Wall clock time and date at job start Tue Mar 31 2020 00:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 C 1.50703 * 109.47326 * 239.99577 * 2 1 3 5 5 H 1.07996 * 120.00035 * 241.35310 * 4 2 1 6 6 C 1.37877 * 119.99469 * 61.34963 * 4 2 1 7 7 N 1.31522 * 119.99900 * 193.97912 * 6 4 2 8 8 Si 1.86801 * 120.00184 * 13.97660 * 6 4 2 9 9 H 1.48501 * 109.47036 * 84.54989 * 8 6 4 10 10 H 1.48497 * 109.46841 * 204.54736 * 8 6 4 11 11 H 1.48490 * 109.47241 * 324.54751 * 8 6 4 12 12 C 1.53002 * 109.46942 * 120.00091 * 2 1 3 13 13 N 1.46505 * 109.46862 * 299.99519 * 12 2 1 14 14 C 1.34777 * 119.99679 * 180.02562 * 13 12 2 15 15 O 1.21283 * 120.00252 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99756 * 180.02562 * 14 13 12 17 17 C 1.52994 * 109.46816 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.47046 * 180.02562 * 18 17 16 20 20 C 1.36340 * 125.63971 * 90.00118 * 19 18 17 21 21 C 1.34845 * 108.21698 * 179.97438 * 20 19 18 22 22 C 1.40882 * 107.41993 * 359.97438 * 21 20 19 23 23 C 1.34844 * 107.41960 * 0.02562 * 22 21 20 24 24 H 1.09007 * 109.47305 * 309.36998 * 1 2 3 25 25 H 1.09000 * 109.46795 * 69.36506 * 1 2 3 26 26 H 1.08997 * 109.47531 * 189.36543 * 1 2 3 27 27 H 1.08994 * 109.47031 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47044 * 299.99924 * 3 2 1 29 29 H 1.08995 * 109.47171 * 59.99907 * 3 2 1 30 30 H 0.96995 * 119.99930 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47407 * 180.02562 * 12 2 1 32 32 H 1.08995 * 109.47379 * 59.99789 * 12 2 1 33 33 H 0.96996 * 119.99884 * 0.02562 * 13 12 2 34 34 H 1.08991 * 109.47002 * 59.99739 * 16 14 13 35 35 H 1.09004 * 109.46380 * 299.99447 * 16 14 13 36 36 H 1.09003 * 109.47686 * 59.99723 * 17 16 14 37 37 H 1.09000 * 109.47638 * 299.99289 * 17 16 14 38 38 H 1.08994 * 109.47279 * 59.99489 * 18 17 16 39 39 H 1.08999 * 109.46798 * 299.99419 * 18 17 16 40 40 H 1.08004 * 125.88631 * 359.70602 * 20 19 18 41 41 H 1.08009 * 126.28805 * 179.97438 * 21 20 19 42 42 H 1.08007 * 126.29531 * 179.97438 * 22 21 20 43 43 H 1.08005 * 125.89545 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6011 -1.1314 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9727 -3.5460 8 14 1.0276 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7084 10 1 0.2471 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5756 -1.4763 3.7809 16 6 1.3749 0.2195 4.9000 17 6 1.8849 -0.5017 6.1492 18 6 1.3750 0.2196 7.3985 19 7 1.8639 -0.4706 8.5947 20 6 3.0335 -0.2049 9.2429 21 6 3.1330 -1.0439 10.2939 22 6 1.9825 -1.8569 10.2949 23 6 1.2240 -1.4843 9.2442 24 1 -0.3634 0.6519 0.7945 25 1 -0.3633 0.3622 -0.9617 26 1 -0.3634 -1.0139 0.1672 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6980 -0.6299 -4.4268 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 0.9938 0.7579 2.3564 34 1 0.2849 0.2187 4.9000 35 1 1.7376 1.2474 4.8999 36 1 2.9749 -0.5015 6.1494 37 1 1.5218 -1.5295 6.1492 38 1 0.2851 0.2198 7.3985 39 1 1.7385 1.2472 7.3984 40 1 3.7576 0.5451 8.9606 41 1 3.9455 -1.0849 11.0044 42 1 1.7510 -2.6362 11.0060 43 1 0.2731 -1.9142 8.9655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:03 Heat of formation + Delta-G solvation = -7.412686 kcal Electronic energy + Delta-G solvation = -21126.314645 eV Core-core repulsion = 17978.782048 eV Total energy + Delta-G solvation = -3147.532596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.93472 -40.81526 -38.48077 -35.87090 -34.98505 -33.46951 -32.16189 -29.60924 -28.45098 -28.00028 -27.17297 -26.36362 -23.29388 -21.31710 -21.29527 -20.90281 -20.77738 -18.66705 -18.11080 -17.70691 -16.94728 -16.87819 -16.59184 -15.73668 -15.48489 -15.00899 -14.96075 -14.76624 -14.36730 -14.32228 -14.05975 -13.99248 -13.75149 -13.32003 -12.98657 -12.95886 -12.91267 -12.66997 -12.56556 -12.40164 -12.14569 -11.95567 -11.77492 -11.76605 -11.10911 -10.85329 -10.62578 -10.38620 -9.98142 -9.47484 -9.02026 -8.31238 -6.33474 1.35842 1.37731 1.41512 1.51194 1.73402 2.10077 2.18047 2.34269 2.43825 3.04981 3.74998 3.83612 3.95617 4.07818 4.27428 4.30002 4.35419 4.39876 4.42347 4.43159 4.56849 4.70676 4.75056 4.77133 4.81556 4.84015 4.86964 4.95025 5.03829 5.06839 5.18290 5.26041 5.42790 5.44882 5.47432 5.56135 5.72300 5.80202 6.13053 6.29220 6.37914 6.58865 6.67963 6.73037 7.31465 7.38083 8.86234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.049975 B = 0.002712 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.149109 B =10322.817121 C =10490.089676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.147 4.147 4 C -0.521 4.521 5 H 0.023 0.977 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.282 1.282 10 H -0.316 1.316 11 H -0.199 1.199 12 C 0.157 3.843 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.601 6.601 16 C -0.124 4.124 17 C -0.113 4.113 18 C 0.107 3.893 19 N -0.451 5.451 20 C -0.025 4.025 21 C -0.230 4.230 22 C -0.230 4.230 23 C -0.025 4.025 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.264 0.736 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.414 0.586 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.178 0.822 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 9.911 24.465 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 C -0.204 4.204 4 C -0.559 4.559 5 H 0.041 0.959 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.246 1.246 11 H -0.122 1.122 12 C 0.032 3.968 13 N -0.364 5.364 14 C 0.287 3.713 15 O -0.482 6.482 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.014 4.014 19 N -0.126 5.126 20 C -0.155 4.155 21 C -0.254 4.254 22 C -0.254 4.254 23 C -0.155 4.155 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.252 0.748 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.195 0.805 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.670 9.377 24.054 26.433 hybrid contribution 0.255 0.001 -1.109 1.138 sum -5.415 9.378 22.945 25.372 Atomic orbital electron populations 1.22219 0.95863 1.00644 1.01089 1.18655 0.93917 0.93183 0.91626 1.22291 1.00885 0.96658 1.00533 1.21071 1.32945 1.11041 0.90833 0.95878 1.25937 0.95419 1.01906 0.95153 1.70128 1.50755 1.38427 0.99451 0.86291 0.79429 0.79512 0.77094 1.20910 1.24615 1.12237 1.20970 0.97068 0.94894 0.83859 1.46080 1.53081 1.32138 1.05065 1.21576 0.79532 0.84228 0.85981 1.90702 1.40643 1.29247 1.87655 1.21605 1.04588 1.01349 0.88843 1.21583 1.01059 0.99534 0.92985 1.22075 1.01799 0.96822 0.80679 1.44384 1.17130 1.28414 1.22648 1.22233 0.91368 1.04976 0.96935 1.21192 1.01135 1.01151 1.01957 1.21191 0.97483 1.04826 1.01934 1.22235 1.01286 0.95070 0.96937 0.90974 0.93672 0.94289 0.93721 0.94684 0.90205 0.92684 0.94474 0.94681 0.74757 0.85218 0.85158 0.92934 0.92963 0.86707 0.86693 0.80466 0.84259 0.84265 0.80478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 7.53 71.98 0.54 -4.52 16 2 C 0.03 1.12 0.50 -52.93 -0.03 1.09 16 3 C -0.15 -5.19 7.52 71.98 0.54 -4.65 16 4 C -0.52 -28.62 8.62 25.60 0.22 -28.39 16 5 H 0.02 1.46 7.99 -2.91 -0.02 1.43 16 6 C 0.01 0.73 5.32 84.65 0.45 1.18 16 7 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 8 Si 0.95 41.83 22.79 68.60 1.56 43.39 16 9 H -0.28 -12.19 7.10 99.48 0.71 -11.48 16 10 H -0.32 -14.51 7.11 99.48 0.71 -13.80 16 11 H -0.20 -7.20 4.65 99.48 0.46 -6.74 16 12 C 0.16 6.08 4.49 86.38 0.39 6.47 16 13 N -0.71 -19.40 5.00 -463.04 -2.32 -21.71 16 14 C 0.50 13.53 7.83 87.66 0.69 14.21 16 15 O -0.60 -23.27 15.98 -3.04 -0.05 -23.31 16 16 C -0.12 -1.67 5.70 29.85 0.17 -1.50 16 17 C -0.11 -1.88 4.83 30.59 0.15 -1.73 16 18 C 0.11 1.12 6.09 86.38 0.53 1.64 16 19 N -0.45 -7.68 2.75 -524.47 -1.44 -9.13 16 20 C -0.02 -0.46 11.43 83.21 0.95 0.49 16 21 C -0.23 -4.69 10.86 22.14 0.24 -4.45 16 22 C -0.23 -4.69 10.86 22.14 0.24 -4.45 16 23 C -0.03 -0.46 11.43 83.21 0.95 0.49 16 24 H 0.07 1.88 7.13 -2.38 -0.02 1.86 16 25 H 0.04 1.73 4.30 -2.39 -0.01 1.72 16 26 H 0.04 1.45 8.12 -2.39 -0.02 1.43 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.03 1.30 2.25 -2.39 -0.01 1.29 16 29 H 0.08 2.02 6.86 -2.39 -0.02 2.01 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.41 8.16 6.26 -92.71 -0.58 7.58 16 34 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 37 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 42 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -78.12 338.99 4.25 -73.87 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.17 Total: 19.57 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 6.03 Total: -24.11 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -3.46 Total: -89.41 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.31 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.56 Total: 43.39 kcal Total: -78.12 4.25 -73.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.454 kcal (2) G-P(sol) polarization free energy of solvation -78.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds