Wall clock time and date at job start Tue Mar 31 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47021 * 2 1 4 4 H 1.08998 * 110.05637 * 53.81157 * 3 2 1 5 5 C 1.54265 * 110.03268 * 292.39751 * 3 2 1 6 6 C 1.54893 * 104.19405 * 217.10441 * 5 3 2 7 7 C 1.54888 * 102.74754 * 37.94419 * 6 5 3 8 8 C 1.53875 * 110.03273 * 175.22944 * 3 2 1 9 9 H 1.08997 * 110.07337 * 238.59116 * 8 3 2 10 10 C 1.50695 * 110.03183 * 0.02562 * 8 3 2 11 11 O 1.21281 * 120.00522 * 91.21598 * 10 8 3 12 12 N 1.34777 * 120.00068 * 271.21633 * 10 8 3 13 13 C 1.46507 * 120.00039 * 175.14235 * 12 10 8 14 14 C 1.50698 * 109.46998 * 90.00337 * 13 12 10 15 15 H 1.08001 * 120.00035 * 359.97438 * 14 13 12 16 16 C 1.37869 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00320 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99757 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47228 * 269.99836 * 18 16 14 20 20 H 1.48503 * 109.47357 * 29.99888 * 18 16 14 21 21 H 1.48501 * 109.47051 * 149.99727 * 18 16 14 22 22 C 1.46503 * 120.00018 * 355.14466 * 12 10 8 23 23 C 1.53000 * 109.47111 * 274.86992 * 22 12 10 24 24 C 1.47196 * 109.47018 * 184.89322 * 23 22 12 25 25 N 6.60224 * 119.34839 * 68.48125 * 2 1 3 26 26 H 1.09004 * 109.46947 * 299.99859 * 1 2 3 27 27 H 1.09001 * 109.47693 * 59.99769 * 1 2 3 28 28 H 1.09002 * 109.47046 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47013 * 239.99872 * 2 1 3 30 30 H 1.09002 * 109.47321 * 119.99550 * 2 1 3 31 31 H 1.08994 * 110.48815 * 98.42913 * 5 3 2 32 32 H 1.08999 * 110.60219 * 335.83689 * 5 3 2 33 33 H 1.08996 * 110.75718 * 279.62370 * 6 5 3 34 34 H 1.09003 * 110.91140 * 156.32806 * 6 5 3 35 35 H 1.09002 * 110.48494 * 203.37493 * 7 6 5 36 36 H 1.08998 * 110.60047 * 80.78918 * 7 6 5 37 37 H 1.08993 * 109.47024 * 330.00229 * 13 12 10 38 38 H 1.09005 * 109.46705 * 210.00037 * 13 12 10 39 39 H 0.97000 * 119.99857 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47046 * 34.86767 * 22 12 10 41 41 H 1.09002 * 109.46873 * 154.86943 * 22 12 10 42 42 H 1.08996 * 109.46997 * 304.89373 * 23 22 12 43 43 H 1.09003 * 109.47054 * 64.89235 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5946 1.9964 0.8263 5 6 1.6954 2.1248 -1.3400 6 6 2.9227 3.0223 -1.6358 7 6 4.1080 2.1511 -1.1509 8 6 3.5739 1.4593 0.1202 9 1 3.8737 2.0209 1.0050 10 6 4.1008 0.0497 0.2003 11 8 4.4161 -0.5383 -0.8125 12 7 4.2219 -0.5575 1.3974 13 6 4.6325 -1.9621 1.4681 14 6 6.1346 -2.0423 1.5584 15 1 6.7245 -1.1377 1.5622 16 6 6.7559 -3.2706 1.6361 17 7 8.0669 -3.3407 1.7143 18 14 5.7357 -4.8355 1.6287 19 1 5.3834 -5.2033 3.0236 20 1 4.4931 -4.6126 0.8467 21 1 6.5196 -5.9345 1.0099 22 6 3.9428 0.1869 2.6279 23 6 5.1966 0.9517 3.0568 24 6 4.9535 1.6047 4.3534 25 7 4.7659 2.1109 5.3537 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.7951 2.7308 -1.2391 32 1 1.5678 1.3817 -2.1271 33 1 2.8680 3.9510 -1.0677 34 1 3.0059 3.2283 -2.7029 35 1 4.9684 2.7764 -0.9121 36 1 4.3735 1.4106 -1.9054 37 1 4.2937 -2.4851 0.5739 38 1 4.1902 -2.4259 2.3499 39 1 8.5040 -4.2050 1.7686 40 1 3.1305 0.8916 2.4499 41 1 3.6542 -0.5088 3.4159 42 1 6.0314 0.2572 3.1506 43 1 5.4350 1.7075 2.3084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448771467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:02 Heat of formation + Delta-G solvation = -47.309803 kcal Electronic energy + Delta-G solvation = -22817.222735 eV Core-core repulsion = 19667.960070 eV Total energy + Delta-G solvation = -3149.262665 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.55701 -38.56418 -37.88773 -36.67744 -34.73384 -33.97696 -32.33361 -30.86367 -29.12922 -28.36805 -25.22166 -24.68557 -23.57298 -21.68581 -21.23828 -19.33603 -19.03991 -18.23054 -17.93870 -17.08626 -16.64913 -16.29414 -15.71462 -15.61095 -15.37739 -15.07760 -14.67258 -14.50810 -14.16234 -14.07462 -13.82084 -13.58870 -13.46489 -13.31120 -12.94141 -12.92016 -12.77585 -12.40440 -12.30710 -12.10598 -11.99893 -11.86563 -11.79013 -11.66937 -11.57905 -11.36848 -11.33664 -11.22284 -10.73866 -10.41749 -9.40905 -8.25583 -6.27832 1.35226 1.40011 1.48682 1.66693 1.82475 1.97184 2.30159 2.36638 3.08764 3.11897 3.58934 3.72654 3.78736 3.99281 4.12792 4.19893 4.30119 4.44404 4.50537 4.52272 4.59903 4.70199 4.76201 4.82005 4.85409 4.87661 4.90215 4.98055 5.04487 5.13064 5.14835 5.22878 5.27323 5.31430 5.36435 5.47532 5.52856 5.55400 5.63816 5.71794 6.32891 6.58961 6.74168 6.77103 7.32702 7.54029 8.90341 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.006525 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.095344 B = 4290.465436 C = 5160.253533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C -0.071 4.071 4 H 0.109 0.891 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.112 4.112 9 H 0.118 0.882 10 C 0.520 3.480 11 O -0.585 6.585 12 N -0.598 5.598 13 C 0.223 3.777 14 C -0.522 4.522 15 H 0.046 0.954 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.934 3.066 19 H -0.256 1.256 20 H -0.255 1.255 21 H -0.290 1.290 22 C 0.118 3.882 23 C -0.045 4.045 24 C 0.247 3.753 25 N -0.485 5.485 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 12.306 -2.169 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.090 4.090 4 H 0.127 0.873 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.133 4.133 9 H 0.135 0.865 10 C 0.310 3.690 11 O -0.465 6.465 12 N -0.328 5.328 13 C 0.101 3.899 14 C -0.561 4.561 15 H 0.065 0.935 16 C -0.185 4.185 17 N -0.586 5.586 18 Si 0.758 3.242 19 H -0.181 1.181 20 H -0.179 1.179 21 H -0.216 1.216 22 C -0.007 4.007 23 C -0.087 4.087 24 C -0.070 4.070 25 N -0.163 5.163 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.070 12.608 -1.176 20.459 hybrid contribution 0.856 -1.645 -0.499 1.921 sum -15.214 10.963 -1.676 18.827 Atomic orbital electron populations 1.21706 0.93890 1.01541 1.02732 1.21830 0.97590 0.96587 1.01117 1.21776 0.90980 0.96014 1.00215 0.87266 1.22432 0.98796 0.98299 0.95686 1.22463 0.93137 0.98133 1.01438 1.22384 0.99131 0.98474 0.95798 1.22266 0.97805 0.91268 1.01972 0.86453 1.21054 0.76183 0.89353 0.82405 1.90642 1.51457 1.67869 1.36545 1.47910 1.66747 1.12202 1.05921 1.19369 0.93692 0.79929 0.96952 1.21616 0.91846 0.93366 1.49271 0.93549 1.25713 0.95738 1.02498 0.94551 1.70037 1.10099 1.26015 1.52432 0.85914 0.79476 0.79245 0.79562 1.18058 1.17949 1.21602 1.21584 0.95576 0.96569 0.86949 1.19907 1.01990 1.00080 0.86674 1.29115 0.91758 0.91951 0.94177 1.81253 1.10386 1.11756 1.12913 0.91076 0.91962 0.93582 0.94729 0.92295 0.89198 0.93117 0.89257 0.91227 0.90719 0.93130 0.96509 0.93424 0.92674 0.86732 0.88671 0.87575 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.76 71.98 0.70 -1.80 16 2 C -0.13 -3.15 4.12 30.59 0.13 -3.02 16 3 C -0.07 -1.34 2.59 -10.07 -0.03 -1.37 16 4 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.11 -1.96 5.52 31.67 0.17 -1.79 16 6 C -0.11 -1.93 6.91 31.89 0.22 -1.71 16 7 C -0.12 -2.87 6.30 31.67 0.20 -2.67 16 8 C -0.11 -2.63 2.40 -10.82 -0.03 -2.66 16 9 H 0.12 2.06 5.55 -2.39 -0.01 2.04 16 10 C 0.52 18.21 4.56 87.66 0.40 18.61 16 11 O -0.59 -27.12 14.82 -3.03 -0.04 -27.16 16 12 N -0.60 -20.40 1.69 -826.14 -1.40 -21.80 16 13 C 0.22 9.76 4.23 85.63 0.36 10.12 16 14 C -0.52 -27.99 9.63 25.60 0.25 -27.75 16 15 H 0.05 2.71 7.47 -2.91 -0.02 2.69 16 16 C 0.01 0.72 5.47 84.65 0.46 1.18 16 17 N -0.95 -57.57 13.96 21.44 0.30 -57.27 16 18 Si 0.93 42.89 27.47 68.60 1.88 44.78 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 C 0.12 2.77 4.72 86.38 0.41 3.18 16 23 C -0.05 -1.07 5.84 28.79 0.17 -0.90 16 24 C 0.25 6.17 15.43 89.43 1.38 7.55 16 25 N -0.48 -14.39 18.54 20.01 0.37 -14.02 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 1.06 7.30 -2.39 -0.02 1.05 16 30 H 0.06 1.51 6.34 -2.39 -0.02 1.50 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.06 7.77 -2.39 -0.02 1.04 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.61 6.82 -2.39 -0.02 1.59 16 37 H 0.02 0.83 6.55 -2.39 -0.02 0.81 16 38 H 0.05 1.89 7.29 -2.38 -0.02 1.87 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.11 1.87 6.37 -2.39 -0.02 1.85 16 41 H 0.09 2.13 7.84 -2.39 -0.02 2.11 16 42 H 0.11 3.24 7.23 -2.39 -0.02 3.22 16 43 H 0.13 2.45 7.10 -2.39 -0.02 2.44 16 Total: -1.00 -73.23 341.16 6.85 -66.38 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.94 Total: 12.12 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 4.80 Total: -3.02 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -0.73 Total: -93.09 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.04 Total: -27.16 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Total: -73.23 6.85 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.069 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds