Wall clock time and date at job start Tue Mar 31 2020 00:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46893 * 96.18351 * 3 2 1 5 5 N 1.46495 * 109.47344 * 336.18189 * 3 2 1 6 6 C 1.34778 * 119.99836 * 85.00345 * 5 3 2 7 7 O 1.21593 * 119.99983 * 354.91990 * 6 5 3 8 8 N 1.34777 * 120.00242 * 174.92760 * 6 5 3 9 9 C 1.46930 * 120.62750 * 4.73591 * 8 6 5 10 10 C 1.52763 * 109.00713 * 233.58848 * 9 8 6 11 11 C 1.53038 * 109.38304 * 305.59134 * 10 9 8 12 12 C 1.50704 * 109.44865 * 181.25478 * 11 10 9 13 13 H 1.07997 * 120.00384 * 239.93350 * 12 11 10 14 14 C 1.37883 * 119.99736 * 59.94003 * 12 11 10 15 15 N 1.31507 * 120.00281 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99528 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47513 * 59.99664 * 16 14 12 18 18 H 1.48499 * 109.46635 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46990 * 299.98866 * 16 14 12 20 20 C 1.53039 * 109.54255 * 61.23962 * 11 10 9 21 21 C 1.46922 * 120.63346 * 185.02104 * 8 6 5 22 22 C 1.52999 * 109.47036 * 216.18268 * 3 2 1 23 23 C 1.52997 * 109.47139 * 59.99898 * 22 3 2 24 24 C 1.53004 * 109.47342 * 300.00395 * 22 3 2 25 25 H 4.18739 * 15.04005 * 0.02562 * 4 2 1 26 26 H 0.96998 * 120.00646 * 265.00114 * 5 3 2 27 27 H 1.08999 * 109.58907 * 353.42128 * 9 8 6 28 28 H 1.09004 * 109.58274 * 113.85044 * 9 8 6 29 29 H 1.08997 * 109.56484 * 185.55624 * 10 9 8 30 30 H 1.08999 * 109.38835 * 65.51581 * 10 9 8 31 31 H 1.09007 * 109.46094 * 301.21610 * 11 10 9 32 32 H 0.97005 * 120.00035 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.50103 * 178.68248 * 20 11 10 34 34 H 1.09002 * 109.51943 * 58.60465 * 20 11 10 35 35 H 1.08996 * 109.59131 * 246.15312 * 21 8 6 36 36 H 1.09002 * 109.58943 * 6.43852 * 21 8 6 37 37 H 1.08993 * 109.47340 * 180.02562 * 22 3 2 38 38 H 1.09002 * 109.47757 * 300.00342 * 23 22 3 39 39 H 1.09004 * 109.46740 * 60.00018 * 23 22 3 40 40 H 1.09003 * 109.47285 * 179.97438 * 23 22 3 41 41 H 1.08995 * 109.47645 * 179.97438 * 24 22 3 42 42 H 1.09001 * 109.46872 * 300.00091 * 24 22 3 43 43 H 1.09003 * 109.47089 * 59.99626 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.1115 -1.0217 5 7 3.1349 -1.2626 0.5578 6 6 3.2642 -2.3444 -0.2358 7 8 2.8888 -2.2990 -1.3914 8 7 3.8094 -3.4765 0.2517 9 6 4.1724 -3.5815 1.6716 10 6 5.6345 -4.0102 1.7809 11 6 5.8477 -5.2970 0.9804 12 6 7.2827 -5.7382 1.1125 13 1 7.9033 -5.8277 0.2332 14 6 7.8032 -6.0278 2.3560 15 7 7.0477 -5.9185 3.4268 16 14 9.5820 -6.5740 2.5197 17 1 10.4765 -5.5112 1.9950 18 1 9.8941 -6.8213 3.9503 19 1 9.7896 -7.8234 1.7443 20 6 5.5264 -5.0419 -0.4940 21 6 4.0579 -4.6268 -0.6279 22 6 3.1555 1.1652 0.8516 23 6 2.6455 1.0096 2.2857 24 6 2.6448 2.4847 0.2692 25 1 -1.0500 0.0005 0.0002 26 1 3.3657 -1.3207 1.4981 27 1 4.0397 -2.6137 2.1552 28 1 3.5393 -4.3246 2.1565 29 1 5.8860 -4.1865 2.8267 30 1 6.2734 -3.2229 1.3809 31 1 5.1911 -6.0773 1.3654 32 1 7.4138 -6.1226 4.3016 33 1 5.7009 -5.9523 -1.0672 34 1 6.1659 -4.2449 -0.8734 35 1 3.4153 -5.4568 -0.3344 36 1 3.8473 -4.3493 -1.6608 37 1 4.2454 1.1660 0.8513 38 1 1.5555 1.0091 2.2858 39 1 3.0093 0.0696 2.7006 40 1 3.0088 1.8390 2.8925 41 1 3.0073 3.3143 0.8761 42 1 3.0080 2.5955 -0.7525 43 1 1.5548 2.4841 0.2692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490962048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:52 Heat of formation + Delta-G solvation = 14.735407 kcal Electronic energy + Delta-G solvation = -22206.884847 eV Core-core repulsion = 19060.312664 eV Total energy + Delta-G solvation = -3146.572183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14703 -37.89300 -36.52620 -33.63931 -33.08472 -32.26973 -30.97105 -30.03274 -27.45075 -26.91214 -25.65437 -22.94563 -22.25821 -21.12065 -20.25595 -18.94415 -18.29383 -17.39272 -16.28552 -16.11083 -15.56082 -15.05889 -14.64630 -14.41330 -14.17031 -13.80862 -13.33628 -13.11610 -12.90276 -12.69473 -12.58216 -12.35329 -12.25882 -11.63979 -11.56878 -11.30640 -11.23809 -11.03832 -10.93460 -10.67282 -10.53517 -10.37193 -10.14732 -10.07332 -9.74150 -9.54666 -9.20119 -9.10878 -8.94548 -8.38337 -7.91148 -6.04053 -4.10087 2.53089 2.87714 3.29149 3.31032 3.33884 3.37030 3.56131 4.24402 4.34470 4.40187 4.63858 4.77323 4.86167 5.25208 5.38503 5.44141 5.49103 5.55892 5.63793 5.71892 5.80767 5.82331 5.94107 5.94913 6.04304 6.08557 6.14540 6.18448 6.28353 6.47832 6.62948 6.67913 6.86242 6.99403 7.13435 7.21847 7.44549 7.65119 7.66018 7.91632 8.02447 8.30089 8.39741 8.93069 8.94003 9.54991 11.01366 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.004078 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.626695 B = 6864.952616 C = 7427.067361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.275 3.725 4 H 0.106 0.894 5 N -0.743 5.743 6 C 0.707 3.293 7 O -0.601 6.601 8 N -0.617 5.617 9 C 0.111 3.889 10 C -0.124 4.124 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.124 4.124 21 C 0.130 3.870 22 C -0.099 4.099 23 C -0.150 4.150 24 C -0.145 4.145 25 H 0.214 0.786 26 H 0.399 0.601 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 13.212 -1.487 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C 0.170 3.830 4 H 0.124 0.876 5 N -0.402 5.402 6 C 0.408 3.592 7 O -0.480 6.480 8 N -0.353 5.353 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.162 4.162 21 C 0.007 3.993 22 C -0.118 4.118 23 C -0.208 4.208 24 C -0.203 4.203 25 H 0.231 0.769 26 H 0.238 0.762 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.556 13.181 -2.122 16.419 hybrid contribution 0.875 -0.415 0.735 1.216 sum -8.681 12.767 -1.387 15.501 Atomic orbital electron populations 1.24838 0.95811 1.00147 1.01603 1.23492 0.94700 1.00102 0.99555 1.17679 0.83189 0.83064 0.99109 0.87649 1.45399 1.71807 1.09816 1.13138 1.15866 0.78525 0.80292 0.84486 1.90860 1.56524 1.83508 1.17157 1.47411 1.63833 1.13362 1.10712 1.21811 0.99933 0.99600 0.79844 1.21945 0.90303 0.98636 1.05359 1.18615 0.96562 0.93057 0.88668 1.21183 0.96468 1.44621 0.92746 0.92743 1.24951 0.97596 0.95393 0.95965 1.69822 1.35814 1.49250 0.98262 0.86679 0.85321 0.79230 0.76892 1.20354 1.21329 1.20302 1.22027 0.93178 1.00093 1.00931 1.21575 0.97671 0.86133 0.93900 1.21376 1.01256 0.93819 0.95327 1.21888 1.01740 1.01848 0.95309 1.21799 1.01708 0.95738 1.01009 0.76934 0.76239 0.92676 0.91991 0.87800 0.94256 0.95451 0.92947 0.92105 0.92973 0.92483 0.90313 0.89385 0.92137 0.92598 0.92041 0.92033 0.92239 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.47 19.25 29.55 0.57 -1.90 16 2 C -0.18 -2.37 10.29 -37.12 -0.38 -2.75 16 3 C 0.28 3.58 2.24 -70.72 -0.16 3.42 16 4 H 0.11 1.50 7.65 -51.93 -0.40 1.11 16 5 N -0.74 -10.96 4.88 -61.45 -0.30 -11.26 16 6 C 0.71 13.10 8.24 -86.92 -0.72 12.39 16 7 O -0.60 -12.90 15.49 5.28 0.08 -12.82 16 8 N -0.62 -11.44 2.98 -178.76 -0.53 -11.98 16 9 C 0.11 1.98 6.40 -3.93 -0.03 1.95 16 10 C -0.12 -2.69 5.14 -26.83 -0.14 -2.82 16 11 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 12 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 13 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.19 11.30 55.43 0.63 -23.56 16 16 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 21 C 0.13 2.45 6.42 -3.71 -0.02 2.42 16 22 C -0.10 -0.96 2.91 -90.62 -0.26 -1.22 16 23 C -0.15 -1.37 8.77 37.16 0.33 -1.04 16 24 C -0.14 -1.20 8.94 37.16 0.33 -0.87 16 25 H 0.21 1.79 7.80 -54.09 -0.42 1.37 16 26 H 0.40 5.23 4.32 -40.82 -0.18 5.06 16 27 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.49 7.03 -51.93 -0.37 1.12 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16 39 H 0.06 0.52 6.51 -51.93 -0.34 0.18 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.52 7.23 -51.93 -0.38 0.15 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -30.11 342.17 -8.01 -38.12 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.82 Total: 5.12 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -1.20 Total: -4.44 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.21 Total: -46.80 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.11 -8.01 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.851 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds