Wall clock time and date at job start Tue Mar 31 2020 01:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46782 * 155.52326 * 3 2 1 5 5 C 1.34784 * 119.99696 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99950 * 180.02562 * 5 4 3 8 8 C 1.53111 * 109.52208 * 179.97438 * 7 5 4 9 9 C 1.53040 * 109.27976 * 182.37553 * 8 7 5 10 10 N 1.46844 * 109.52213 * 59.17809 * 9 8 7 11 11 C 1.46901 * 111.00526 * 174.16367 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46848 * 111.20049 * 298.25822 * 10 9 8 23 23 C 1.53045 * 109.52212 * 61.74502 * 22 10 9 24 24 H 4.40632 * 5.51457 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.47087 * 35.52108 * 3 2 1 26 26 H 1.08999 * 109.46673 * 275.52352 * 3 2 1 27 27 H 0.96999 * 120.00283 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.51840 * 300.12617 * 7 5 4 29 29 H 1.08993 * 109.50713 * 62.43516 * 8 7 5 30 30 H 1.08998 * 109.50742 * 302.31723 * 8 7 5 31 31 H 1.09001 * 109.46414 * 299.16653 * 9 8 7 32 32 H 1.08996 * 109.45780 * 179.18574 * 9 8 7 33 33 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 34 34 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 35 35 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 36 36 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46861 * 181.75554 * 22 10 9 41 41 H 1.08996 * 109.46450 * 301.72736 * 22 10 9 42 42 H 1.08996 * 109.50378 * 180.88718 * 23 22 10 43 43 H 1.08993 * 109.50521 * 60.75626 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2579 -0.5723 5 6 4.4587 1.4825 -0.6748 6 8 5.2472 0.6439 -0.2929 7 6 4.9605 2.7761 -1.2629 8 6 6.4916 2.7780 -1.2636 9 6 6.9950 4.1173 -1.8068 10 7 6.4867 5.2095 -0.9672 11 6 7.0611 6.4985 -1.3754 12 6 6.3306 7.6335 -0.6552 13 6 6.9293 8.9759 -1.0799 14 6 6.2092 10.0940 -0.3709 15 1 5.4053 9.8695 0.3144 16 6 6.5776 11.4034 -0.5964 17 7 7.5569 11.6766 -1.4305 18 14 5.6855 12.7891 0.2830 19 1 4.6317 12.2207 1.1614 20 1 6.6539 13.5575 1.1059 21 1 5.0622 13.6909 -0.7189 22 6 5.0191 5.2571 -0.9888 23 6 4.4567 3.9518 -0.4211 24 1 -1.0502 -0.0002 0.0003 25 1 3.0097 -0.8355 -0.5970 26 1 3.0093 -0.0981 1.0229 27 1 2.5031 1.9285 -0.8781 28 1 4.5952 2.8774 -2.2849 29 1 6.8563 1.9687 -1.8961 30 1 6.8562 2.6378 -0.2460 31 1 6.6415 4.2505 -2.8292 32 1 8.0848 4.1273 -1.7950 33 1 6.9499 6.6209 -2.4528 34 1 8.1190 6.5238 -1.1141 35 1 6.4417 7.5112 0.4222 36 1 5.2727 7.6081 -0.9164 37 1 6.8185 9.0986 -2.1573 38 1 7.9871 9.0010 -0.8182 39 1 7.8157 12.5979 -1.5894 40 1 4.6739 6.0950 -0.3831 41 1 4.6749 5.3849 -2.0150 42 1 3.3676 3.9810 -0.4518 43 1 4.7893 3.8301 0.6097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491101266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:47 Heat of formation + Delta-G solvation = 1.354120 kcal Electronic energy + Delta-G solvation = -20985.551162 eV Core-core repulsion = 17838.398723 eV Total energy + Delta-G solvation = -3147.152439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43200 -38.51078 -35.85112 -34.76648 -33.20592 -32.76237 -31.16492 -30.52739 -27.98931 -26.53363 -24.55346 -23.24298 -22.25209 -20.92935 -19.97716 -19.55526 -18.96897 -17.23194 -16.49901 -16.29400 -15.85833 -15.33199 -14.91918 -14.62311 -14.49829 -14.37393 -13.96302 -13.75742 -13.42661 -13.37923 -12.92646 -12.25109 -12.21942 -11.76978 -11.50302 -11.30924 -11.21932 -11.08404 -10.93092 -10.86819 -10.82034 -10.74223 -10.48986 -10.21618 -9.87077 -9.60407 -9.43427 -9.33003 -9.02538 -8.34283 -8.02638 -5.99399 -4.01461 1.97472 2.28989 2.41563 3.17400 3.31167 3.38652 3.42742 3.80290 4.11794 4.42117 4.46923 4.63291 4.71199 5.03114 5.10533 5.18940 5.21553 5.36532 5.37797 5.39663 5.46593 5.54915 5.62445 5.72834 5.83131 5.91725 5.97601 6.01594 6.09235 6.10069 6.30457 6.32190 6.70285 6.78297 7.03276 7.09201 7.13847 7.39996 7.41014 7.68754 7.83540 7.92121 8.00998 8.44023 9.05956 9.62559 11.12073 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002793 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.753664 B =10022.825874 C =11002.836717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.211 4.211 3 C 0.230 3.770 4 N -0.732 5.732 5 C 0.524 3.476 6 O -0.536 6.536 7 C -0.107 4.107 8 C -0.094 4.094 9 C 0.054 3.946 10 N -0.540 5.540 11 C 0.056 3.944 12 C -0.112 4.112 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.050 3.950 23 C -0.106 4.106 24 H 0.222 0.778 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.405 0.595 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.093 0.907 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 -22.404 -0.592 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.107 3.893 4 N -0.385 5.385 5 C 0.311 3.689 6 O -0.412 6.412 7 C -0.128 4.128 8 C -0.132 4.132 9 C -0.074 4.074 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.078 4.078 23 C -0.144 4.144 24 H 0.239 0.761 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.239 0.761 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.022 -22.977 0.096 25.068 hybrid contribution -1.274 1.308 -0.611 1.925 sum -11.296 -21.669 -0.515 24.442 Atomic orbital electron populations 1.25062 0.95978 0.97703 1.00057 1.22942 0.94293 1.02564 1.01310 1.18058 0.83089 0.87719 1.00415 1.46056 1.07641 1.19839 1.65007 1.20822 0.81372 0.88841 0.77898 1.90705 1.55129 1.46953 1.48407 1.21442 0.98601 0.92036 1.00716 1.21404 0.91865 0.96556 1.03379 1.22097 1.00301 0.90833 0.94162 1.62036 1.06406 1.04561 1.53433 1.22285 0.99665 0.87588 0.97534 1.21796 0.98590 0.94989 0.99609 1.19078 0.96254 0.89790 0.96511 1.21281 1.17729 0.91161 1.25431 0.92669 1.25034 0.95207 0.98956 0.95372 1.69976 1.28649 1.19106 1.35815 0.86550 0.79713 0.82258 0.79562 1.19736 1.21014 1.21072 1.22189 0.88383 0.97523 0.99711 1.21623 0.99489 0.93080 1.00248 0.76105 0.89133 0.89024 0.76077 0.88762 0.91131 0.90192 0.95144 0.90420 0.95331 0.90967 0.92518 0.93188 0.96821 0.96520 0.93092 0.88856 0.94968 0.91426 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.21 -1.57 13.46 -37.12 -0.50 -2.07 16 3 C 0.23 1.80 6.15 -6.83 -0.04 1.75 16 4 N -0.73 -6.01 5.44 -63.17 -0.34 -6.36 16 5 C 0.52 5.62 7.16 -10.98 -0.08 5.55 16 6 O -0.54 -7.61 15.98 5.56 0.09 -7.52 16 7 C -0.11 -1.07 2.59 -91.65 -0.24 -1.30 16 8 C -0.09 -1.07 4.68 -26.65 -0.12 -1.20 16 9 C 0.05 0.68 5.42 -3.83 -0.02 0.66 16 10 N -0.54 -7.92 4.81 -234.67 -1.13 -9.05 16 11 C 0.06 0.97 5.27 -3.83 -0.02 0.95 16 12 C -0.11 -2.28 4.40 -26.74 -0.12 -2.40 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.05 0.65 4.85 -3.83 -0.02 0.63 16 23 C -0.11 -1.10 5.26 -26.64 -0.14 -1.24 16 24 H 0.22 0.59 7.80 -54.08 -0.42 0.17 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.40 2.58 7.94 -40.82 -0.32 2.25 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.04 8.04 -51.93 -0.42 0.63 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.09 1.33 5.81 -51.93 -0.30 1.03 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.54 7.67 -51.93 -0.40 0.15 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -32.63 353.69 -8.84 -41.47 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.22 Total: -2.03 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.28 Total: -12.21 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.74 Total: -41.68 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.63 -8.84 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491101266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.823 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds