Wall clock time and date at job start Tue Mar 31 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46611 * 240.00045 * 2 1 3 5 5 H 1.07999 * 119.99992 * 239.99766 * 4 2 1 6 6 C 1.37875 * 120.00038 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47273 * 59.99698 * 8 6 4 10 10 H 1.48505 * 109.47234 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47290 * 299.99894 * 8 6 4 12 12 C 1.53002 * 109.46828 * 120.00291 * 2 1 3 13 13 N 1.46494 * 109.47001 * 299.99604 * 12 2 1 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.47200 * 109.47078 * 59.99475 * 16 14 13 18 18 N 5.62964 * 60.60773 * 87.43816 * 2 1 3 19 19 C 1.53003 * 109.46986 * 300.00090 * 16 14 13 20 20 C 1.53005 * 109.47219 * 180.02562 * 19 16 14 21 21 C 1.52994 * 109.46906 * 59.99762 * 20 19 16 22 22 C 1.52998 * 109.47366 * 299.99803 * 21 20 19 23 23 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 24 24 H 1.09005 * 109.46707 * 300.00089 * 1 2 3 25 25 H 1.08998 * 109.47134 * 59.99558 * 1 2 3 26 26 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 300.00522 * 3 2 1 29 29 H 1.08996 * 109.46790 * 60.00298 * 3 2 1 30 30 H 0.97001 * 120.00302 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46767 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47113 * 60.00010 * 12 2 1 33 33 H 0.96995 * 120.00292 * 0.27801 * 13 12 2 34 34 H 1.09005 * 109.46932 * 299.99942 * 19 16 14 35 35 H 1.08998 * 109.47453 * 59.99968 * 19 16 14 36 36 H 1.09000 * 109.46608 * 299.99989 * 20 19 16 37 37 H 1.08999 * 109.46783 * 179.97438 * 20 19 16 38 38 H 1.09005 * 109.46734 * 180.02562 * 21 20 19 39 39 H 1.08992 * 109.47456 * 60.00368 * 21 20 19 40 40 H 1.09000 * 109.47603 * 300.00663 * 22 21 20 41 41 H 1.08998 * 109.47444 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47330 * 299.99977 * 23 16 14 43 43 H 1.09005 * 109.47124 * 59.99773 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2190 4.9000 17 6 -0.0970 0.2181 4.9000 18 7 -1.2329 0.2192 4.9001 19 6 1.8840 1.6619 4.9000 20 6 1.3741 2.3827 6.1496 21 6 1.8852 1.6616 7.3984 22 6 1.3761 0.2188 7.3985 23 6 1.8860 -0.5015 6.1492 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 0.7087 1.1614 -3.4843 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9908 0.7556 2.3564 34 1 2.9740 1.6626 4.8999 35 1 1.5203 2.1755 4.0100 36 1 0.2841 2.3819 6.1501 37 1 1.7371 3.4104 6.1497 38 1 1.5216 2.1748 8.2886 39 1 2.9751 1.6623 7.3979 40 1 0.2861 0.2180 7.3990 41 1 1.7399 -0.2949 8.2884 42 1 1.5238 -1.5295 6.1494 43 1 2.9761 -0.5003 6.1488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457986696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:00 Heat of formation + Delta-G solvation = -39.066451 kcal Electronic energy + Delta-G solvation = -22484.849898 eV Core-core repulsion = 19335.944691 eV Total energy + Delta-G solvation = -3148.905207 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.66038 -38.16095 -36.40837 -35.89777 -33.47982 -31.84398 -31.12104 -30.59967 -25.87858 -25.76386 -25.18353 -23.84788 -22.83848 -21.31034 -20.44754 -18.90170 -17.77080 -16.72040 -15.93588 -15.47633 -14.95973 -14.87239 -14.68431 -14.51094 -14.01660 -13.62833 -13.31639 -13.22694 -12.96670 -12.69796 -12.61481 -12.43676 -12.21290 -12.16257 -11.86662 -11.42532 -11.37289 -11.22468 -10.87624 -10.87237 -10.77466 -10.75361 -10.42546 -10.39882 -10.22674 -9.67712 -9.65971 -9.29427 -8.83306 -8.55700 -8.37560 -6.04151 -4.14708 2.43737 2.63940 2.83746 3.28895 3.33518 3.36201 3.52432 3.77947 4.37097 4.39555 4.42653 4.60936 4.85118 4.90133 5.05172 5.15238 5.21991 5.22608 5.34574 5.52379 5.67716 5.78030 5.81474 5.88526 5.95449 6.03508 6.13535 6.15445 6.25984 6.45572 6.68179 6.78496 6.86067 6.91774 6.97566 7.30833 7.40863 7.52003 7.66396 7.86486 7.97358 8.09908 8.33477 8.46659 8.85453 9.51313 10.97226 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.004076 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.212355 B = 6868.295061 C = 7007.255608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.518 3.482 15 O -0.532 6.532 16 C 0.022 3.978 17 C 0.217 3.783 18 N -0.415 5.415 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.092 4.092 24 H 0.004 0.996 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 4.062 16.871 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.300 3.700 15 O -0.409 6.409 16 C 0.015 3.985 17 C -0.101 4.101 18 N -0.090 5.090 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.162 4.162 23 C -0.131 4.131 24 H 0.023 0.977 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.052 3.461 16.747 17.133 hybrid contribution 0.356 -0.103 -1.008 1.074 sum 1.408 3.358 15.739 16.154 Atomic orbital electron populations 1.21840 0.97775 0.99215 1.00059 1.18367 0.92759 0.92840 0.90520 1.21832 0.98649 0.98257 1.00103 1.20921 1.31677 1.12175 0.89817 0.92422 1.24875 0.94803 0.94904 0.98859 1.69790 1.36486 1.22706 1.23390 0.86625 0.79229 0.79797 0.82157 1.20289 1.21332 1.20239 1.21821 0.98409 0.95880 0.83103 1.46370 1.51661 1.31819 1.05949 1.19807 0.81466 0.84655 0.84073 1.90705 1.38318 1.25510 1.86388 1.18650 0.82865 0.99562 0.97422 1.28461 0.94225 0.93703 0.93749 1.81213 1.12182 1.07839 1.07726 1.21672 1.02591 0.90544 0.99799 1.21598 1.01000 0.99475 0.93917 1.21573 1.01249 0.95346 0.97679 1.21631 1.00871 0.95973 0.97766 1.21433 1.02517 0.99082 0.90036 0.97729 0.89493 0.95426 0.95258 0.89549 0.97590 0.92911 0.92150 0.92457 0.76592 0.88898 0.90255 0.91922 0.90702 0.91707 0.91205 0.92147 0.90857 0.90265 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 2 C 0.06 1.27 0.50 -155.65 -0.08 1.19 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.37 9.35 55.43 0.52 -22.85 16 8 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 13 N -0.71 -12.09 4.74 -60.29 -0.29 -12.37 16 14 C 0.52 8.26 6.45 -10.98 -0.07 8.19 16 15 O -0.53 -10.01 15.98 5.56 0.09 -9.92 16 16 C 0.02 0.27 0.57 -158.45 -0.09 0.18 16 17 C 0.22 3.01 11.13 -20.76 -0.23 2.78 16 18 N -0.41 -6.57 18.54 42.15 0.78 -5.79 16 19 C -0.11 -1.03 4.60 -26.73 -0.12 -1.15 16 20 C -0.12 -0.99 5.70 -26.73 -0.15 -1.14 16 21 C -0.12 -0.87 5.92 -26.74 -0.16 -1.03 16 22 C -0.12 -1.04 5.70 -26.75 -0.15 -1.19 16 23 C -0.09 -0.96 3.99 -26.76 -0.11 -1.06 16 24 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 25 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 29 H 0.01 0.10 6.87 -51.93 -0.36 -0.26 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.40 6.40 5.45 -40.82 -0.22 6.18 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.77 7.57 -51.93 -0.39 0.38 16 36 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.57 7.23 -51.93 -0.38 0.20 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -28.19 336.73 -6.69 -34.88 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.90 Total: 3.01 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.95 Total: -7.52 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 1.01 Total: -41.02 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.19 -6.69 -34.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.183 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds