Wall clock time and date at job start Tue Mar 31 2020 00:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47021 * 2 1 4 4 H 1.08998 * 110.05637 * 53.81157 * 3 2 1 5 5 C 1.54265 * 110.03268 * 292.39751 * 3 2 1 6 6 C 1.54893 * 104.19405 * 217.10441 * 5 3 2 7 7 C 1.54888 * 102.74754 * 37.94419 * 6 5 3 8 8 C 1.53875 * 110.03273 * 175.22944 * 3 2 1 9 9 H 1.08997 * 110.07337 * 238.59116 * 8 3 2 10 10 C 1.50695 * 110.03183 * 0.02562 * 8 3 2 11 11 O 1.21281 * 120.00522 * 91.21598 * 10 8 3 12 12 N 1.34777 * 120.00068 * 271.21633 * 10 8 3 13 13 C 1.46507 * 120.00039 * 175.14235 * 12 10 8 14 14 C 1.50698 * 109.46998 * 90.00337 * 13 12 10 15 15 H 1.08001 * 120.00035 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00320 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99757 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47228 * 269.99836 * 18 16 14 20 20 H 1.48503 * 109.47357 * 29.99888 * 18 16 14 21 21 H 1.48501 * 109.47051 * 149.99727 * 18 16 14 22 22 C 1.46503 * 120.00018 * 355.14466 * 12 10 8 23 23 C 1.53000 * 109.47111 * 274.86992 * 22 12 10 24 24 C 1.47196 * 109.47018 * 184.89322 * 23 22 12 25 25 N 6.60224 * 119.34839 * 68.48125 * 2 1 3 26 26 H 1.09004 * 109.46947 * 299.99859 * 1 2 3 27 27 H 1.09001 * 109.47693 * 59.99769 * 1 2 3 28 28 H 1.09002 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47013 * 239.99872 * 2 1 3 30 30 H 1.09002 * 109.47321 * 119.99550 * 2 1 3 31 31 H 1.08994 * 110.48815 * 98.42913 * 5 3 2 32 32 H 1.08999 * 110.60219 * 335.83689 * 5 3 2 33 33 H 1.08996 * 110.75718 * 279.62370 * 6 5 3 34 34 H 1.09003 * 110.91140 * 156.32806 * 6 5 3 35 35 H 1.09002 * 110.48494 * 203.37493 * 7 6 5 36 36 H 1.08998 * 110.60047 * 80.78918 * 7 6 5 37 37 H 1.08993 * 109.47024 * 330.00229 * 13 12 10 38 38 H 1.09005 * 109.46705 * 210.00037 * 13 12 10 39 39 H 0.97000 * 119.99857 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47046 * 34.86767 * 22 12 10 41 41 H 1.09002 * 109.46873 * 154.86943 * 22 12 10 42 42 H 1.08996 * 109.46997 * 304.89373 * 23 22 12 43 43 H 1.09003 * 109.47054 * 64.89235 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5946 1.9964 0.8263 5 6 1.6954 2.1248 -1.3400 6 6 2.9227 3.0223 -1.6358 7 6 4.1080 2.1511 -1.1509 8 6 3.5739 1.4593 0.1202 9 1 3.8737 2.0209 1.0050 10 6 4.1008 0.0497 0.2003 11 8 4.4161 -0.5383 -0.8125 12 7 4.2219 -0.5575 1.3974 13 6 4.6325 -1.9621 1.4681 14 6 6.1346 -2.0423 1.5584 15 1 6.7245 -1.1377 1.5622 16 6 6.7559 -3.2706 1.6361 17 7 8.0669 -3.3407 1.7143 18 14 5.7357 -4.8355 1.6287 19 1 5.3834 -5.2033 3.0236 20 1 4.4931 -4.6126 0.8467 21 1 6.5196 -5.9345 1.0099 22 6 3.9428 0.1869 2.6279 23 6 5.1966 0.9517 3.0568 24 6 4.9535 1.6047 4.3534 25 7 4.7659 2.1109 5.3537 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.7951 2.7308 -1.2391 32 1 1.5678 1.3817 -2.1271 33 1 2.8680 3.9510 -1.0677 34 1 3.0059 3.2283 -2.7029 35 1 4.9684 2.7764 -0.9121 36 1 4.3735 1.4106 -1.9054 37 1 4.2937 -2.4851 0.5739 38 1 4.1902 -2.4259 2.3499 39 1 8.5040 -4.2050 1.7686 40 1 3.1305 0.8916 2.4499 41 1 3.6542 -0.5088 3.4159 42 1 6.0314 0.2572 3.1506 43 1 5.4350 1.7075 2.3084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448771467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:03 Heat of formation + Delta-G solvation = -29.296434 kcal Electronic energy + Delta-G solvation = -22816.441617 eV Core-core repulsion = 19667.960070 eV Total energy + Delta-G solvation = -3148.481547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32604 -37.45127 -36.65269 -35.25758 -33.07662 -32.75496 -30.91843 -29.64321 -27.67620 -27.40230 -24.03463 -23.11193 -22.48879 -20.60308 -20.18021 -18.01955 -17.45659 -16.78912 -16.62708 -15.85897 -15.51911 -14.70513 -14.53031 -14.45652 -14.23876 -13.72560 -13.50751 -13.20242 -12.98952 -12.63207 -12.46382 -12.37700 -12.29486 -11.87270 -11.77123 -11.65130 -11.41392 -11.19934 -11.04176 -10.97404 -10.80998 -10.72397 -10.55439 -10.50449 -10.41395 -10.29161 -10.14017 -9.54932 -8.97842 -8.62926 -7.86674 -6.12803 -4.11853 2.82980 2.94487 3.24177 3.28477 3.32972 3.35989 3.64277 4.26032 4.36224 4.55274 4.64411 4.73320 5.01736 5.14782 5.21263 5.23314 5.26534 5.30926 5.38034 5.50736 5.55224 5.59324 5.60813 5.68599 5.75249 5.87235 5.91056 5.93233 6.06369 6.07726 6.17141 6.22567 6.26022 6.34758 6.48132 6.51587 6.61734 6.91860 7.24329 7.56319 7.70209 8.13906 8.41048 8.87587 8.92790 9.47754 11.00075 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.006525 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.095344 B = 4290.465436 C = 5160.253533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.075 4.075 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.117 4.117 9 H 0.088 0.912 10 C 0.524 3.476 11 O -0.529 6.529 12 N -0.596 5.596 13 C 0.215 3.785 14 C -0.529 4.529 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.276 1.276 20 H -0.264 1.264 21 H -0.285 1.285 22 C 0.123 3.877 23 C -0.056 4.056 24 C 0.220 3.780 25 N -0.453 5.453 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 10.474 -3.120 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.094 4.094 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.152 4.152 8 C -0.139 4.139 9 H 0.106 0.894 10 C 0.311 3.689 11 O -0.405 6.405 12 N -0.327 5.327 13 C 0.095 3.905 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.202 1.202 20 H -0.188 1.188 21 H -0.210 1.210 22 C -0.003 4.003 23 C -0.097 4.097 24 C -0.098 4.098 25 N -0.130 5.130 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.152 0.848 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.190 10.741 -2.159 17.147 hybrid contribution -0.092 -1.117 -0.153 1.131 sum -13.282 9.624 -2.312 16.564 Atomic orbital electron populations 1.21749 0.95961 1.01397 1.01346 1.21885 0.95778 0.95934 1.03578 1.21680 0.92708 0.96651 0.98326 0.90647 1.22428 0.97592 0.98468 0.96882 1.22475 0.94942 0.97886 1.00787 1.22363 0.97322 0.98738 0.96734 1.22155 0.96380 0.94747 1.00626 0.89385 1.20147 0.77499 0.87805 0.83430 1.90666 1.49089 1.66134 1.34571 1.47931 1.67218 1.13476 1.04115 1.19720 0.96575 0.76865 0.97375 1.21318 0.89641 0.94619 1.51165 0.90403 1.24845 0.94766 0.98828 0.94450 1.69884 1.08156 1.25282 1.50043 0.86921 0.81012 0.83679 0.78569 1.20162 1.18849 1.21031 1.21276 0.94521 0.95906 0.88610 1.20036 1.03064 1.00149 0.86462 1.29260 0.92832 0.92936 0.94730 1.81210 1.09265 1.10465 1.12086 0.93059 0.92875 0.92966 0.90943 0.91054 0.91910 0.91259 0.91779 0.91594 0.91619 0.89355 0.94090 0.95643 0.92551 0.90640 0.89509 0.84843 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.76 37.16 0.36 -1.14 16 2 C -0.13 -1.69 4.12 -26.73 -0.11 -1.80 16 3 C -0.07 -0.83 2.59 -89.50 -0.23 -1.06 16 4 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.12 -1.17 5.52 -25.07 -0.14 -1.31 16 6 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 7 C -0.11 -1.43 6.30 -25.07 -0.16 -1.59 16 8 C -0.12 -1.51 2.40 -90.66 -0.22 -1.73 16 9 H 0.09 0.96 5.55 -51.93 -0.29 0.67 16 10 C 0.52 9.19 4.56 -10.99 -0.05 9.14 16 11 O -0.53 -11.70 14.82 5.56 0.08 -11.62 16 12 N -0.60 -10.39 1.69 -175.05 -0.30 -10.68 16 13 C 0.22 4.69 4.23 -5.19 -0.02 4.67 16 14 C -0.53 -13.80 9.63 -34.44 -0.33 -14.13 16 15 H 0.08 2.18 7.47 -52.49 -0.39 1.79 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -26.36 13.96 55.43 0.77 -25.59 16 18 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.12 1.61 4.72 -4.04 -0.02 1.59 16 23 C -0.06 -0.71 5.84 -29.52 -0.17 -0.89 16 24 C 0.22 3.00 15.43 -20.74 -0.32 2.68 16 25 N -0.45 -7.19 18.54 42.18 0.78 -6.41 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.50 7.50 -51.93 -0.39 0.11 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.09 7.30 -51.93 -0.38 0.72 16 30 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.35 6.82 -51.93 -0.35 1.00 16 37 H 0.04 0.99 6.55 -51.93 -0.34 0.65 16 38 H 0.03 0.52 7.29 -51.93 -0.38 0.15 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 0.79 6.37 -51.93 -0.33 0.46 16 41 H 0.09 1.10 7.84 -51.93 -0.41 0.69 16 42 H 0.13 2.04 7.23 -51.93 -0.38 1.66 16 43 H 0.10 1.16 7.10 -51.93 -0.37 0.79 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -31.60 341.16 -6.73 -38.32 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.86 Total: -0.05 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.68 Total: -5.02 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 1.26 Total: -42.68 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.60 -6.73 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.025 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds