Wall clock time and date at job start Tue Mar 31 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47207 * 2 1 4 4 H 1.08997 * 110.54186 * 52.38791 * 3 2 1 5 5 C 1.54257 * 110.48656 * 289.77011 * 3 2 1 6 6 C 1.53871 * 106.60191 * 217.71112 * 5 3 2 7 7 C 1.54259 * 106.59884 * 0.02562 * 6 5 3 8 8 C 1.54888 * 104.19515 * 23.60879 * 7 6 5 9 9 H 1.08998 * 110.91546 * 80.44816 * 8 7 6 10 10 C 1.50704 * 110.75657 * 203.74364 * 8 7 6 11 11 O 1.21285 * 119.99972 * 88.29373 * 10 8 7 12 12 N 1.34778 * 120.00078 * 268.29192 * 10 8 7 13 13 C 1.46498 * 119.99819 * 174.91178 * 12 10 8 14 14 C 1.50702 * 109.47399 * 90.00029 * 13 12 10 15 15 H 1.08008 * 119.99613 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00400 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99795 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00277 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46885 * 60.00446 * 18 16 14 20 20 H 1.48500 * 109.47215 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47166 * 300.00731 * 18 16 14 22 22 C 1.46500 * 119.99663 * 354.90721 * 12 10 8 23 23 C 1.52995 * 109.47456 * 274.97342 * 22 12 10 24 24 C 1.47197 * 109.47498 * 180.02562 * 23 22 12 25 25 N 6.23542 * 157.00257 * 209.89363 * 2 1 3 26 26 H 1.09001 * 109.47138 * 60.00247 * 1 2 3 27 27 H 1.08994 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47047 * 300.00405 * 1 2 3 29 29 H 1.09002 * 109.47047 * 239.99595 * 2 1 3 30 30 H 1.09001 * 109.47138 * 119.99753 * 2 1 3 31 31 H 1.08999 * 110.03665 * 337.00031 * 5 3 2 32 32 H 1.09008 * 110.02827 * 98.38094 * 5 3 2 33 33 H 1.09002 * 110.03577 * 119.28743 * 6 5 3 34 34 H 1.09003 * 110.03550 * 240.71605 * 6 5 3 35 35 H 1.09005 * 110.48742 * 264.92854 * 7 6 5 36 36 H 1.09000 * 110.49183 * 142.28421 * 7 6 5 37 37 H 1.09006 * 109.46719 * 209.99598 * 13 12 10 38 38 H 1.08996 * 109.47677 * 329.99629 * 13 12 10 39 39 H 0.97000 * 120.00230 * 180.02562 * 17 16 14 40 40 H 1.08992 * 109.47332 * 34.97779 * 22 12 10 41 41 H 1.09003 * 109.46564 * 154.97558 * 22 12 10 42 42 H 1.09002 * 109.47224 * 300.00564 * 23 22 12 43 43 H 1.09001 * 109.47306 * 60.00045 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 0.8085 5 6 1.7592 2.1144 -1.3598 6 6 2.9738 3.0072 -1.6683 7 6 3.9508 2.8461 -0.4854 8 6 3.5838 1.4711 0.1259 9 1 4.0334 0.6589 -0.4453 10 6 4.0029 1.4004 1.5717 11 8 3.2473 1.7795 2.4414 12 7 5.2174 0.9157 1.8984 13 6 5.6691 0.9498 3.2916 14 6 5.2537 -0.3218 3.9856 15 1 4.7075 -1.0794 3.4432 16 6 5.5710 -0.5181 5.3129 17 7 6.2357 0.4046 5.9735 18 14 5.0556 -2.0940 6.1733 19 1 5.6668 -3.2578 5.4825 20 1 5.5147 -2.0600 7.5852 21 1 3.5762 -2.2172 6.1360 22 6 6.0856 0.3549 0.8602 23 6 5.7238 -1.1140 0.6314 24 6 6.5966 -1.6777 -0.4112 25 7 7.2698 -2.1120 -1.2141 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6466 1.3563 -2.1348 32 1 0.8555 2.7208 -1.2971 33 1 3.4509 2.6823 -2.5930 34 1 2.6602 4.0475 -1.7550 35 1 3.7997 3.6410 0.2451 36 1 4.9816 2.8432 -0.8396 37 1 6.7550 1.0408 3.3193 38 1 5.2199 1.8038 3.7985 39 1 6.4593 0.2664 6.9072 40 1 5.9494 0.9113 -0.0670 41 1 7.1257 0.4276 1.1782 42 1 5.8600 -1.6705 1.5588 43 1 4.6837 -1.1868 0.3136 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448771464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:59 Heat of formation + Delta-G solvation = -55.919431 kcal Electronic energy + Delta-G solvation = -22552.522786 eV Core-core repulsion = 19402.886779 eV Total energy + Delta-G solvation = -3149.636007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25223 -38.67846 -37.93079 -36.64189 -34.80854 -33.98909 -32.15076 -30.66697 -28.75807 -28.41332 -25.22644 -25.11216 -23.50857 -21.88728 -20.55943 -19.72298 -18.91353 -18.17466 -17.90729 -17.23582 -16.39416 -16.08412 -15.75633 -15.64361 -15.27035 -14.94957 -14.71282 -14.24867 -14.10559 -13.99966 -13.74818 -13.71861 -13.50276 -13.21488 -12.93408 -12.89546 -12.72397 -12.63900 -12.50684 -12.19975 -12.07406 -11.95007 -11.79582 -11.59906 -11.48378 -11.35499 -11.23859 -11.13017 -10.55448 -10.40558 -9.45522 -8.14602 -6.26553 1.42072 1.45278 1.51296 1.68122 1.85074 1.96608 2.31481 2.47811 3.13219 3.17237 3.58887 3.76628 3.80896 4.01046 4.16049 4.23217 4.35926 4.40154 4.48765 4.54374 4.55084 4.65274 4.78318 4.81471 4.84887 4.89936 5.02035 5.08130 5.11268 5.13761 5.20721 5.28540 5.32427 5.33420 5.39936 5.47282 5.56043 5.64840 5.68260 5.91516 6.14991 6.60143 6.78810 6.86144 7.38426 7.57918 8.92570 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.005980 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.511199 B = 4681.497661 C = 5342.847108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.078 4.078 4 H 0.054 0.946 5 C -0.112 4.112 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.108 4.108 9 H 0.121 0.879 10 C 0.511 3.489 11 O -0.589 6.589 12 N -0.600 5.600 13 C 0.260 3.740 14 C -0.530 4.530 15 H 0.065 0.935 16 C 0.008 3.992 17 N -0.931 5.931 18 Si 0.956 3.044 19 H -0.258 1.258 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.118 3.882 23 C -0.044 4.044 24 C 0.247 3.753 25 N -0.484 5.484 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.027 0.973 38 H -0.005 1.005 39 H 0.263 0.737 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 1.027 -17.352 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.097 4.097 4 H 0.073 0.927 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.148 4.148 8 C -0.130 4.130 9 H 0.139 0.861 10 C 0.300 3.700 11 O -0.469 6.469 12 N -0.330 5.330 13 C 0.138 3.862 14 C -0.568 4.568 15 H 0.084 0.916 16 C -0.190 4.190 17 N -0.571 5.571 18 Si 0.781 3.219 19 H -0.183 1.183 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.007 4.007 23 C -0.085 4.085 24 C -0.070 4.070 25 N -0.162 5.162 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.013 0.987 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.750 0.624 -17.917 18.827 hybrid contribution -0.303 -0.422 1.912 1.982 sum -6.053 0.202 -16.004 17.112 Atomic orbital electron populations 1.21729 0.95244 1.01818 1.01684 1.21577 0.96694 0.95464 1.01723 1.21921 0.92354 0.96938 0.98510 0.92743 1.22194 0.98353 0.98990 0.95403 1.22106 0.95146 1.00371 0.97670 1.22311 1.01088 0.93815 0.97625 1.22524 0.98310 1.01485 0.90632 0.86103 1.21194 0.80614 0.76250 0.91915 1.90645 1.52730 1.50586 1.52915 1.48137 1.16703 1.59050 1.09116 1.18801 0.94033 0.95760 0.77567 1.21733 1.35430 1.03526 0.96136 0.91639 1.25761 0.95226 0.99846 0.98208 1.70040 1.40929 1.35691 1.10476 0.85639 0.78426 0.80256 0.77553 1.18287 1.21277 1.20458 1.21528 0.95548 0.91437 0.92153 1.19893 0.97686 0.96940 0.93995 1.28996 0.92777 0.92283 0.92925 1.81153 1.11468 1.10598 1.12982 0.91121 0.92232 0.94497 0.89618 0.94378 0.89683 0.91579 0.89506 0.91224 0.93465 0.89341 0.95549 0.98682 0.92766 0.87252 0.89314 0.86799 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.79 71.98 0.70 -2.26 16 2 C -0.12 -2.60 5.32 30.59 0.16 -2.44 16 3 C -0.08 -1.89 2.16 -9.71 -0.02 -1.91 16 4 H 0.05 1.73 7.24 -2.39 -0.02 1.71 16 5 C -0.11 -1.87 5.69 31.31 0.18 -1.69 16 6 C -0.12 -1.79 6.80 31.32 0.21 -1.57 16 7 C -0.11 -2.31 6.19 31.67 0.20 -2.11 16 8 C -0.11 -2.67 1.75 -10.24 -0.02 -2.69 16 9 H 0.12 2.25 5.55 -2.39 -0.01 2.24 16 10 C 0.51 18.95 6.79 87.66 0.60 19.55 16 11 O -0.59 -28.72 15.47 -3.04 -0.05 -28.77 16 12 N -0.60 -22.07 2.47 -826.15 -2.04 -24.11 16 13 C 0.26 12.80 5.16 85.63 0.44 13.25 16 14 C -0.53 -27.91 9.18 25.60 0.23 -27.68 16 15 H 0.07 3.29 7.41 -2.91 -0.02 3.27 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -54.61 13.29 21.45 0.28 -54.33 16 18 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.12 2.98 5.02 86.38 0.43 3.41 16 23 C -0.04 -0.99 5.80 28.79 0.17 -0.83 16 24 C 0.25 5.91 15.43 89.46 1.38 7.29 16 25 N -0.48 -13.88 18.53 19.98 0.37 -13.51 16 26 H 0.07 1.14 7.62 -2.39 -0.02 1.13 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 1.44 7.95 -2.39 -0.02 1.42 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.11 7.71 -2.39 -0.02 1.09 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 1.23 8.04 -2.38 -0.02 1.21 16 36 H 0.09 1.50 7.79 -2.39 -0.02 1.48 16 37 H 0.03 1.32 7.86 -2.38 -0.02 1.31 16 38 H 0.00 -0.29 7.50 -2.39 -0.02 -0.31 16 39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.11 2.00 6.22 -2.39 -0.01 1.98 16 41 H 0.09 2.26 7.84 -2.39 -0.02 2.24 16 42 H 0.11 3.05 7.53 -2.39 -0.02 3.03 16 43 H 0.13 2.36 7.24 -2.39 -0.02 2.34 16 Total: -1.00 -71.18 351.83 6.71 -64.47 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.98 Total: 9.82 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.13 Total: 1.22 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -1.38 Total: -91.94 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.05 Total: -28.77 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -71.18 6.71 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.552 kcal (2) G-P(sol) polarization free energy of solvation -71.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds