Wall clock time and date at job start Tue Mar 31 2020 00:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46892 * 2 1 4 4 H 1.09000 * 110.53890 * 307.60807 * 3 2 1 5 5 C 1.54885 * 110.48606 * 70.22518 * 3 2 1 6 6 C 1.54889 * 102.74997 * 156.61717 * 5 3 2 7 7 C 1.54257 * 104.19753 * 322.05792 * 6 5 3 8 8 C 1.53878 * 106.59746 * 23.60648 * 7 6 5 9 9 H 1.08999 * 110.03085 * 240.66625 * 8 7 6 10 10 C 1.50701 * 110.03096 * 119.28692 * 8 7 6 11 11 O 1.21290 * 119.99967 * 268.35762 * 10 8 7 12 12 N 1.34774 * 120.00382 * 88.35969 * 10 8 7 13 13 C 1.46498 * 119.99752 * 4.71922 * 12 10 8 14 14 C 1.50695 * 109.47337 * 269.99772 * 13 12 10 15 15 H 1.08003 * 119.99646 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00359 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47230 * 239.99951 * 18 16 14 21 21 H 1.48504 * 109.46961 * 119.99992 * 18 16 14 22 22 C 1.46503 * 120.00376 * 184.71762 * 12 10 8 23 23 C 1.53002 * 109.47122 * 274.14395 * 22 12 10 24 24 C 1.47204 * 109.46941 * 183.88725 * 23 22 12 25 25 N 8.14018 * 122.80477 * 279.43900 * 2 1 3 26 26 H 1.08992 * 109.47717 * 299.99933 * 1 2 3 27 27 H 1.08998 * 109.47067 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47717 * 240.00067 * 2 1 3 30 30 H 1.08998 * 109.47067 * 119.99624 * 2 1 3 31 31 H 1.08999 * 110.75912 * 38.30415 * 5 3 2 32 32 H 1.09005 * 110.91591 * 275.00813 * 5 3 2 33 33 H 1.08997 * 110.48689 * 203.37462 * 6 5 3 34 34 H 1.09006 * 110.59290 * 80.79114 * 6 5 3 35 35 H 1.09003 * 110.03315 * 264.32189 * 7 6 5 36 36 H 1.09002 * 110.03467 * 142.88891 * 7 6 5 37 37 H 1.09002 * 109.47325 * 149.99942 * 13 12 10 38 38 H 1.08996 * 109.47324 * 30.00157 * 13 12 10 39 39 H 0.97001 * 120.00432 * 359.97438 * 17 16 14 40 40 H 1.08996 * 109.46924 * 34.14419 * 22 12 10 41 41 H 1.08998 * 109.47178 * 154.14346 * 22 12 10 42 42 H 1.09000 * 109.47021 * 303.88208 * 23 22 12 43 43 H 1.08998 * 109.47113 * 63.88618 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7578 2.1173 1.3653 6 6 2.8152 3.2481 1.4128 7 6 4.0700 2.6198 0.7724 8 6 3.5771 1.4717 -0.1258 9 1 3.9983 0.5253 0.2131 10 6 3.9731 1.7296 -1.5569 11 8 3.2159 2.3189 -2.2988 12 7 5.1685 1.3053 -2.0123 13 6 6.0391 0.5043 -1.1482 14 6 6.9454 1.4172 -0.3633 15 1 6.8791 2.4872 -0.4945 16 6 7.8591 0.8866 0.5225 17 7 7.9401 -0.4163 0.6820 18 14 8.9820 2.0183 1.4961 19 1 8.6936 3.4301 1.1372 20 1 10.3980 1.7052 1.1767 21 1 8.7465 1.8193 2.9488 22 6 5.5973 1.6451 -3.3713 23 6 5.0421 0.6126 -4.3544 24 6 5.5490 0.9001 -5.7062 25 7 5.9401 1.1221 -6.7494 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9089 1.4126 2.1831 32 1 0.7493 2.5299 1.3945 33 1 3.0175 3.5381 2.4439 34 1 2.4818 4.1093 0.8337 35 1 4.7297 2.2303 1.5478 36 1 4.5956 3.3634 0.1733 37 1 6.6415 -0.1665 -1.7609 38 1 5.4292 -0.0814 -0.4605 39 1 7.3568 -1.0040 0.1767 40 1 5.2230 2.6346 -3.6336 41 1 6.6862 1.6440 -3.4196 42 1 5.3603 -0.3851 -4.0518 43 1 3.9532 0.6617 -4.3566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448771472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:11 Heat of formation + Delta-G solvation = -44.269916 kcal Electronic energy + Delta-G solvation = -22575.372043 eV Core-core repulsion = 19426.241198 eV Total energy + Delta-G solvation = -3149.130846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.96723 -37.57924 -36.54533 -35.30694 -33.18796 -32.92537 -31.31049 -28.77542 -27.32839 -26.76851 -24.26929 -23.13175 -22.45735 -20.56655 -19.79045 -18.36997 -17.46633 -16.99695 -16.50501 -15.71910 -15.06171 -14.70968 -14.44733 -14.25201 -14.14271 -13.85346 -13.27093 -13.07711 -12.87390 -12.78839 -12.62812 -12.36851 -12.17595 -11.85382 -11.72622 -11.65658 -11.37354 -11.10810 -10.93160 -10.77068 -10.75095 -10.62157 -10.39874 -10.25990 -10.24036 -10.17809 -10.00648 -9.35802 -9.07080 -8.54358 -7.86576 -6.55780 -4.31716 2.79901 2.89676 3.23911 3.35212 3.35775 3.49675 3.62088 4.30711 4.37795 4.78552 4.92812 4.99147 5.15618 5.17849 5.27832 5.32884 5.41956 5.46266 5.58071 5.61067 5.81162 5.85922 5.88553 5.93588 5.96268 6.00963 6.08243 6.15515 6.17470 6.22426 6.29359 6.35606 6.40524 6.43195 6.64543 6.72117 6.77766 6.86670 7.24430 7.65577 7.79139 8.01373 8.33232 8.61265 8.82625 9.38337 10.80637 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.008223 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.510582 B = 3404.464935 C = 5588.859162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.091 0.909 5 C -0.116 4.116 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.100 4.100 9 H 0.097 0.903 10 C 0.526 3.474 11 O -0.568 6.568 12 N -0.592 5.592 13 C 0.226 3.774 14 C -0.611 4.611 15 H 0.057 0.943 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 1.068 2.932 19 H -0.288 1.288 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.128 3.872 23 C -0.045 4.045 24 C 0.220 3.780 25 N -0.449 5.449 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.269 0.731 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 1.047 1.408 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.102 4.102 4 H 0.109 0.891 5 C -0.153 4.153 6 C -0.163 4.163 7 C -0.133 4.133 8 C -0.121 4.121 9 H 0.115 0.885 10 C 0.315 3.685 11 O -0.449 6.449 12 N -0.322 5.322 13 C 0.106 3.894 14 C -0.650 4.650 15 H 0.075 0.925 16 C -0.179 4.179 17 N -0.542 5.542 18 Si 0.897 3.103 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.212 1.212 22 C 0.003 3.997 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.126 5.126 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.077 1.685 0.594 9.251 hybrid contribution -1.079 -0.228 -0.721 1.318 sum -10.156 1.457 -0.127 10.261 Atomic orbital electron populations 1.21750 0.96109 1.01044 1.01686 1.21561 0.95615 0.96417 1.01810 1.22055 0.93700 0.96067 0.98391 0.89089 1.22523 0.98348 0.97485 0.96963 1.22390 0.95726 0.97932 1.00263 1.21870 0.96860 0.96214 0.98343 1.21903 0.95965 1.01836 0.92433 0.88476 1.20562 0.80732 0.77701 0.89534 1.90580 1.52006 1.43646 1.58666 1.48036 1.18179 1.52998 1.12976 1.19594 0.89314 0.91146 0.89395 1.22311 1.21644 0.94636 1.26403 0.92459 1.25722 0.97585 0.98149 0.96487 1.70780 1.39107 1.03033 1.41233 0.83529 0.76064 0.74472 0.76252 1.21395 1.21276 1.21162 1.21096 1.00263 0.97006 0.81371 1.19784 1.02677 1.02700 0.83526 1.29115 0.92984 0.92955 0.94703 1.81176 1.09716 1.09144 1.12609 0.92803 0.92868 0.93219 0.92285 0.91971 0.91582 0.92003 0.91901 0.92021 0.90284 0.91773 0.95585 0.95015 0.92079 0.90297 0.89438 0.87308 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.79 37.15 0.36 -1.23 16 2 C -0.12 -1.47 5.28 -26.73 -0.14 -1.62 16 3 C -0.08 -1.19 2.33 -88.96 -0.21 -1.40 16 4 H 0.09 1.45 6.82 -51.93 -0.35 1.10 16 5 C -0.12 -1.46 5.67 -24.74 -0.14 -1.60 16 6 C -0.13 -1.72 6.83 -25.08 -0.17 -1.89 16 7 C -0.09 -1.58 6.00 -25.62 -0.15 -1.74 16 8 C -0.10 -1.68 2.27 -90.65 -0.21 -1.88 16 9 H 0.10 1.71 5.66 -51.93 -0.29 1.41 16 10 C 0.53 9.71 6.52 -10.99 -0.07 9.64 16 11 O -0.57 -11.35 15.30 5.55 0.08 -11.26 16 12 N -0.59 -10.86 2.46 -175.06 -0.43 -11.29 16 13 C 0.23 4.69 4.22 -5.20 -0.02 4.67 16 14 C -0.61 -14.52 8.94 -34.44 -0.31 -14.83 16 15 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 16 C 0.03 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.91 -24.15 13.65 55.43 0.76 -23.39 16 18 Si 1.07 23.00 29.90 -169.99 -5.08 17.92 16 19 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.13 2.06 5.29 -4.04 -0.02 2.03 16 23 C -0.05 -0.60 6.00 -29.52 -0.18 -0.77 16 24 C 0.22 3.21 15.43 -20.76 -0.32 2.89 16 25 N -0.45 -7.55 18.54 42.15 0.78 -6.77 16 26 H 0.05 0.54 7.56 -51.93 -0.39 0.14 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 31 H 0.07 0.80 7.97 -51.93 -0.41 0.38 16 32 H 0.06 0.69 8.06 -51.93 -0.42 0.28 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 37 H 0.03 0.56 7.94 -51.93 -0.41 0.15 16 38 H 0.03 0.68 5.79 -51.93 -0.30 0.38 16 39 H 0.27 7.00 7.22 -40.82 -0.29 6.70 16 40 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 41 H 0.09 1.42 8.04 -51.93 -0.42 1.01 16 42 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -27.58 352.51 -7.35 -34.93 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.10 Total: 1.74 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.67 Total: -7.18 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 1.11 Total: -41.45 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.08 Total: 17.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.58 -7.35 -34.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.343 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds