Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 N 1.46504 * 109.46894 * 120.00156 * 2 1 3 5 5 C 1.35539 * 125.67759 * 294.67510 * 4 2 1 6 6 C 1.35448 * 108.87387 * 179.97438 * 5 4 2 7 7 C 1.39838 * 107.86231 * 0.24143 * 6 5 4 8 8 C 1.37650 * 125.68309 * 114.64840 * 4 2 1 9 9 C 1.46681 * 126.22859 * 0.02562 * 8 4 2 10 10 O 1.21692 * 120.00264 * 4.87338 * 9 8 4 11 11 N 1.34780 * 119.99638 * 184.87176 * 9 8 4 12 12 C 1.46501 * 119.99449 * 185.29029 * 11 9 8 13 13 C 1.53007 * 109.46557 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47164 * 300.00156 * 13 12 11 15 15 C 1.53000 * 109.46904 * 60.00629 * 13 12 11 16 16 C 1.50706 * 109.46738 * 180.02562 * 13 12 11 17 17 H 1.07999 * 120.00150 * 355.43864 * 16 13 12 18 18 C 1.37879 * 119.99957 * 175.44546 * 16 13 12 19 19 N 1.31505 * 120.00179 * 201.16469 * 18 16 13 20 20 Si 1.86808 * 119.99816 * 21.15922 * 18 16 13 21 21 H 1.48496 * 109.47047 * 85.91740 * 20 18 16 22 22 H 1.48501 * 109.46908 * 205.91599 * 20 18 16 23 23 H 1.48502 * 109.47240 * 325.91433 * 20 18 16 24 24 H 1.09004 * 109.47159 * 300.00438 * 1 2 3 25 25 H 1.09008 * 109.46728 * 60.00036 * 1 2 3 26 26 H 1.08997 * 109.47652 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47159 * 239.99562 * 2 1 3 28 28 H 1.08997 * 109.47019 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47080 * 299.99844 * 3 2 1 30 30 H 1.09004 * 109.47286 * 59.99639 * 3 2 1 31 31 H 1.07998 * 125.56114 * 0.02562 * 5 4 2 32 32 H 1.07996 * 126.06482 * 179.97438 * 6 5 4 33 33 H 1.08002 * 126.45071 * 179.76087 * 7 6 5 34 34 H 0.96992 * 120.00247 * 5.29201 * 11 9 8 35 35 H 1.08995 * 109.47747 * 299.99790 * 12 11 9 36 36 H 1.09005 * 109.47174 * 60.00911 * 12 11 9 37 37 H 1.08996 * 109.47209 * 72.32134 * 14 13 12 38 38 H 1.09001 * 109.46921 * 192.31478 * 14 13 12 39 39 H 1.08998 * 109.47162 * 312.31179 * 14 13 12 40 40 H 1.08997 * 109.47684 * 59.99517 * 15 13 12 41 41 H 1.09003 * 109.46788 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47161 * 299.99240 * 15 13 12 43 43 H 0.97001 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.8483 -0.2735 2.4746 6 6 2.4341 -1.1660 3.3082 7 6 2.9976 -2.1785 2.5253 8 6 2.7255 -1.8715 1.2091 9 6 3.1224 -2.6571 0.0357 10 8 2.9031 -2.2325 -1.0835 11 7 3.7300 -3.8493 0.1971 12 6 4.2304 -4.5802 -0.9698 13 6 4.8716 -5.8923 -0.5132 14 6 6.0331 -5.5892 0.4355 15 6 3.8285 -6.7439 0.2132 16 6 5.3869 -6.6439 -1.7135 17 1 5.2042 -6.2640 -2.7078 18 6 6.0915 -7.8166 -1.5422 19 7 6.8845 -8.2526 -2.4963 20 14 5.9196 -8.7861 0.0454 21 1 4.7484 -9.6936 -0.0532 22 1 7.1492 -9.5875 0.2715 23 1 5.7247 -7.8478 1.1798 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.3297 0.6236 2.7788 32 1 2.4647 -1.1041 4.3859 33 1 3.5411 -3.0399 2.8843 34 1 3.8359 -4.2233 1.0857 35 1 3.4030 -4.7958 -1.6459 36 1 4.9738 -3.9737 -1.4871 37 1 5.6404 -5.2461 1.3926 38 1 6.6230 -6.4930 0.5878 39 1 6.6633 -4.8128 0.0018 40 1 3.0010 -6.9597 -0.4625 41 1 4.2852 -7.6788 0.5382 42 1 3.4562 -6.2001 1.0814 43 1 7.3805 -9.0775 -2.3756 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994091.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = -4.463339 kcal Electronic energy + Delta-G solvation = -22216.373967 eV Core-core repulsion = 19068.969264 eV Total energy + Delta-G solvation = -3147.404703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.41741 -40.31990 -38.30385 -36.40125 -34.97085 -33.47236 -30.73936 -30.40597 -28.24518 -27.98304 -27.44932 -26.86536 -23.85280 -23.01382 -21.33142 -21.00523 -20.16076 -18.69521 -18.05026 -17.25080 -16.69051 -16.54468 -16.36431 -15.69216 -15.55436 -15.05577 -14.86764 -14.83530 -14.58106 -14.38694 -14.05003 -13.66445 -13.62810 -13.55064 -13.17114 -13.09008 -12.96529 -12.91880 -12.41674 -12.30421 -12.18378 -12.05768 -12.00727 -11.76130 -11.16573 -10.88409 -10.54626 -10.37920 -10.10743 -9.64625 -9.10937 -8.32536 -6.28993 0.52594 1.37784 1.40196 1.51008 1.72105 1.89010 2.35877 2.41357 2.45357 3.02975 3.68435 3.80780 3.97026 4.09920 4.17014 4.21406 4.31958 4.42240 4.45872 4.50648 4.60858 4.69326 4.75567 4.79154 4.83377 4.86785 4.93531 4.94922 5.04669 5.07622 5.16909 5.17912 5.25156 5.34365 5.42893 5.53029 5.71223 5.80244 5.89805 6.08735 6.30446 6.41438 6.61040 6.73240 7.21998 7.33619 8.84574 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031545 B = 0.004098 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.414445 B = 6830.817875 C = 7304.975870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.096 3.904 3 C -0.151 4.151 4 N -0.407 5.407 5 C 0.026 3.974 6 C -0.217 4.217 7 C -0.138 4.138 8 C -0.088 4.088 9 C 0.577 3.423 10 O -0.595 6.595 11 N -0.698 5.698 12 C 0.161 3.839 13 C 0.030 3.970 14 C -0.137 4.137 15 C -0.149 4.149 16 C -0.526 4.526 17 H 0.027 0.973 18 C 0.024 3.976 19 N -0.938 5.938 20 Si 0.933 3.067 21 H -0.282 1.282 22 H -0.310 1.310 23 H -0.201 1.201 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.199 0.801 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.412 0.588 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 17.628 15.334 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 C -0.208 4.208 4 N -0.080 5.080 5 C -0.110 4.110 6 C -0.240 4.240 7 C -0.165 4.165 8 C -0.201 4.201 9 C 0.367 3.633 10 O -0.479 6.479 11 N -0.349 5.349 12 C 0.037 3.963 13 C 0.029 3.971 14 C -0.194 4.194 15 C -0.206 4.206 16 C -0.564 4.564 17 H 0.045 0.955 18 C -0.174 4.174 19 N -0.576 5.576 20 Si 0.761 3.239 21 H -0.209 1.209 22 H -0.239 1.239 23 H -0.125 1.125 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.216 0.784 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.250 0.750 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.293 17.958 14.116 25.940 hybrid contribution 0.451 -1.259 -0.114 1.343 sum -11.842 16.699 14.002 24.802 Atomic orbital electron populations 1.22097 0.91931 1.02263 1.04541 1.22018 0.96574 0.94991 0.86972 1.22093 1.01074 0.92930 1.04708 1.44382 1.39434 1.16699 1.07515 1.22527 1.04535 1.02319 0.81655 1.21146 1.05951 0.96482 1.00468 1.21685 1.03045 1.01602 0.90151 1.19978 1.11575 0.93962 0.94555 1.17492 0.77129 0.81210 0.87485 1.90674 1.58192 1.71521 1.27470 1.45694 1.58425 1.19309 1.11514 1.21085 0.96473 0.92112 0.86628 1.18633 0.93046 0.91311 0.94155 1.22165 0.98416 1.00527 0.98313 1.22357 0.98924 0.99550 0.99729 1.20938 1.34923 1.08139 0.92353 0.95479 1.25790 0.92850 0.98580 1.00193 1.70172 1.26593 1.23070 1.37769 0.86517 0.75873 0.78686 0.82798 1.20910 1.23904 1.12463 0.89973 0.89156 0.93892 0.88648 0.93503 0.89104 0.89778 0.78423 0.81599 0.82606 0.75040 0.93818 0.94020 0.91561 0.93859 0.94135 0.93612 0.94003 0.91285 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.30 71.98 0.67 -1.84 16 2 C 0.10 2.09 3.48 44.99 0.16 2.25 16 3 C -0.15 -2.37 9.16 71.98 0.66 -1.71 16 4 N -0.41 -9.67 2.64 -488.68 -1.29 -10.96 16 5 C 0.03 0.45 10.33 83.48 0.86 1.31 16 6 C -0.22 -3.95 10.81 22.01 0.24 -3.71 16 7 C -0.14 -3.15 10.35 22.57 0.23 -2.92 16 8 C -0.09 -2.52 6.89 40.35 0.28 -2.24 16 9 C 0.58 20.40 7.77 86.45 0.67 21.08 16 10 O -0.59 -24.99 14.37 -4.32 -0.06 -25.05 16 11 N -0.70 -23.53 4.98 -467.06 -2.33 -25.85 16 12 C 0.16 6.68 4.48 86.38 0.39 7.07 16 13 C 0.03 1.29 0.50 -52.92 -0.03 1.26 16 14 C -0.14 -5.32 7.45 71.98 0.54 -4.79 16 15 C -0.15 -5.66 7.56 71.98 0.54 -5.12 16 16 C -0.53 -29.29 8.60 25.60 0.22 -29.07 16 17 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 18 C 0.02 1.39 5.18 84.66 0.44 1.82 16 19 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 20 Si 0.93 42.35 23.05 68.60 1.58 43.93 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.20 -7.70 4.64 99.48 0.46 -7.24 16 24 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 25 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 2.86 5.34 -2.39 -0.01 2.85 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.08 0.91 7.70 -2.39 -0.02 0.90 16 31 H 0.20 1.87 7.90 -2.91 -0.02 1.85 16 32 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.16 2.95 7.49 -2.91 -0.02 2.93 16 34 H 0.41 11.45 5.26 -92.71 -0.49 10.97 16 35 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.07 2.01 7.19 -2.39 -0.02 1.99 16 38 H 0.04 1.77 4.31 -2.39 -0.01 1.76 16 39 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.63 2.49 -2.39 -0.01 1.63 16 42 H 0.07 2.07 6.86 -2.39 -0.02 2.05 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -72.07 331.71 4.34 -67.73 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.27 Total: 24.60 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.87 Total: -16.59 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.31 Total: -94.62 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.58 Total: 43.93 kcal Total: -72.07 4.34 -67.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994091.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.267 kcal (2) G-P(sol) polarization free energy of solvation -72.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds