Wall clock time and date at job start Tue Mar 31 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 C 1.50703 * 109.47326 * 239.99577 * 2 1 3 5 5 H 1.07996 * 120.00035 * 241.35310 * 4 2 1 6 6 C 1.37877 * 119.99469 * 61.34963 * 4 2 1 7 7 N 1.31522 * 119.99900 * 193.97912 * 6 4 2 8 8 Si 1.86801 * 120.00184 * 13.97660 * 6 4 2 9 9 H 1.48501 * 109.47036 * 84.54989 * 8 6 4 10 10 H 1.48497 * 109.46841 * 204.54736 * 8 6 4 11 11 H 1.48490 * 109.47241 * 324.54751 * 8 6 4 12 12 C 1.53002 * 109.46942 * 120.00091 * 2 1 3 13 13 N 1.46505 * 109.46862 * 299.99519 * 12 2 1 14 14 C 1.34777 * 119.99679 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99756 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.46816 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.36340 * 125.63971 * 90.00118 * 19 18 17 21 21 C 1.34845 * 108.21698 * 179.97438 * 20 19 18 22 22 C 1.40882 * 107.41993 * 359.97438 * 21 20 19 23 23 C 1.34844 * 107.41960 * 0.02562 * 22 21 20 24 24 H 1.09007 * 109.47305 * 309.36998 * 1 2 3 25 25 H 1.09000 * 109.46795 * 69.36506 * 1 2 3 26 26 H 1.08997 * 109.47531 * 189.36543 * 1 2 3 27 27 H 1.08994 * 109.47031 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47044 * 299.99924 * 3 2 1 29 29 H 1.08995 * 109.47171 * 59.99907 * 3 2 1 30 30 H 0.96995 * 119.99930 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47407 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47379 * 59.99789 * 12 2 1 33 33 H 0.96996 * 119.99884 * 0.02562 * 13 12 2 34 34 H 1.08991 * 109.47002 * 59.99739 * 16 14 13 35 35 H 1.09004 * 109.46380 * 299.99447 * 16 14 13 36 36 H 1.09003 * 109.47686 * 59.99723 * 17 16 14 37 37 H 1.09000 * 109.47638 * 299.99289 * 17 16 14 38 38 H 1.08994 * 109.47279 * 59.99489 * 18 17 16 39 39 H 1.08999 * 109.46798 * 299.99419 * 18 17 16 40 40 H 1.08004 * 125.88631 * 359.70602 * 20 19 18 41 41 H 1.08009 * 126.28805 * 179.97438 * 21 20 19 42 42 H 1.08007 * 126.29531 * 179.97438 * 22 21 20 43 43 H 1.08005 * 125.89545 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9727 -3.5460 8 14 1.0276 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2471 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5756 -1.4763 3.7809 16 6 1.3749 0.2195 4.9000 17 6 1.8849 -0.5017 6.1492 18 6 1.3750 0.2196 7.3985 19 7 1.8639 -0.4706 8.5947 20 6 3.0335 -0.2049 9.2429 21 6 3.1330 -1.0439 10.2939 22 6 1.9825 -1.8569 10.2949 23 6 1.2240 -1.4843 9.2442 24 1 -0.3634 0.6519 0.7945 25 1 -0.3633 0.3622 -0.9617 26 1 -0.3634 -1.0139 0.1672 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6980 -0.6299 -4.4268 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 0.9938 0.7579 2.3564 34 1 0.2849 0.2187 4.9000 35 1 1.7376 1.2474 4.8999 36 1 2.9749 -0.5015 6.1494 37 1 1.5218 -1.5295 6.1492 38 1 0.2851 0.2198 7.3985 39 1 1.7385 1.2472 7.3984 40 1 3.7576 0.5451 8.9606 41 1 3.9455 -1.0849 11.0044 42 1 1.7510 -2.6362 11.0060 43 1 0.2731 -1.9142 8.9655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:04 Heat of formation + Delta-G solvation = 14.230012 kcal Electronic energy + Delta-G solvation = -21125.376147 eV Core-core repulsion = 17978.782048 eV Total energy + Delta-G solvation = -3146.594098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24447 -39.54722 -36.90231 -35.09362 -33.37272 -31.71691 -31.24408 -28.90415 -27.36677 -26.45109 -25.58555 -24.77422 -22.42814 -20.60123 -20.17019 -20.03842 -19.19821 -17.74877 -16.71983 -16.11506 -16.01517 -15.28055 -15.19525 -14.67504 -14.64391 -13.88480 -13.75289 -13.29829 -13.25632 -12.98483 -12.65522 -12.54412 -12.30979 -12.21320 -12.17455 -12.11571 -12.06910 -11.82870 -11.33138 -11.08312 -10.49124 -10.36905 -10.22549 -10.12512 -9.62574 -9.16878 -8.75987 -8.72988 -8.60600 -8.49304 -8.29134 -6.18954 -4.16536 2.14002 2.76783 2.87918 2.93964 3.19452 3.26212 3.34626 3.56462 4.30983 4.38391 4.60985 4.66760 4.89396 4.97082 5.04667 5.08079 5.11428 5.21233 5.38005 5.43717 5.52269 5.72582 5.75101 5.98152 6.00225 6.00552 6.15333 6.18709 6.29017 6.41777 6.46231 6.56855 6.63282 6.72337 6.86160 6.90318 7.10019 7.16260 7.24185 7.37177 7.67277 7.85776 8.39755 8.52968 8.86469 9.44614 10.94171 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049975 B = 0.002712 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.149109 B =10322.817121 C =10490.089676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.723 5.723 14 C 0.504 3.496 15 O -0.547 6.547 16 C -0.140 4.140 17 C -0.119 4.119 18 C 0.104 3.896 19 N -0.446 5.446 20 C -0.015 4.015 21 C -0.206 4.206 22 C -0.206 4.206 23 C -0.015 4.015 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 6.158 22.246 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.128 4.128 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.019 3.981 13 N -0.374 5.374 14 C 0.289 3.711 15 O -0.425 6.425 16 C -0.180 4.180 17 C -0.157 4.157 18 C -0.018 4.018 19 N -0.121 5.121 20 C -0.145 4.145 21 C -0.230 4.230 22 C -0.230 4.230 23 C -0.145 4.145 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.231 0.769 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.176 0.824 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.353 5.590 21.788 22.742 hybrid contribution -0.560 1.345 -0.459 1.528 sum -3.912 6.935 21.329 22.766 Atomic orbital electron populations 1.22299 0.97858 0.99819 0.99975 1.18720 0.92496 0.92246 0.93822 1.22361 1.01210 0.98322 0.98560 1.20718 1.34134 1.12358 0.87997 0.90556 1.24986 0.94680 0.97324 0.95791 1.69953 1.48090 1.35902 0.98740 0.87284 0.79320 0.85525 0.76001 1.21350 1.23365 1.17556 1.21514 0.98598 0.95824 0.82180 1.46335 1.52899 1.31878 1.06258 1.20471 0.80868 0.84908 0.84833 1.90709 1.38281 1.26618 1.86936 1.21583 1.02621 1.00784 0.93050 1.21691 1.02658 1.00302 0.91085 1.21929 1.00354 0.96446 0.83076 1.44159 1.17308 1.28471 1.22190 1.21836 0.90853 1.04743 0.97085 1.20890 1.00587 1.00495 1.01050 1.20890 0.96962 1.04139 1.01032 1.21840 1.00582 0.95008 0.97077 0.95966 0.92491 0.93409 0.92793 0.94006 0.95209 0.92517 0.92022 0.91914 0.76915 0.88851 0.88869 0.90357 0.90338 0.89227 0.89243 0.82383 0.84957 0.84957 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 7.53 37.16 0.28 -2.52 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.90 7.52 37.16 0.28 -2.62 16 4 C -0.51 -13.65 8.62 -34.44 -0.30 -13.94 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.07 2.06 5.32 -17.82 -0.09 1.97 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 8 Si 0.89 20.74 22.79 -169.99 -3.87 16.87 16 9 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.25 -5.26 4.65 56.52 0.26 -5.00 16 12 C 0.14 2.76 4.49 -4.04 -0.02 2.74 16 13 N -0.72 -11.02 5.00 -60.29 -0.30 -11.32 16 14 C 0.50 7.46 7.83 -10.98 -0.09 7.37 16 15 O -0.55 -10.56 15.98 5.56 0.09 -10.47 16 16 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 17 C -0.12 -1.15 4.83 -26.73 -0.13 -1.28 16 18 C 0.10 0.75 6.09 -4.04 -0.02 0.73 16 19 N -0.45 -4.32 2.75 -117.13 -0.32 -4.64 16 20 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 21 C -0.21 -2.15 10.86 -39.79 -0.43 -2.58 16 22 C -0.21 -2.15 10.86 -39.79 -0.43 -2.59 16 23 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 24 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 25 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 26 H 0.05 0.94 8.12 -51.93 -0.42 0.51 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 29 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.40 5.07 6.26 -40.82 -0.26 4.82 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.48 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 42 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -32.48 338.99 -7.03 -39.50 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.93 Total: 4.91 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.57 Total: -14.33 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.15 Total: -41.60 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -3.87 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.48 -7.03 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.735 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds