Wall clock time and date at job start Tue Mar 31 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 N 1.46504 * 109.46894 * 120.00156 * 2 1 3 5 5 C 1.35539 * 125.67759 * 294.67510 * 4 2 1 6 6 C 1.35448 * 108.87387 * 179.97438 * 5 4 2 7 7 C 1.39838 * 107.86231 * 0.24143 * 6 5 4 8 8 C 1.37650 * 125.68309 * 114.64840 * 4 2 1 9 9 C 1.46681 * 126.22859 * 0.02562 * 8 4 2 10 10 O 1.21692 * 120.00264 * 4.87338 * 9 8 4 11 11 N 1.34780 * 119.99638 * 184.87176 * 9 8 4 12 12 C 1.46501 * 119.99449 * 185.29029 * 11 9 8 13 13 C 1.53007 * 109.46557 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47164 * 300.00156 * 13 12 11 15 15 C 1.53000 * 109.46904 * 60.00629 * 13 12 11 16 16 C 1.50706 * 109.46738 * 180.02562 * 13 12 11 17 17 H 1.07999 * 120.00150 * 355.43864 * 16 13 12 18 18 C 1.37879 * 119.99957 * 175.44546 * 16 13 12 19 19 N 1.31505 * 120.00179 * 201.16469 * 18 16 13 20 20 Si 1.86808 * 119.99816 * 21.15922 * 18 16 13 21 21 H 1.48496 * 109.47047 * 85.91740 * 20 18 16 22 22 H 1.48501 * 109.46908 * 205.91599 * 20 18 16 23 23 H 1.48502 * 109.47240 * 325.91433 * 20 18 16 24 24 H 1.09004 * 109.47159 * 300.00438 * 1 2 3 25 25 H 1.09008 * 109.46728 * 60.00036 * 1 2 3 26 26 H 1.08997 * 109.47652 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47159 * 239.99562 * 2 1 3 28 28 H 1.08997 * 109.47019 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47080 * 299.99844 * 3 2 1 30 30 H 1.09004 * 109.47286 * 59.99639 * 3 2 1 31 31 H 1.07998 * 125.56114 * 0.02562 * 5 4 2 32 32 H 1.07996 * 126.06482 * 179.97438 * 6 5 4 33 33 H 1.08002 * 126.45071 * 179.76087 * 7 6 5 34 34 H 0.96992 * 120.00247 * 5.29201 * 11 9 8 35 35 H 1.08995 * 109.47747 * 299.99790 * 12 11 9 36 36 H 1.09005 * 109.47174 * 60.00911 * 12 11 9 37 37 H 1.08996 * 109.47209 * 72.32134 * 14 13 12 38 38 H 1.09001 * 109.46921 * 192.31478 * 14 13 12 39 39 H 1.08998 * 109.47162 * 312.31179 * 14 13 12 40 40 H 1.08997 * 109.47684 * 59.99517 * 15 13 12 41 41 H 1.09003 * 109.46788 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47161 * 299.99240 * 15 13 12 43 43 H 0.97001 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.8483 -0.2735 2.4746 6 6 2.4341 -1.1660 3.3082 7 6 2.9976 -2.1785 2.5253 8 6 2.7255 -1.8715 1.2091 9 6 3.1224 -2.6571 0.0357 10 8 2.9031 -2.2325 -1.0835 11 7 3.7300 -3.8493 0.1971 12 6 4.2304 -4.5802 -0.9698 13 6 4.8716 -5.8923 -0.5132 14 6 6.0331 -5.5892 0.4355 15 6 3.8285 -6.7439 0.2132 16 6 5.3869 -6.6439 -1.7135 17 1 5.2042 -6.2640 -2.7078 18 6 6.0915 -7.8166 -1.5422 19 7 6.8845 -8.2526 -2.4963 20 14 5.9196 -8.7861 0.0454 21 1 4.7484 -9.6936 -0.0532 22 1 7.1492 -9.5875 0.2715 23 1 5.7247 -7.8478 1.1798 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.3297 0.6236 2.7788 32 1 2.4647 -1.1041 4.3859 33 1 3.5411 -3.0399 2.8843 34 1 3.8359 -4.2233 1.0857 35 1 3.4030 -4.7958 -1.6459 36 1 4.9738 -3.9737 -1.4871 37 1 5.6404 -5.2461 1.3926 38 1 6.6230 -6.4930 0.5878 39 1 6.6633 -4.8128 0.0018 40 1 3.0010 -6.9597 -0.4625 41 1 4.2852 -7.6788 0.5382 42 1 3.4562 -6.2001 1.0814 43 1 7.3805 -9.0775 -2.3756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:00 Heat of formation + Delta-G solvation = 15.531753 kcal Electronic energy + Delta-G solvation = -22215.506914 eV Core-core repulsion = 19068.969264 eV Total energy + Delta-G solvation = -3146.537651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45040 -38.91077 -36.63791 -35.53790 -33.30554 -31.54997 -29.87627 -29.30043 -27.54410 -26.33806 -25.88144 -24.88925 -22.80336 -21.95164 -20.27443 -19.48858 -18.78297 -17.61354 -16.15727 -15.77776 -15.35034 -15.08537 -14.96296 -14.76448 -14.38813 -14.03564 -13.61442 -13.19163 -12.90563 -12.80799 -12.76529 -12.57301 -12.43251 -12.32947 -12.18792 -12.16852 -11.93908 -11.51959 -11.26498 -11.20464 -10.46195 -10.29880 -10.23156 -10.04735 -9.57512 -9.20657 -8.74999 -8.69125 -8.62627 -8.36585 -8.11459 -6.17908 -4.10144 1.60399 2.68738 2.77560 3.25530 3.33621 3.39141 3.62997 3.71753 4.36849 4.47889 4.74346 4.89322 5.00131 5.03326 5.12765 5.23196 5.26259 5.38303 5.42842 5.51239 5.67956 5.79452 5.83841 5.89451 6.06747 6.06786 6.09169 6.22524 6.39981 6.50589 6.54724 6.64284 6.72998 6.76160 6.82733 6.98568 7.04749 7.24399 7.25718 7.44123 7.74080 7.92809 8.43257 8.55757 8.90844 9.49310 10.94966 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031545 B = 0.004098 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.414445 B = 6830.817875 C = 7304.975870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 C -0.158 4.158 4 N -0.401 5.401 5 C 0.009 3.991 6 C -0.209 4.209 7 C -0.146 4.146 8 C -0.043 4.043 9 C 0.580 3.420 10 O -0.558 6.558 11 N -0.707 5.707 12 C 0.144 3.856 13 C 0.030 3.970 14 C -0.138 4.138 15 C -0.150 4.150 16 C -0.519 4.519 17 H 0.076 0.924 18 C 0.081 3.919 19 N -0.883 5.883 20 Si 0.873 3.127 21 H -0.284 1.284 22 H -0.303 1.303 23 H -0.246 1.246 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.134 0.866 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.162 0.838 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.028 0.972 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 15.933 10.943 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 C -0.216 4.216 4 N -0.074 5.074 5 C -0.126 4.126 6 C -0.233 4.233 7 C -0.173 4.173 8 C -0.157 4.157 9 C 0.367 3.633 10 O -0.440 6.440 11 N -0.357 5.357 12 C 0.022 3.978 13 C 0.029 3.971 14 C -0.195 4.195 15 C -0.207 4.207 16 C -0.556 4.556 17 H 0.094 0.906 18 C -0.123 4.123 19 N -0.519 5.519 20 Si 0.704 3.296 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.172 1.172 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.179 0.821 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.658 16.246 9.693 21.713 hybrid contribution -0.011 -0.875 1.337 1.598 sum -10.668 15.371 11.030 21.720 Atomic orbital electron populations 1.22139 0.93709 1.03069 1.02675 1.21988 0.95197 0.94202 0.88485 1.22129 1.02261 0.94408 1.02775 1.44178 1.39693 1.17180 1.06384 1.21826 1.06188 1.01747 0.82840 1.20759 1.06349 0.97146 0.99090 1.21352 1.04052 1.00956 0.90905 1.20258 1.08101 0.92246 0.95084 1.17038 0.77988 0.81361 0.86884 1.90684 1.56814 1.70766 1.25689 1.45996 1.58257 1.19286 1.12163 1.21572 0.97839 0.92619 0.85787 1.18701 0.91706 0.91176 0.95517 1.22232 0.99374 1.01088 0.96840 1.22438 0.99875 0.99856 0.98575 1.20645 1.35151 1.07597 0.92246 0.90641 1.24920 0.93439 0.97649 0.96256 1.70028 1.24785 1.22312 1.34774 0.87492 0.76397 0.79905 0.85757 1.21155 1.23095 1.17170 0.92239 0.90641 0.91806 0.84843 0.91729 0.90574 0.92179 0.82102 0.84348 0.84056 0.76508 0.91828 0.91725 0.95820 0.92818 0.93413 0.92984 0.93594 0.95321 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.30 37.15 0.35 -1.12 16 2 C 0.10 1.17 3.48 -67.93 -0.24 0.94 16 3 C -0.16 -1.41 9.16 37.16 0.34 -1.07 16 4 N -0.40 -5.16 2.64 -105.81 -0.28 -5.44 16 5 C 0.01 0.10 10.33 -16.91 -0.17 -0.08 16 6 C -0.21 -2.36 10.81 -39.98 -0.43 -2.79 16 7 C -0.15 -1.90 10.35 -39.12 -0.40 -2.31 16 8 C -0.04 -0.64 6.89 -81.98 -0.56 -1.21 16 9 C 0.58 10.17 7.77 -12.85 -0.10 10.07 16 10 O -0.56 -11.17 14.37 5.20 0.07 -11.09 16 11 N -0.71 -12.15 4.98 -61.61 -0.31 -12.46 16 12 C 0.14 2.91 4.48 -4.04 -0.02 2.89 16 13 C 0.03 0.66 0.50 -155.66 -0.08 0.58 16 14 C -0.14 -2.83 7.45 37.16 0.28 -2.55 16 15 C -0.15 -3.05 7.56 37.16 0.28 -2.77 16 16 C -0.52 -13.89 8.60 -34.44 -0.30 -14.19 16 17 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.08 2.23 5.18 -17.82 -0.09 2.14 16 19 N -0.88 -26.22 13.96 55.43 0.77 -25.45 16 20 Si 0.87 20.78 23.05 -169.99 -3.92 16.86 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.25 -5.32 4.64 56.52 0.26 -5.06 16 24 H 0.06 0.47 8.02 -51.93 -0.42 0.05 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.13 1.92 5.34 -51.93 -0.28 1.64 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.45 7.70 -51.93 -0.40 0.05 16 31 H 0.16 1.23 7.90 -52.49 -0.41 0.81 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.62 7.49 -52.49 -0.39 1.22 16 34 H 0.40 6.10 5.26 -40.82 -0.21 5.88 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.02 0.40 7.19 -51.93 -0.37 0.03 16 38 H 0.05 1.17 4.31 -51.93 -0.22 0.95 16 39 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.98 2.49 -51.93 -0.13 0.85 16 42 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -30.79 331.71 -6.50 -37.30 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.69 Total: 6.73 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -1.15 Total: -11.45 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.19 Total: -43.34 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -3.92 Total: 16.86 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.79 -6.50 -37.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.828 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds