Wall clock time and date at job start Tue Mar 31 2020 00:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46893 * 96.18351 * 3 2 1 5 5 N 1.46495 * 109.47344 * 336.18189 * 3 2 1 6 6 C 1.34778 * 119.99836 * 85.00345 * 5 3 2 7 7 O 1.21593 * 119.99983 * 354.91990 * 6 5 3 8 8 N 1.34777 * 120.00242 * 174.92760 * 6 5 3 9 9 C 1.46930 * 120.62750 * 4.73591 * 8 6 5 10 10 C 1.52763 * 109.00713 * 233.58848 * 9 8 6 11 11 C 1.53038 * 109.38304 * 305.59134 * 10 9 8 12 12 C 1.50704 * 109.44865 * 181.25478 * 11 10 9 13 13 H 1.07997 * 120.00384 * 239.93350 * 12 11 10 14 14 C 1.37883 * 119.99736 * 59.94003 * 12 11 10 15 15 N 1.31507 * 120.00281 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99528 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47513 * 59.99664 * 16 14 12 18 18 H 1.48499 * 109.46635 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46990 * 299.98866 * 16 14 12 20 20 C 1.53039 * 109.54255 * 61.23962 * 11 10 9 21 21 C 1.46922 * 120.63346 * 185.02104 * 8 6 5 22 22 C 1.52999 * 109.47036 * 216.18268 * 3 2 1 23 23 C 1.52997 * 109.47139 * 59.99898 * 22 3 2 24 24 C 1.53004 * 109.47342 * 300.00395 * 22 3 2 25 25 H 4.18739 * 15.04005 * 0.02562 * 4 2 1 26 26 H 0.96998 * 120.00646 * 265.00114 * 5 3 2 27 27 H 1.08999 * 109.58907 * 353.42128 * 9 8 6 28 28 H 1.09004 * 109.58274 * 113.85044 * 9 8 6 29 29 H 1.08997 * 109.56484 * 185.55624 * 10 9 8 30 30 H 1.08999 * 109.38835 * 65.51581 * 10 9 8 31 31 H 1.09007 * 109.46094 * 301.21610 * 11 10 9 32 32 H 0.97005 * 120.00035 * 179.97438 * 15 14 12 33 33 H 1.08994 * 109.50103 * 178.68248 * 20 11 10 34 34 H 1.09002 * 109.51943 * 58.60465 * 20 11 10 35 35 H 1.08996 * 109.59131 * 246.15312 * 21 8 6 36 36 H 1.09002 * 109.58943 * 6.43852 * 21 8 6 37 37 H 1.08993 * 109.47340 * 180.02562 * 22 3 2 38 38 H 1.09002 * 109.47757 * 300.00342 * 23 22 3 39 39 H 1.09004 * 109.46740 * 60.00018 * 23 22 3 40 40 H 1.09003 * 109.47285 * 179.97438 * 23 22 3 41 41 H 1.08995 * 109.47645 * 179.97438 * 24 22 3 42 42 H 1.09001 * 109.46872 * 300.00091 * 24 22 3 43 43 H 1.09003 * 109.47089 * 59.99626 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.1115 -1.0217 5 7 3.1349 -1.2626 0.5578 6 6 3.2642 -2.3444 -0.2358 7 8 2.8888 -2.2990 -1.3914 8 7 3.8094 -3.4765 0.2517 9 6 4.1724 -3.5815 1.6716 10 6 5.6345 -4.0102 1.7809 11 6 5.8477 -5.2970 0.9804 12 6 7.2827 -5.7382 1.1125 13 1 7.9033 -5.8277 0.2332 14 6 7.8032 -6.0278 2.3560 15 7 7.0477 -5.9185 3.4268 16 14 9.5820 -6.5740 2.5197 17 1 10.4765 -5.5112 1.9950 18 1 9.8941 -6.8213 3.9503 19 1 9.7896 -7.8234 1.7443 20 6 5.5264 -5.0419 -0.4940 21 6 4.0579 -4.6268 -0.6279 22 6 3.1555 1.1652 0.8516 23 6 2.6455 1.0096 2.2857 24 6 2.6448 2.4847 0.2692 25 1 -1.0500 0.0005 0.0002 26 1 3.3657 -1.3207 1.4981 27 1 4.0397 -2.6137 2.1552 28 1 3.5393 -4.3246 2.1565 29 1 5.8860 -4.1865 2.8267 30 1 6.2734 -3.2229 1.3809 31 1 5.1911 -6.0773 1.3654 32 1 7.4138 -6.1226 4.3016 33 1 5.7009 -5.9523 -1.0672 34 1 6.1659 -4.2449 -0.8734 35 1 3.4153 -5.4568 -0.3344 36 1 3.8473 -4.3493 -1.6608 37 1 4.2454 1.1660 0.8513 38 1 1.5555 1.0091 2.2858 39 1 3.0093 0.0696 2.7006 40 1 3.0088 1.8390 2.8925 41 1 3.0073 3.3143 0.8761 42 1 3.0080 2.5955 -0.7525 43 1 1.5548 2.4841 0.2692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490962048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:51 Heat of formation + Delta-G solvation = -1.693941 kcal Electronic energy + Delta-G solvation = -22207.597277 eV Core-core repulsion = 19060.312664 eV Total energy + Delta-G solvation = -3147.284613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54625 -39.12987 -37.95844 -35.37056 -34.40977 -33.24316 -32.65967 -31.65232 -28.37196 -28.13606 -27.10728 -24.64895 -23.87923 -21.98992 -21.78014 -20.41339 -19.59706 -18.66146 -18.20408 -17.38007 -16.64081 -16.55623 -16.24983 -15.66620 -15.36837 -15.08724 -14.86939 -14.51772 -14.40721 -14.10421 -13.91641 -13.59814 -13.25057 -13.13471 -12.93860 -12.78274 -12.48205 -12.38934 -12.14263 -11.99289 -11.95786 -11.77379 -11.57636 -11.43206 -11.17495 -11.03343 -10.98407 -10.77637 -10.45046 -10.37482 -9.45168 -8.06211 -6.19215 1.39033 1.44288 1.44930 1.52123 1.91856 2.02486 2.20315 2.45771 2.97230 3.20457 3.44732 3.79407 3.97426 4.06438 4.15580 4.20908 4.34702 4.46073 4.56156 4.60468 4.64227 4.70105 4.82393 4.88387 4.93444 4.97928 4.99770 5.07130 5.19674 5.21482 5.23260 5.36116 5.37798 5.44131 5.47305 5.50686 5.66534 5.98894 6.02520 6.14653 6.41044 6.70611 6.89547 6.92224 7.48376 7.51046 8.96984 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025457 B = 0.004078 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.626695 B = 6864.952616 C = 7427.067361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.215 4.215 3 C 0.272 3.728 4 H 0.087 0.913 5 N -0.730 5.730 6 C 0.704 3.296 7 O -0.632 6.632 8 N -0.620 5.620 9 C 0.121 3.879 10 C -0.113 4.113 11 C 0.046 3.954 12 C -0.536 4.536 13 H 0.047 0.953 14 C 0.020 3.980 15 N -0.911 5.911 16 Si 0.948 3.052 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.113 4.113 21 C 0.135 3.865 22 C -0.093 4.093 23 C -0.149 4.149 24 C -0.141 4.141 25 H 0.244 0.756 26 H 0.407 0.593 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.004 0.996 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 14.379 -0.943 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.217 4.217 3 C 0.167 3.833 4 H 0.105 0.895 5 N -0.389 5.389 6 C 0.406 3.594 7 O -0.514 6.514 8 N -0.356 5.356 9 C -0.001 4.001 10 C -0.152 4.152 11 C 0.027 3.973 12 C -0.574 4.574 13 H 0.065 0.935 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.151 4.151 21 C 0.012 3.988 22 C -0.111 4.111 23 C -0.206 4.206 24 C -0.199 4.199 25 H 0.261 0.739 26 H 0.247 0.753 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.069 14.374 -1.558 17.619 hybrid contribution 0.994 -0.772 0.548 1.373 sum -9.075 13.602 -1.009 16.383 Atomic orbital electron populations 1.25664 0.96711 0.98516 1.00029 1.23715 0.95271 1.01643 1.01057 1.17838 0.83545 0.83087 0.98835 0.89486 1.45351 1.70874 1.09459 1.13167 1.16015 0.78309 0.80742 0.84371 1.90834 1.57895 1.84052 1.18647 1.47405 1.63970 1.13477 1.10776 1.21685 0.97189 1.01398 0.79862 1.21700 0.92781 0.97368 1.03320 1.18595 0.94748 0.93206 0.90715 1.21520 0.97914 1.45204 0.92743 0.93470 1.25604 1.01076 0.95493 0.95751 1.69931 1.37104 1.49545 0.98464 0.85777 0.81134 0.78775 0.76921 1.20047 1.20833 1.20083 1.21868 0.94342 0.99999 0.98908 1.21467 0.96391 0.86713 0.94194 1.21375 1.01402 0.93076 0.95291 1.21882 1.01444 1.02379 0.94886 1.21781 1.01428 0.95409 1.01272 0.73928 0.75263 0.89489 0.91673 0.90051 0.95233 0.97826 0.92919 0.91663 0.93924 0.91500 0.90260 0.88978 0.92591 0.92945 0.90363 0.90290 0.92310 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.20 19.25 74.32 1.43 -2.76 16 2 C -0.22 -5.50 10.29 31.12 0.32 -5.18 16 3 C 0.27 6.83 2.24 43.19 0.10 6.92 16 4 H 0.09 2.49 7.65 -2.39 -0.02 2.48 16 5 N -0.73 -20.71 4.88 -466.57 -2.28 -22.98 16 6 C 0.70 25.56 8.24 179.05 1.47 27.03 16 7 O -0.63 -26.99 15.49 -4.01 -0.06 -27.05 16 8 N -0.62 -22.51 2.98 -837.73 -2.50 -25.00 16 9 C 0.12 4.20 6.40 86.22 0.55 4.75 16 10 C -0.11 -4.91 5.14 30.53 0.16 -4.75 16 11 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 12 C -0.54 -28.67 8.56 25.60 0.22 -28.45 16 13 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 14 C 0.02 1.06 5.30 84.66 0.45 1.50 16 15 N -0.91 -49.63 11.30 21.45 0.24 -49.38 16 16 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 21 C 0.14 5.04 6.42 86.36 0.55 5.59 16 22 C -0.09 -1.65 2.91 -10.79 -0.03 -1.68 16 23 C -0.15 -2.38 8.77 71.98 0.63 -1.75 16 24 C -0.14 -2.10 8.94 71.98 0.64 -1.45 16 25 H 0.24 3.35 7.80 -4.42 -0.03 3.32 16 26 H 0.41 9.96 4.32 -92.71 -0.40 9.56 16 27 H 0.09 2.44 5.57 -2.39 -0.01 2.43 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.26 13.64 8.31 -92.70 -0.77 12.87 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.08 2.97 7.03 -2.39 -0.02 2.95 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 0.95 7.23 -2.39 -0.02 0.93 16 39 H 0.05 0.86 6.51 -2.39 -0.02 0.85 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.88 7.23 -2.39 -0.02 0.86 16 Total: -1.00 -64.37 342.17 4.66 -59.71 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.59 Total: 22.85 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.64 Total: -2.55 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -4.53 Total: -97.37 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.37 4.66 -59.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490962048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.015 kcal (2) G-P(sol) polarization free energy of solvation -64.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds