Wall clock time and date at job start Tue Mar 31 2020 00:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 C 1.50695 * 109.52250 * 182.44136 * 7 6 5 9 9 O 1.21282 * 119.99759 * 119.68797 * 8 7 6 10 10 N 1.34771 * 120.00631 * 299.68497 * 8 7 6 11 11 C 1.46494 * 120.00391 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47310 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47517 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47637 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99422 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00631 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00176 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99720 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47042 * 89.99840 * 18 16 14 20 20 H 1.48494 * 109.46949 * 210.00000 * 18 16 14 21 21 H 1.48500 * 109.46940 * 330.00015 * 18 16 14 22 22 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 23 23 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 24 24 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 26 26 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 27 27 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 28 28 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 29 29 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 30 30 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 31 31 H 1.09007 * 109.57302 * 62.28363 * 7 6 5 32 32 H 0.97007 * 119.99390 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.47221 * 299.99993 * 11 10 8 34 34 H 1.08996 * 109.47395 * 60.00349 * 11 10 8 35 35 H 1.09002 * 109.46861 * 300.00076 * 12 11 10 36 36 H 1.08999 * 109.47378 * 59.99495 * 12 11 10 37 37 H 1.09002 * 109.47089 * 299.99902 * 13 12 11 38 38 H 1.09001 * 109.46959 * 59.99841 * 13 12 11 39 39 H 0.97005 * 119.99475 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.50021 * 297.71564 * 22 7 6 41 41 H 1.09001 * 109.50518 * 177.59261 * 22 7 6 42 42 H 1.08998 * 109.46877 * 305.85973 * 23 4 3 43 43 H 1.09002 * 109.46171 * 65.83843 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 6 5.0693 0.4382 5.1337 9 8 5.5752 -0.6158 5.4564 10 7 4.8526 1.3930 6.0598 11 6 5.2273 1.1575 7.4563 12 6 4.8762 2.3893 8.2933 13 6 5.2682 2.1437 9.7516 14 6 4.9230 3.3571 10.5759 15 1 4.4690 4.2174 10.1064 16 6 5.1858 3.3688 11.9293 17 7 4.8849 4.4280 12.6485 18 14 5.9705 1.8807 12.7412 19 1 7.4486 2.0190 12.7051 20 1 5.5161 1.7895 14.1520 21 1 5.5705 0.6505 12.0119 22 6 5.0337 -0.5522 2.8587 23 6 4.5841 -0.3245 1.4136 24 1 -1.0500 -0.0002 0.0001 25 1 3.0089 0.9209 -0.4579 26 1 3.0097 -0.8557 -0.5679 27 1 3.3093 1.9796 1.7282 28 1 1.7057 1.2893 2.0741 29 1 2.6373 0.0861 4.0267 30 1 2.9267 1.8373 4.1689 31 1 5.2240 1.5462 3.3156 32 1 4.4483 2.2362 5.8016 33 1 4.6841 0.2928 7.8375 34 1 6.2992 0.9694 7.5181 35 1 5.4192 3.2543 7.9122 36 1 3.8043 2.5771 8.2315 37 1 4.7256 1.2787 10.1330 38 1 6.3402 1.9562 9.8130 39 1 5.0695 4.4360 13.6008 40 1 4.5240 -1.4258 3.2650 41 1 6.1113 -0.7146 2.8832 42 1 4.8193 -1.2059 0.8170 43 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490618137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:26 Heat of formation + Delta-G solvation = -0.396218 kcal Electronic energy + Delta-G solvation = -20865.984825 eV Core-core repulsion = 17718.756486 eV Total energy + Delta-G solvation = -3147.228339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30257 -38.66478 -35.59182 -34.80643 -33.34641 -32.49654 -31.41452 -31.04714 -28.09361 -26.86923 -24.19828 -23.49232 -22.58088 -20.86012 -20.37010 -19.55161 -18.48414 -17.26395 -16.68269 -16.33206 -15.70903 -15.51004 -15.32496 -15.08772 -14.43381 -14.19378 -14.09480 -13.74584 -13.31072 -13.21053 -13.05976 -12.71265 -12.35220 -11.98234 -11.91380 -11.72666 -11.47181 -11.08590 -11.05802 -10.89807 -10.83253 -10.68267 -10.46873 -10.17113 -9.95702 -9.77166 -9.46851 -9.23319 -8.84633 -8.76589 -8.56224 -6.07073 -4.05792 2.35266 2.52203 2.73143 3.30783 3.33104 3.38606 3.42963 3.64635 4.03745 4.38373 4.43881 4.48590 4.62388 4.83959 4.91547 4.95724 5.04507 5.11083 5.21850 5.25615 5.27064 5.38625 5.50782 5.54125 5.60704 5.65408 5.67909 5.76787 5.91595 6.01438 6.12752 6.36419 6.44142 6.58997 6.66479 6.70077 6.79296 7.22047 7.29654 7.35567 7.64248 7.76206 8.34633 8.49613 8.96626 9.55250 11.06132 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.002615 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.827335 B =10705.501127 C =11221.682152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.163 3.837 4 N -0.537 5.537 5 C 0.057 3.943 6 C -0.108 4.108 7 C -0.109 4.109 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.726 5.726 11 C 0.114 3.886 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.522 4.522 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.903 5.903 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.096 4.096 23 C 0.057 3.943 24 H 0.217 0.783 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.399 0.601 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -7.440 -27.269 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.131 4.131 8 C 0.299 3.701 9 O -0.421 6.421 10 N -0.376 5.376 11 C -0.009 4.009 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.560 4.560 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.542 5.542 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.134 4.134 23 C -0.070 4.070 24 H 0.234 0.766 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.992 -8.527 -26.599 28.216 hybrid contribution 0.381 0.516 0.134 0.655 sum -3.611 -8.011 -26.466 27.886 Atomic orbital electron populations 1.24929 0.95935 1.01187 0.99354 1.22811 0.94180 1.00292 1.00970 1.18980 0.85267 1.01871 0.90276 1.61885 1.14412 1.38357 1.11547 1.22113 1.01267 0.90137 0.93506 1.21590 0.93759 1.03095 0.96135 1.21408 0.97892 1.00811 0.92947 1.20539 0.78310 0.83862 0.87386 1.90692 1.43690 1.25845 1.81908 1.46193 1.63445 1.18640 1.09370 1.21644 1.00296 0.99825 0.79168 1.21699 1.01202 0.95137 0.97048 1.19503 0.96295 0.97943 0.91191 1.21095 1.41164 1.00820 0.92908 0.91027 1.25032 0.95165 0.95932 0.97381 1.69915 1.48321 1.28879 1.07079 0.86773 0.79889 0.84002 0.78625 1.20247 1.21357 1.18887 1.21396 1.01757 0.97525 0.92690 1.22149 0.86210 1.00850 0.97838 0.76606 0.92433 0.88402 0.94395 0.90187 0.90268 0.90616 0.88881 0.76741 0.91833 0.91867 0.92177 0.92112 0.96312 0.96765 0.92696 0.90034 0.90505 0.90054 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.50 19.25 29.55 0.57 -0.93 16 2 C -0.18 -1.55 12.34 -37.12 -0.46 -2.01 16 3 C 0.16 1.14 5.46 -6.61 -0.04 1.11 16 4 N -0.54 -4.46 4.63 -238.18 -1.10 -5.56 16 5 C 0.06 0.46 5.30 -3.83 -0.02 0.44 16 6 C -0.11 -0.95 5.26 -26.65 -0.14 -1.09 16 7 C -0.11 -1.07 2.59 -91.65 -0.24 -1.31 16 8 C 0.51 7.09 7.15 -10.99 -0.08 7.02 16 9 O -0.54 -9.73 15.98 5.56 0.09 -9.64 16 10 N -0.73 -9.73 5.46 -60.30 -0.33 -10.06 16 11 C 0.11 1.88 5.67 -4.04 -0.02 1.85 16 12 C -0.11 -2.09 5.27 -26.73 -0.14 -2.24 16 13 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 14 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 15 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 18 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 C -0.10 -0.92 4.68 -26.65 -0.12 -1.05 16 23 C 0.06 0.42 5.46 -3.84 -0.02 0.40 16 24 H 0.22 0.98 7.80 -54.09 -0.42 0.55 16 25 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 26 H 0.10 0.56 7.99 -51.93 -0.41 0.15 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.67 7.11 -51.93 -0.37 0.30 16 29 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 30 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 4.28 7.96 -40.82 -0.33 3.96 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 43 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -33.51 352.91 -8.52 -42.03 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.34 Total: -0.83 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -1.25 Total: -11.39 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.66 Total: -42.61 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.51 -8.52 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490618137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.632 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds