Wall clock time and date at job start Tue Mar 31 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47207 * 2 1 4 4 H 1.08997 * 110.54186 * 52.38791 * 3 2 1 5 5 C 1.54257 * 110.48656 * 289.77011 * 3 2 1 6 6 C 1.53871 * 106.60191 * 217.71112 * 5 3 2 7 7 C 1.54259 * 106.59884 * 0.02562 * 6 5 3 8 8 C 1.54888 * 104.19515 * 23.60879 * 7 6 5 9 9 H 1.08998 * 110.91546 * 80.44816 * 8 7 6 10 10 C 1.50704 * 110.75657 * 203.74364 * 8 7 6 11 11 O 1.21285 * 119.99972 * 88.29373 * 10 8 7 12 12 N 1.34778 * 120.00078 * 268.29192 * 10 8 7 13 13 C 1.46498 * 119.99819 * 174.91178 * 12 10 8 14 14 C 1.50702 * 109.47399 * 90.00029 * 13 12 10 15 15 H 1.08008 * 119.99613 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00400 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99795 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00277 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46885 * 60.00446 * 18 16 14 20 20 H 1.48500 * 109.47215 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47166 * 300.00731 * 18 16 14 22 22 C 1.46500 * 119.99663 * 354.90721 * 12 10 8 23 23 C 1.52995 * 109.47456 * 274.97342 * 22 12 10 24 24 C 1.47197 * 109.47498 * 180.02562 * 23 22 12 25 25 N 6.23542 * 157.00257 * 209.89363 * 2 1 3 26 26 H 1.09001 * 109.47138 * 60.00247 * 1 2 3 27 27 H 1.08994 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47047 * 300.00405 * 1 2 3 29 29 H 1.09002 * 109.47047 * 239.99595 * 2 1 3 30 30 H 1.09001 * 109.47138 * 119.99753 * 2 1 3 31 31 H 1.08999 * 110.03665 * 337.00031 * 5 3 2 32 32 H 1.09008 * 110.02827 * 98.38094 * 5 3 2 33 33 H 1.09002 * 110.03577 * 119.28743 * 6 5 3 34 34 H 1.09003 * 110.03550 * 240.71605 * 6 5 3 35 35 H 1.09005 * 110.48742 * 264.92854 * 7 6 5 36 36 H 1.09000 * 110.49183 * 142.28421 * 7 6 5 37 37 H 1.09006 * 109.46719 * 209.99598 * 13 12 10 38 38 H 1.08996 * 109.47677 * 329.99629 * 13 12 10 39 39 H 0.97000 * 120.00230 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47332 * 34.97779 * 22 12 10 41 41 H 1.09003 * 109.46564 * 154.97558 * 22 12 10 42 42 H 1.09002 * 109.47224 * 300.00564 * 23 22 12 43 43 H 1.09001 * 109.47306 * 60.00045 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7592 2.1144 -1.3598 6 6 2.9738 3.0072 -1.6683 7 6 3.9508 2.8461 -0.4854 8 6 3.5838 1.4711 0.1259 9 1 4.0334 0.6589 -0.4453 10 6 4.0029 1.4004 1.5717 11 8 3.2473 1.7795 2.4414 12 7 5.2174 0.9157 1.8984 13 6 5.6691 0.9498 3.2916 14 6 5.2537 -0.3218 3.9856 15 1 4.7075 -1.0794 3.4432 16 6 5.5710 -0.5181 5.3129 17 7 6.2357 0.4046 5.9735 18 14 5.0556 -2.0940 6.1733 19 1 5.6668 -3.2578 5.4825 20 1 5.5147 -2.0600 7.5852 21 1 3.5762 -2.2172 6.1360 22 6 6.0856 0.3549 0.8602 23 6 5.7238 -1.1140 0.6314 24 6 6.5966 -1.6777 -0.4112 25 7 7.2698 -2.1120 -1.2141 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6466 1.3563 -2.1348 32 1 0.8555 2.7208 -1.2971 33 1 3.4509 2.6823 -2.5930 34 1 2.6602 4.0475 -1.7550 35 1 3.7997 3.6410 0.2451 36 1 4.9816 2.8432 -0.8396 37 1 6.7550 1.0408 3.3193 38 1 5.2199 1.8038 3.7985 39 1 6.4593 0.2664 6.9072 40 1 5.9494 0.9113 -0.0670 41 1 7.1257 0.4276 1.1782 42 1 5.8600 -1.6705 1.5588 43 1 4.6837 -1.1868 0.3136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448771464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:00 Heat of formation + Delta-G solvation = -39.043075 kcal Electronic energy + Delta-G solvation = -22551.790972 eV Core-core repulsion = 19402.886779 eV Total energy + Delta-G solvation = -3148.904193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.94877 -37.54078 -36.70296 -35.16010 -33.13936 -32.80570 -30.75545 -29.48243 -27.53130 -27.05453 -23.99514 -23.40463 -22.45073 -20.76260 -19.62279 -18.42142 -17.48979 -16.76938 -16.26413 -15.84546 -15.14617 -14.68480 -14.48959 -14.32585 -14.16897 -13.65862 -13.59491 -13.16362 -12.96526 -12.67377 -12.51100 -12.31445 -12.23317 -11.88066 -11.67908 -11.60018 -11.30282 -11.22017 -11.08325 -11.01757 -10.83275 -10.59303 -10.53891 -10.37040 -10.32623 -10.30361 -10.13117 -9.67158 -8.87443 -8.46434 -7.81117 -6.08029 -4.12868 2.83219 2.93416 3.29213 3.32358 3.34931 3.38763 3.74373 4.27060 4.41812 4.56596 4.71375 4.79614 5.07763 5.18184 5.24289 5.27813 5.28209 5.38439 5.42504 5.46234 5.53619 5.60556 5.65774 5.71679 5.77204 5.90993 5.93199 5.96263 6.01616 6.09039 6.19265 6.22386 6.26049 6.31640 6.44432 6.61991 6.99604 7.38449 7.46732 7.68134 7.87495 8.17929 8.32016 8.85600 9.03775 9.52614 11.00103 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.005980 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.511199 B = 4681.497661 C = 5342.847108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.076 4.076 4 H 0.092 0.908 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.109 4.109 8 C -0.117 4.117 9 H 0.091 0.909 10 C 0.516 3.484 11 O -0.530 6.530 12 N -0.599 5.599 13 C 0.245 3.755 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.124 3.876 23 C -0.055 4.055 24 C 0.220 3.780 25 N -0.452 5.452 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.129 0.871 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 2.272 -14.289 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.095 4.095 4 H 0.110 0.890 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.139 4.139 9 H 0.109 0.891 10 C 0.302 3.698 11 O -0.406 6.406 12 N -0.330 5.330 13 C 0.126 3.874 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.096 4.096 24 C -0.098 4.098 25 N -0.130 5.130 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.146 0.854 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.411 1.889 -14.803 15.873 hybrid contribution -0.406 -0.871 0.935 1.341 sum -5.817 1.018 -13.867 15.072 Atomic orbital electron populations 1.21742 0.95978 1.01231 1.01684 1.21570 0.95946 0.96113 1.01927 1.21941 0.93121 0.96548 0.97846 0.89000 1.22218 0.97885 0.98529 0.96980 1.22110 0.96002 0.99863 0.97968 1.22258 0.99144 0.95949 0.97376 1.22471 0.97606 0.99308 0.94504 0.89088 1.20218 0.81580 0.77960 0.90008 1.90673 1.51004 1.48256 1.50653 1.48229 1.15831 1.58756 1.10214 1.19340 0.95055 0.98336 0.74627 1.21377 1.36331 1.02986 0.95838 0.92268 1.24917 0.95029 0.96780 0.97219 1.69909 1.39368 1.33708 1.10257 0.86625 0.79156 0.83410 0.78644 1.20226 1.21255 1.20160 1.21249 0.96363 0.90432 0.92241 1.20030 0.96638 0.98213 0.94753 1.29181 0.93698 0.93202 0.93714 1.81105 1.10481 1.09605 1.11772 0.93028 0.93118 0.92562 0.92326 0.91470 0.91865 0.91934 0.91925 0.91865 0.90921 0.91321 0.94897 0.93869 0.92643 0.90952 0.89420 0.85354 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.79 37.16 0.36 -1.25 16 2 C -0.12 -1.42 5.32 -26.73 -0.14 -1.56 16 3 C -0.08 -0.96 2.16 -88.95 -0.19 -1.15 16 4 H 0.09 1.41 7.24 -51.93 -0.38 1.03 16 5 C -0.12 -1.19 5.69 -25.62 -0.15 -1.34 16 6 C -0.12 -1.17 6.80 -25.62 -0.17 -1.35 16 7 C -0.11 -1.27 6.19 -25.08 -0.16 -1.42 16 8 C -0.12 -1.56 1.75 -89.76 -0.16 -1.71 16 9 H 0.09 1.04 5.55 -51.93 -0.29 0.75 16 10 C 0.52 9.45 6.79 -10.98 -0.07 9.37 16 11 O -0.53 -12.22 15.47 5.55 0.09 -12.13 16 12 N -0.60 -10.98 2.47 -175.06 -0.43 -11.41 16 13 C 0.25 5.82 5.16 -5.19 -0.03 5.79 16 14 C -0.53 -13.60 9.18 -34.44 -0.32 -13.92 16 15 H 0.06 1.48 7.41 -52.48 -0.39 1.09 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 18 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.12 1.69 5.02 -4.04 -0.02 1.67 16 23 C -0.06 -0.69 5.80 -29.52 -0.17 -0.86 16 24 C 0.22 2.94 15.43 -20.82 -0.32 2.62 16 25 N -0.45 -7.05 18.53 42.08 0.78 -6.27 16 26 H 0.05 0.49 7.62 -51.93 -0.40 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.58 7.71 -51.93 -0.40 0.17 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.95 8.04 -51.93 -0.42 0.54 16 36 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 37 H 0.03 0.79 7.86 -51.93 -0.41 0.38 16 38 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.07 0.80 6.22 -51.93 -0.32 0.48 16 41 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 42 H 0.13 1.82 7.53 -51.93 -0.39 1.43 16 43 H 0.10 1.16 7.24 -51.93 -0.38 0.78 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -30.94 351.83 -7.23 -38.17 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.05 Total: -1.31 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.63 Total: -3.51 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 1.08 Total: -42.37 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.94 -7.23 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.875 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds