Wall clock time and date at job start Tue Mar 31 2020 00:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46611 * 240.00045 * 2 1 3 5 5 H 1.07999 * 119.99992 * 239.99766 * 4 2 1 6 6 C 1.37875 * 120.00038 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00004 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47273 * 59.99698 * 8 6 4 10 10 H 1.48505 * 109.47234 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47290 * 299.99894 * 8 6 4 12 12 C 1.53002 * 109.46828 * 120.00291 * 2 1 3 13 13 N 1.46494 * 109.47001 * 299.99604 * 12 2 1 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 2 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.47200 * 109.47078 * 59.99475 * 16 14 13 18 18 N 5.62964 * 60.60773 * 87.43816 * 2 1 3 19 19 C 1.53003 * 109.46986 * 300.00090 * 16 14 13 20 20 C 1.53005 * 109.47219 * 180.02562 * 19 16 14 21 21 C 1.52994 * 109.46906 * 59.99762 * 20 19 16 22 22 C 1.52998 * 109.47366 * 299.99803 * 21 20 19 23 23 C 1.52992 * 109.47257 * 180.02562 * 16 14 13 24 24 H 1.09005 * 109.46707 * 300.00089 * 1 2 3 25 25 H 1.08998 * 109.47134 * 59.99558 * 1 2 3 26 26 H 1.08999 * 109.47484 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46624 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 300.00522 * 3 2 1 29 29 H 1.08996 * 109.46790 * 60.00298 * 3 2 1 30 30 H 0.97001 * 120.00302 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46767 * 179.97438 * 12 2 1 32 32 H 1.09002 * 109.47113 * 60.00010 * 12 2 1 33 33 H 0.96995 * 120.00292 * 0.27801 * 13 12 2 34 34 H 1.09005 * 109.46932 * 299.99942 * 19 16 14 35 35 H 1.08998 * 109.47453 * 59.99968 * 19 16 14 36 36 H 1.09000 * 109.46608 * 299.99989 * 20 19 16 37 37 H 1.08999 * 109.46783 * 179.97438 * 20 19 16 38 38 H 1.09005 * 109.46734 * 180.02562 * 21 20 19 39 39 H 1.08992 * 109.47456 * 60.00368 * 21 20 19 40 40 H 1.09000 * 109.47603 * 300.00663 * 22 21 20 41 41 H 1.08998 * 109.47444 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47330 * 299.99977 * 23 16 14 43 43 H 1.09005 * 109.47124 * 59.99773 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5749 -1.4771 3.7807 16 6 1.3750 0.2190 4.9000 17 6 -0.0970 0.2181 4.9000 18 7 -1.2329 0.2192 4.9001 19 6 1.8840 1.6619 4.9000 20 6 1.3741 2.3827 6.1496 21 6 1.8852 1.6616 7.3984 22 6 1.3761 0.2188 7.3985 23 6 1.8860 -0.5015 6.1492 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 0.7087 1.1614 -3.4843 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9908 0.7556 2.3564 34 1 2.9740 1.6626 4.8999 35 1 1.5203 2.1755 4.0100 36 1 0.2841 2.3819 6.1501 37 1 1.7371 3.4104 6.1497 38 1 1.5216 2.1748 8.2886 39 1 2.9751 1.6623 7.3979 40 1 0.2861 0.2180 7.3990 41 1 1.7399 -0.2949 8.2884 42 1 1.5238 -1.5295 6.1494 43 1 2.9761 -0.5003 6.1488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:00 Heat of formation + Delta-G solvation = -54.335450 kcal Electronic energy + Delta-G solvation = -22485.512011 eV Core-core repulsion = 19335.944691 eV Total energy + Delta-G solvation = -3149.567320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80151 -39.35286 -38.05995 -36.97116 -35.10706 -33.13648 -32.16900 -31.74259 -27.60414 -27.52731 -26.93125 -24.90795 -23.58365 -22.41528 -21.47404 -20.64695 -19.07106 -17.77330 -17.63142 -16.87047 -16.62351 -16.14142 -15.70784 -15.56938 -15.27769 -14.83248 -14.71272 -14.43472 -14.14231 -14.06502 -14.01684 -13.66382 -13.21667 -13.17052 -13.12244 -13.05469 -12.74305 -12.67247 -12.62326 -12.27195 -12.13702 -12.10338 -11.61948 -11.50169 -11.44331 -11.29859 -11.09389 -10.80054 -10.66874 -10.39830 -10.02044 -8.01746 -6.17766 1.21972 1.45083 1.46539 1.52428 1.53004 1.62158 2.21843 2.48417 2.70203 3.22206 3.46112 3.59219 3.69041 4.12515 4.19488 4.21590 4.40435 4.44050 4.50999 4.52977 4.64629 4.69338 4.85633 4.96785 5.01664 5.02229 5.08127 5.09645 5.17828 5.18454 5.21009 5.30063 5.34987 5.36372 5.51858 5.52888 5.64664 5.67620 6.11873 6.20710 6.29594 6.42336 6.48809 6.86270 7.10775 7.50199 8.97003 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033317 B = 0.004076 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.212355 B = 6868.295061 C = 7007.255608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.707 5.707 14 C 0.520 3.480 15 O -0.560 6.560 16 C 0.032 3.968 17 C 0.233 3.767 18 N -0.450 5.450 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.092 4.092 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 5.023 18.436 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.022 3.978 13 N -0.357 5.357 14 C 0.304 3.696 15 O -0.438 6.438 16 C 0.025 3.975 17 C -0.085 4.085 18 N -0.125 5.125 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.131 4.131 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.242 0.758 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.896 4.435 18.329 18.953 hybrid contribution 0.093 -0.437 -1.474 1.541 sum 1.989 3.998 16.854 17.436 Atomic orbital electron populations 1.21686 0.97881 0.98348 0.99941 1.18369 0.92605 0.93459 0.90600 1.21660 0.98390 0.97458 1.00293 1.21234 1.31772 1.12246 0.91366 0.93343 1.25457 0.95119 0.95562 1.01021 1.69906 1.36951 1.23364 1.23634 0.85819 0.78795 0.78678 0.79527 1.20455 1.21067 1.19901 1.21376 0.97857 0.94922 0.83629 1.46225 1.51953 1.31949 1.05575 1.20378 0.80577 0.84142 0.84534 1.90695 1.39545 1.26733 1.86852 1.18752 0.81623 1.01192 0.95964 1.28744 0.94464 0.92559 0.92708 1.81228 1.13299 1.09164 1.08813 1.21799 1.03572 0.88479 1.00839 1.21603 1.00141 1.00485 0.93453 1.21595 1.02151 0.94171 0.97686 1.21622 0.99976 0.96980 0.97214 1.21505 1.03099 0.98382 0.90075 0.95494 0.91826 0.96600 0.95468 0.92105 0.94558 0.93088 0.92720 0.94230 0.75837 0.87275 0.90281 0.93314 0.88733 0.90398 0.89703 0.93542 0.89088 0.91707 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 2 C 0.05 2.28 0.50 -52.92 -0.03 2.26 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -27.36 8.01 25.60 0.21 -27.15 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -47.78 9.35 21.45 0.20 -47.58 16 8 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.15 5.92 4.50 86.38 0.39 6.31 16 13 N -0.71 -23.37 4.74 -463.05 -2.20 -25.57 16 14 C 0.52 15.98 6.45 87.66 0.57 16.55 16 15 O -0.56 -20.67 15.98 -3.03 -0.05 -20.72 16 16 C 0.03 0.71 0.57 -54.73 -0.03 0.68 16 17 C 0.23 6.23 11.13 89.44 1.00 7.22 16 18 N -0.45 -13.98 18.54 20.00 0.37 -13.61 16 19 C -0.11 -1.78 4.60 30.60 0.14 -1.64 16 20 C -0.12 -1.56 5.70 30.59 0.17 -1.39 16 21 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 22 C -0.12 -1.71 5.70 30.58 0.17 -1.53 16 23 C -0.09 -1.74 3.99 30.58 0.12 -1.62 16 24 H 0.03 1.06 6.86 -2.38 -0.02 1.04 16 25 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 26 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 2.94 6.07 -2.39 -0.01 2.93 16 29 H 0.04 1.29 6.87 -2.39 -0.02 1.27 16 30 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.05 2.27 8.14 -2.38 -0.02 2.26 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.40 12.34 5.45 -92.71 -0.51 11.83 16 34 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 35 H 0.08 1.32 7.57 -2.39 -0.02 1.31 16 36 H 0.05 0.79 7.23 -2.39 -0.02 0.77 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.80 7.23 -2.39 -0.02 0.78 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.06 1.41 8.10 -2.38 -0.02 1.39 16 43 H 0.10 1.77 8.10 -2.38 -0.02 1.75 16 Total: -1.00 -60.56 336.73 5.34 -55.23 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.49 Total: 17.07 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.49 Total: -9.00 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -1.63 Total: -86.75 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -60.56 5.34 -55.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.894 kcal (2) G-P(sol) polarization free energy of solvation -60.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds