Wall clock time and date at job start Tue Mar 31 2020 00:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46892 * 2 1 4 4 H 1.09000 * 110.53890 * 307.60807 * 3 2 1 5 5 C 1.54885 * 110.48606 * 70.22518 * 3 2 1 6 6 C 1.54889 * 102.74997 * 156.61717 * 5 3 2 7 7 C 1.54257 * 104.19753 * 322.05792 * 6 5 3 8 8 C 1.53878 * 106.59746 * 23.60648 * 7 6 5 9 9 H 1.08999 * 110.03085 * 240.66625 * 8 7 6 10 10 C 1.50701 * 110.03096 * 119.28692 * 8 7 6 11 11 O 1.21290 * 119.99967 * 268.35762 * 10 8 7 12 12 N 1.34774 * 120.00382 * 88.35969 * 10 8 7 13 13 C 1.46498 * 119.99752 * 4.71922 * 12 10 8 14 14 C 1.50695 * 109.47337 * 269.99772 * 13 12 10 15 15 H 1.08003 * 119.99646 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00359 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46856 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47230 * 239.99951 * 18 16 14 21 21 H 1.48504 * 109.46961 * 119.99992 * 18 16 14 22 22 C 1.46503 * 120.00376 * 184.71762 * 12 10 8 23 23 C 1.53002 * 109.47122 * 274.14395 * 22 12 10 24 24 C 1.47204 * 109.46941 * 183.88725 * 23 22 12 25 25 N 8.14018 * 122.80477 * 279.43900 * 2 1 3 26 26 H 1.08992 * 109.47717 * 299.99933 * 1 2 3 27 27 H 1.08998 * 109.47067 * 60.00376 * 1 2 3 28 28 H 1.09001 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47717 * 240.00067 * 2 1 3 30 30 H 1.08998 * 109.47067 * 119.99624 * 2 1 3 31 31 H 1.08999 * 110.75912 * 38.30415 * 5 3 2 32 32 H 1.09005 * 110.91591 * 275.00813 * 5 3 2 33 33 H 1.08997 * 110.48689 * 203.37462 * 6 5 3 34 34 H 1.09006 * 110.59290 * 80.79114 * 6 5 3 35 35 H 1.09003 * 110.03315 * 264.32189 * 7 6 5 36 36 H 1.09002 * 110.03467 * 142.88891 * 7 6 5 37 37 H 1.09002 * 109.47325 * 149.99942 * 13 12 10 38 38 H 1.08996 * 109.47324 * 30.00157 * 13 12 10 39 39 H 0.97001 * 120.00432 * 359.97438 * 17 16 14 40 40 H 1.08996 * 109.46924 * 34.14419 * 22 12 10 41 41 H 1.08998 * 109.47178 * 154.14346 * 22 12 10 42 42 H 1.09000 * 109.47021 * 303.88208 * 23 22 12 43 43 H 1.08998 * 109.47113 * 63.88618 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7578 2.1173 1.3653 6 6 2.8152 3.2481 1.4128 7 6 4.0700 2.6198 0.7724 8 6 3.5771 1.4717 -0.1258 9 1 3.9983 0.5253 0.2131 10 6 3.9731 1.7296 -1.5569 11 8 3.2159 2.3189 -2.2988 12 7 5.1685 1.3053 -2.0123 13 6 6.0391 0.5043 -1.1482 14 6 6.9454 1.4172 -0.3633 15 1 6.8791 2.4872 -0.4945 16 6 7.8591 0.8866 0.5225 17 7 7.9401 -0.4163 0.6820 18 14 8.9820 2.0183 1.4961 19 1 8.6936 3.4301 1.1372 20 1 10.3980 1.7052 1.1767 21 1 8.7465 1.8193 2.9488 22 6 5.5973 1.6451 -3.3713 23 6 5.0421 0.6126 -4.3544 24 6 5.5490 0.9001 -5.7062 25 7 5.9401 1.1221 -6.7494 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.9089 1.4126 2.1831 32 1 0.7493 2.5299 1.3945 33 1 3.0175 3.5381 2.4439 34 1 2.4818 4.1093 0.8337 35 1 4.7297 2.2303 1.5478 36 1 4.5956 3.3634 0.1733 37 1 6.6415 -0.1665 -1.7609 38 1 5.4292 -0.0814 -0.4605 39 1 7.3568 -1.0040 0.1767 40 1 5.2230 2.6346 -3.6336 41 1 6.6862 1.6440 -3.4196 42 1 5.3603 -0.3851 -4.0518 43 1 3.9532 0.6617 -4.3566 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448771472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:10 Heat of formation + Delta-G solvation = -56.649568 kcal Electronic energy + Delta-G solvation = -22575.908865 eV Core-core repulsion = 19426.241198 eV Total energy + Delta-G solvation = -3149.667668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38713 -38.83095 -37.83371 -36.88661 -34.89547 -34.02528 -32.70892 -30.01591 -28.53049 -28.41119 -25.59930 -24.92140 -23.52794 -21.84057 -20.94381 -19.91810 -18.72118 -18.64952 -18.01181 -17.15381 -16.35411 -15.91962 -15.73986 -15.64125 -15.49636 -15.27933 -14.60776 -14.54252 -14.17614 -13.98160 -13.84452 -13.77150 -13.58096 -13.40290 -12.98217 -12.84309 -12.73835 -12.55124 -12.46225 -12.04799 -11.96191 -11.93735 -11.79428 -11.59142 -11.35344 -11.31783 -11.22081 -11.13578 -10.62851 -10.40874 -9.49902 -8.53185 -6.29786 1.54275 1.59052 1.63595 1.69650 1.76191 1.80434 2.21400 2.59237 3.07435 3.22913 3.59089 3.72185 3.77567 3.98554 4.04352 4.21413 4.29327 4.42781 4.42913 4.50932 4.56130 4.72832 4.75764 4.75963 4.78439 4.84581 4.88607 4.90257 5.03824 5.05847 5.12998 5.20545 5.27189 5.30460 5.35863 5.47246 5.49427 5.64809 5.70258 5.92513 6.21259 6.45906 6.57627 6.68689 7.30134 7.46319 8.83310 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.009289 B = 0.008223 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3013.510582 B = 3404.464935 C = 5588.859162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.102 4.102 9 H 0.086 0.914 10 C 0.523 3.477 11 O -0.583 6.583 12 N -0.594 5.594 13 C 0.237 3.763 14 C -0.605 4.605 15 H 0.044 0.956 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 1.103 2.897 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.280 1.280 22 C 0.124 3.876 23 C -0.029 4.029 24 C 0.243 3.757 25 N -0.485 5.485 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.024 0.976 38 H 0.030 0.970 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 1.104 2.188 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.097 4.097 4 H 0.094 0.906 5 C -0.145 4.145 6 C -0.158 4.158 7 C -0.133 4.133 8 C -0.123 4.123 9 H 0.105 0.895 10 C 0.313 3.687 11 O -0.464 6.464 12 N -0.323 5.323 13 C 0.116 3.884 14 C -0.644 4.644 15 H 0.062 0.938 16 C -0.214 4.214 17 N -0.570 5.570 18 Si 0.928 3.072 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.206 1.206 22 C 0.000 4.000 23 C -0.070 4.070 24 C -0.074 4.074 25 N -0.163 5.163 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.346 1.748 1.357 10.580 hybrid contribution -0.687 -0.210 -0.995 1.227 sum -11.033 1.538 0.362 11.146 Atomic orbital electron populations 1.21714 0.94327 1.02015 1.02085 1.21547 0.97147 0.95067 1.01513 1.22014 0.91459 0.97232 0.98988 0.90624 1.22520 0.99035 0.96998 0.95996 1.22377 0.94399 0.98165 1.00885 1.21834 0.98033 0.95726 0.97705 1.21961 0.97986 1.01127 0.91196 0.89549 1.20870 0.80458 0.77213 0.90136 1.90567 1.52337 1.44305 1.59232 1.47992 1.17894 1.52799 1.13606 1.19312 0.89042 0.90708 0.89334 1.22462 1.21540 0.94281 1.26075 0.93798 1.26689 0.98833 0.98486 0.97418 1.70867 1.40051 1.03695 1.42371 0.83061 0.74842 0.73673 0.75664 1.20458 1.21148 1.20559 1.21165 1.00199 0.97724 0.80960 1.19675 1.02960 1.02545 0.81841 1.29185 0.91905 0.91808 0.94484 1.81203 1.10972 1.10343 1.13807 0.91648 0.93208 0.92018 0.93369 0.91548 0.90606 0.89851 0.90212 0.91969 0.91699 0.94194 0.95778 0.95189 0.92687 0.90834 0.89828 0.85411 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.79 71.98 0.70 -2.03 16 2 C -0.12 -2.73 5.28 30.59 0.16 -2.57 16 3 C -0.08 -2.13 2.33 -9.72 -0.02 -2.15 16 4 H 0.08 2.33 6.82 -2.39 -0.02 2.31 16 5 C -0.11 -2.46 5.67 31.88 0.18 -2.28 16 6 C -0.12 -3.11 6.83 31.67 0.22 -2.89 16 7 C -0.09 -3.15 6.00 31.32 0.19 -2.97 16 8 C -0.10 -3.37 2.27 -10.81 -0.02 -3.40 16 9 H 0.09 3.05 5.66 -2.39 -0.01 3.03 16 10 C 0.52 19.25 6.52 87.66 0.57 19.82 16 11 O -0.58 -23.03 15.30 -3.06 -0.05 -23.07 16 12 N -0.59 -21.67 2.46 -826.16 -2.04 -23.70 16 13 C 0.24 9.87 4.22 85.63 0.36 10.23 16 14 C -0.60 -28.85 8.94 25.60 0.23 -28.62 16 15 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 16 C -0.01 -0.69 5.46 84.66 0.46 -0.23 16 17 N -0.93 -49.78 13.65 21.45 0.29 -49.49 16 18 Si 1.10 46.05 29.90 68.60 2.05 48.10 16 19 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.12 3.93 5.29 86.38 0.46 4.38 16 23 C -0.03 -0.72 6.00 28.79 0.17 -0.55 16 24 C 0.24 6.83 15.43 89.44 1.38 8.21 16 25 N -0.49 -15.99 18.54 20.01 0.37 -15.62 16 26 H 0.06 1.09 7.56 -2.39 -0.02 1.07 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.51 8.02 -2.39 -0.02 1.49 16 31 H 0.08 1.60 7.97 -2.39 -0.02 1.58 16 32 H 0.08 1.58 8.06 -2.38 -0.02 1.56 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 37 H 0.02 1.03 7.94 -2.39 -0.02 1.01 16 38 H 0.03 1.29 5.79 -2.39 -0.01 1.27 16 39 H 0.26 13.81 7.22 -92.71 -0.67 13.14 16 40 H 0.07 2.41 7.62 -2.39 -0.02 2.39 16 41 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 42 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -58.20 352.51 6.75 -51.45 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 1.08 Total: 17.38 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.04 Total: -5.05 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.37 Total: -88.81 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.05 Total: 48.10 kcal Total: -58.20 6.75 -51.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448771472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.202 kcal (2) G-P(sol) polarization free energy of solvation -58.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds