.28 4.97 84.57 0.42 8.70 16 23 C 0.26 11.27 11.59 89.44 1.04 12.31 16 24 N -0.51 -23.43 18.24 20.01 0.36 -23.07 16 25 H 0.02 0.93 6.52 -2.39 -0.02 0.91 16 26 H 0.07 2.14 6.65 -2.39 -0.02 2.12 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.10 2.48 6.30 -2.39 -0.02 2.46 16 29 H 0.04 1.60 5.36 -2.39 -0.01 1.59 16 30 H 0.05 1.63 7.96 -2.38 -0.02 1.61 16 31 H 0.06 1.81 6.25 -2.39 -0.01 1.80 16 32 H 0.08 1.70 6.20 -2.39 -0.01 1.69 16 33 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 40 H 0.06 1.23 7.93 -2.39 -0.02 1.21 16 41 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 42 H 0.13 3.74 5.91 -2.38 -0.01 3.73 16 43 H 0.13 5.07 6.13 -2.39 -0.01 5.05 16 Total: -1.00 -64.07 332.26 6.75 -57.32 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.01 Total: 19.19 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.86 Total: 2.70 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -1.10 Total: -89.38 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.05 Total: -32.18 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -64.07 6.75 -57.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413304199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.784 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds