Wall clock time and date at job start Tue Mar 31 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47167 * 273.54201 * 3 2 1 5 5 C 1.46843 * 111.00049 * 294.21375 * 4 3 2 6 6 C 1.53043 * 109.52446 * 174.16274 * 5 4 3 7 7 C 1.53115 * 109.28035 * 59.17281 * 6 5 4 8 8 C 1.50695 * 109.52250 * 182.44136 * 7 6 5 9 9 O 1.21282 * 119.99759 * 119.68797 * 8 7 6 10 10 N 1.34771 * 120.00631 * 299.68497 * 8 7 6 11 11 C 1.46494 * 120.00391 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47310 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47517 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47637 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99422 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00631 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00176 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99720 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.47042 * 89.99840 * 18 16 14 20 20 H 1.48494 * 109.46949 * 210.00000 * 18 16 14 21 21 H 1.48500 * 109.46940 * 330.00015 * 18 16 14 22 22 C 1.53119 * 109.16391 * 302.35079 * 7 6 5 23 23 C 1.46842 * 111.00041 * 169.99731 * 4 3 2 24 24 H 4.40889 * 5.52257 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.47120 * 153.54271 * 3 2 1 26 26 H 1.09001 * 109.46952 * 33.54408 * 3 2 1 27 27 H 1.09004 * 109.46019 * 294.17499 * 5 4 3 28 28 H 1.08999 * 109.46883 * 54.14319 * 5 4 3 29 29 H 1.09007 * 109.49669 * 299.23395 * 6 5 4 30 30 H 1.08996 * 109.50102 * 179.12000 * 6 5 4 31 31 H 1.09007 * 109.57302 * 62.28363 * 7 6 5 32 32 H 0.97007 * 119.99390 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.47221 * 299.99993 * 11 10 8 34 34 H 1.08996 * 109.47395 * 60.00349 * 11 10 8 35 35 H 1.09002 * 109.46861 * 300.00076 * 12 11 10 36 36 H 1.08999 * 109.47378 * 59.99495 * 12 11 10 37 37 H 1.09002 * 109.47089 * 299.99902 * 13 12 11 38 38 H 1.09001 * 109.46959 * 59.99841 * 13 12 11 39 39 H 0.97005 * 119.99475 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.50021 * 297.71564 * 22 7 6 41 41 H 1.09001 * 109.50518 * 177.59261 * 22 7 6 42 42 H 1.08998 * 109.46877 * 305.85973 * 23 4 3 43 43 H 1.09002 * 109.46171 * 65.83843 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1357 -0.0847 1.3823 5 6 2.7805 1.1208 2.1418 6 6 3.1763 0.9363 3.6086 7 6 4.6832 0.6801 3.6973 8 6 5.0693 0.4382 5.1337 9 8 5.5752 -0.6158 5.4564 10 7 4.8526 1.3930 6.0598 11 6 5.2273 1.1575 7.4563 12 6 4.8762 2.3893 8.2933 13 6 5.2682 2.1437 9.7516 14 6 4.9230 3.3571 10.5759 15 1 4.4690 4.2174 10.1064 16 6 5.1858 3.3688 11.9293 17 7 4.8849 4.4280 12.6485 18 14 5.9705 1.8807 12.7412 19 1 7.4486 2.0190 12.7051 20 1 5.5161 1.7895 14.1520 21 1 5.5705 0.6505 12.0119 22 6 5.0337 -0.5522 2.8587 23 6 4.5841 -0.3245 1.4136 24 1 -1.0500 -0.0002 0.0001 25 1 3.0089 0.9209 -0.4579 26 1 3.0097 -0.8557 -0.5679 27 1 3.3093 1.9796 1.7282 28 1 1.7057 1.2893 2.0741 29 1 2.6373 0.0861 4.0267 30 1 2.9267 1.8373 4.1689 31 1 5.2240 1.5462 3.3156 32 1 4.4483 2.2362 5.8016 33 1 4.6841 0.2928 7.8375 34 1 6.2992 0.9694 7.5181 35 1 5.4192 3.2543 7.9122 36 1 3.8043 2.5771 8.2315 37 1 4.7256 1.2787 10.1330 38 1 6.3402 1.9562 9.8130 39 1 5.0695 4.4360 13.6008 40 1 4.5240 -1.4258 3.2650 41 1 6.1113 -0.7146 2.8832 42 1 4.8193 -1.2059 0.8170 43 1 5.1045 0.5410 1.0037 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490618137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:25 Heat of formation + Delta-G solvation = -23.406307 kcal Electronic energy + Delta-G solvation = -20866.982618 eV Core-core repulsion = 17718.756486 eV Total energy + Delta-G solvation = -3148.226132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.25793 -39.49056 -37.02446 -35.53432 -35.14153 -33.48468 -32.86668 -31.76437 -29.33352 -28.01449 -25.29344 -24.21325 -23.90071 -22.24741 -21.52370 -20.52661 -19.01560 -18.98314 -18.06803 -17.21494 -16.82382 -16.54275 -16.15094 -16.13774 -15.73552 -15.50646 -14.97984 -14.80203 -14.60984 -14.25186 -13.95799 -13.84105 -13.70168 -13.50883 -12.98794 -12.73984 -12.69971 -12.49497 -12.16605 -11.92954 -11.80639 -11.76774 -11.60196 -11.49481 -11.33730 -11.28933 -11.02926 -10.76852 -10.69688 -10.07397 -9.30961 -8.30046 -6.33806 1.36117 1.37964 1.49700 1.63909 1.78048 1.95529 2.23491 2.35698 3.05673 3.09054 3.54040 3.59593 3.77767 3.85985 4.09065 4.19547 4.21586 4.25760 4.37998 4.42669 4.49896 4.53593 4.58769 4.68254 4.75622 4.87623 4.88161 4.91790 4.95395 5.03311 5.09868 5.14350 5.18987 5.34801 5.41614 5.51216 5.55026 5.64598 6.04013 6.10499 6.26786 6.58588 6.74279 6.74427 7.26779 7.31079 8.86288 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.002615 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.827335 B =10705.501127 C =11221.682152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.211 4.211 3 C 0.162 3.838 4 N -0.555 5.555 5 C 0.061 3.939 6 C -0.103 4.103 7 C -0.099 4.099 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.717 5.717 11 C 0.126 3.874 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.249 1.249 22 C -0.094 4.094 23 C 0.063 3.937 24 H 0.239 0.761 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.414 0.586 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -7.999 -29.058 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.211 4.211 3 C 0.036 3.964 4 N -0.280 5.280 5 C -0.066 4.066 6 C -0.141 4.141 7 C -0.120 4.120 8 C 0.299 3.701 9 O -0.468 6.468 10 N -0.368 5.368 11 C 0.002 3.998 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.568 4.568 15 H 0.057 0.943 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.173 1.173 22 C -0.132 4.132 23 C -0.064 4.064 24 H 0.256 0.744 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.251 0.749 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.689 -9.066 -28.425 30.063 hybrid contribution 0.214 0.744 0.661 1.018 sum -3.475 -8.321 -27.763 29.191 Atomic orbital electron populations 1.25661 0.96902 1.00663 0.98647 1.23378 0.95164 1.00904 1.01660 1.19074 0.84579 1.03074 0.89673 1.61833 1.14929 1.38739 1.12513 1.22058 1.01155 0.90696 0.92706 1.21562 0.92600 1.02801 0.97161 1.21417 0.98789 1.01879 0.89903 1.21264 0.77109 0.82916 0.88812 1.90674 1.45697 1.27630 1.82816 1.46037 1.63241 1.19465 1.08105 1.21278 0.99727 0.98192 0.80616 1.21473 1.01453 0.96262 0.94543 1.19472 0.96515 0.95647 0.93450 1.21459 1.40278 1.01476 0.93574 0.94348 1.25983 0.95946 0.99079 0.98255 1.70058 1.50113 1.31297 1.07581 0.85703 0.79199 0.80464 0.77579 1.19209 1.21002 1.17265 1.21356 1.01265 0.96417 0.94179 1.22097 0.85928 1.02151 0.96184 0.74444 0.91024 0.87306 0.92805 0.90709 0.92470 0.89211 0.86210 0.74935 0.92838 0.92520 0.91610 0.91729 0.96247 0.96255 0.92504 0.92707 0.90864 0.88984 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.80 19.25 74.32 1.43 -1.37 16 2 C -0.21 -3.30 12.34 31.13 0.38 -2.91 16 3 C 0.16 1.95 5.46 84.50 0.46 2.41 16 4 N -0.55 -8.14 4.63 -907.47 -4.21 -12.34 16 5 C 0.06 0.85 5.30 86.33 0.46 1.31 16 6 C -0.10 -1.64 5.26 30.65 0.16 -1.48 16 7 C -0.10 -1.74 2.59 -11.46 -0.03 -1.77 16 8 C 0.51 13.54 7.15 87.66 0.63 14.17 16 9 O -0.59 -20.92 15.98 -3.04 -0.05 -20.97 16 10 N -0.72 -18.04 5.46 -463.08 -2.53 -20.57 16 11 C 0.13 4.00 5.67 86.38 0.49 4.49 16 12 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 13 C -0.01 -0.59 4.04 29.84 0.12 -0.47 16 14 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 15 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 16 C 0.00 0.25 5.47 84.65 0.46 0.71 16 17 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 18 Si 0.95 44.55 27.47 68.60 1.88 46.43 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.25 -11.01 6.54 99.48 0.65 -10.35 16 22 C -0.09 -1.70 4.68 30.65 0.14 -1.56 16 23 C 0.06 0.80 5.46 86.33 0.47 1.27 16 24 H 0.24 1.75 7.80 -4.42 -0.03 1.71 16 25 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 26 H 0.11 1.02 7.99 -2.39 -0.02 1.00 16 27 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.07 1.13 7.11 -2.39 -0.02 1.11 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.09 1.16 7.67 -2.39 -0.02 1.14 16 31 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.41 7.90 7.96 -92.70 -0.74 7.16 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 38 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 39 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 40 H 0.05 1.28 8.04 -2.39 -0.02 1.26 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 0.96 8.02 -2.39 -0.02 0.94 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -73.22 352.91 1.17 -72.06 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.18 Total: 12.89 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 5.59 Total: -18.44 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -6.43 Total: -91.97 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -73.22 1.17 -72.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490618137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.651 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds