Wall clock time and date at job start Tue Mar 31 2020 01:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.46782 * 155.52326 * 3 2 1 5 5 C 1.34784 * 119.99696 * 180.02562 * 4 3 2 6 6 O 1.21275 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99950 * 180.02562 * 5 4 3 8 8 C 1.53111 * 109.52208 * 179.97438 * 7 5 4 9 9 C 1.53040 * 109.27976 * 182.37553 * 8 7 5 10 10 N 1.46844 * 109.52213 * 59.17809 * 9 8 7 11 11 C 1.46901 * 111.00526 * 174.16367 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46848 * 111.20049 * 298.25822 * 10 9 8 23 23 C 1.53045 * 109.52212 * 61.74502 * 22 10 9 24 24 H 4.40632 * 5.51457 * 180.02562 * 4 1 2 25 25 H 1.08993 * 109.47087 * 35.52108 * 3 2 1 26 26 H 1.08999 * 109.46673 * 275.52352 * 3 2 1 27 27 H 0.96999 * 120.00283 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.51840 * 300.12617 * 7 5 4 29 29 H 1.08993 * 109.50713 * 62.43516 * 8 7 5 30 30 H 1.08998 * 109.50742 * 302.31723 * 8 7 5 31 31 H 1.09001 * 109.46414 * 299.16653 * 9 8 7 32 32 H 1.08996 * 109.45780 * 179.18574 * 9 8 7 33 33 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 34 34 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 35 35 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 36 36 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 37 37 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 38 38 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46861 * 181.75554 * 22 10 9 41 41 H 1.08996 * 109.46450 * 301.72736 * 22 10 9 42 42 H 1.08996 * 109.50378 * 180.88718 * 23 22 10 43 43 H 1.08993 * 109.50521 * 60.75626 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2579 -0.5723 5 6 4.4587 1.4825 -0.6748 6 8 5.2472 0.6439 -0.2929 7 6 4.9605 2.7761 -1.2629 8 6 6.4916 2.7780 -1.2636 9 6 6.9950 4.1173 -1.8068 10 7 6.4867 5.2095 -0.9672 11 6 7.0611 6.4985 -1.3754 12 6 6.3306 7.6335 -0.6552 13 6 6.9293 8.9759 -1.0799 14 6 6.2092 10.0940 -0.3709 15 1 5.4053 9.8695 0.3144 16 6 6.5776 11.4034 -0.5964 17 7 7.5569 11.6766 -1.4305 18 14 5.6855 12.7891 0.2830 19 1 4.6317 12.2207 1.1614 20 1 6.6539 13.5575 1.1059 21 1 5.0622 13.6909 -0.7189 22 6 5.0191 5.2571 -0.9888 23 6 4.4567 3.9518 -0.4211 24 1 -1.0502 -0.0002 0.0003 25 1 3.0097 -0.8355 -0.5970 26 1 3.0093 -0.0981 1.0229 27 1 2.5031 1.9285 -0.8781 28 1 4.5952 2.8774 -2.2849 29 1 6.8563 1.9687 -1.8961 30 1 6.8562 2.6378 -0.2460 31 1 6.6415 4.2505 -2.8292 32 1 8.0848 4.1273 -1.7950 33 1 6.9499 6.6209 -2.4528 34 1 8.1190 6.5238 -1.1141 35 1 6.4417 7.5112 0.4222 36 1 5.2727 7.6081 -0.9164 37 1 6.8185 9.0986 -2.1573 38 1 7.9871 9.0010 -0.8182 39 1 7.8157 12.5979 -1.5894 40 1 4.6739 6.0950 -0.3831 41 1 4.6749 5.3849 -2.0150 42 1 3.3676 3.9810 -0.4518 43 1 4.7893 3.8301 0.6097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491101266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:45 Heat of formation + Delta-G solvation = -20.356016 kcal Electronic energy + Delta-G solvation = -20986.492584 eV Core-core repulsion = 17838.398723 eV Total energy + Delta-G solvation = -3148.093861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.31177 -39.57669 -36.59822 -36.25735 -34.79648 -33.58366 -32.58220 -31.71293 -29.01803 -27.92806 -25.90536 -24.26382 -23.84310 -21.97496 -21.23490 -20.68695 -19.56950 -18.50457 -17.93724 -17.24476 -16.76456 -16.58710 -16.20694 -16.12249 -15.73392 -15.32564 -14.91337 -14.74519 -14.56650 -14.28689 -14.14095 -13.87520 -13.58614 -13.29590 -12.99128 -12.74239 -12.49515 -12.37217 -12.20425 -12.11270 -11.79200 -11.75812 -11.52473 -11.47170 -11.39686 -11.19711 -11.02639 -10.70065 -10.53864 -10.14908 -9.19358 -8.19190 -6.29960 1.40668 1.41359 1.41675 1.54576 1.55624 1.82526 2.41726 2.51722 2.98584 3.14168 3.34370 3.59556 3.76854 3.85290 4.13639 4.22370 4.29954 4.36060 4.47661 4.49071 4.54468 4.55205 4.67165 4.71330 4.77599 4.91915 4.93302 4.99412 5.01797 5.06119 5.17424 5.19722 5.26830 5.29212 5.40338 5.53356 5.76101 5.86903 6.13280 6.25824 6.29933 6.44680 6.56847 6.87430 7.15198 7.39302 8.92975 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.002793 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.753664 B =10022.825874 C =11002.836717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.248 4.248 3 C 0.230 3.770 4 N -0.719 5.719 5 C 0.526 3.474 6 O -0.576 6.576 7 C -0.101 4.101 8 C -0.088 4.088 9 C 0.056 3.944 10 N -0.549 5.549 11 C 0.068 3.932 12 C -0.095 4.095 13 C 0.024 3.976 14 C -0.539 4.539 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.047 3.953 23 C -0.097 4.097 24 H 0.253 0.747 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.416 0.584 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.027 0.973 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.060 0.940 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.097 0.903 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 -22.869 -0.471 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.371 5.371 5 C 0.313 3.687 6 O -0.455 6.455 7 C -0.122 4.122 8 C -0.126 4.126 9 C -0.072 4.072 10 N -0.274 5.274 11 C -0.060 4.060 12 C -0.133 4.133 13 C -0.013 4.013 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.081 4.081 23 C -0.135 4.135 24 H 0.269 0.731 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.252 0.748 28 H 0.135 0.865 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.009 0.991 38 H 0.008 0.992 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.115 0.885 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.545 -23.451 0.216 26.596 hybrid contribution -0.537 1.414 -0.663 1.652 sum -13.082 -22.037 -0.447 25.631 Atomic orbital electron populations 1.25862 0.96729 0.95814 0.98196 1.23003 0.94516 1.04308 1.03026 1.17994 0.83843 0.87360 1.00013 1.45957 1.07029 1.20231 1.63917 1.20878 0.81807 0.88570 0.77421 1.90694 1.56260 1.48232 1.50291 1.21397 0.97480 0.91479 1.01830 1.21311 0.93113 0.95978 1.02238 1.22127 1.00364 0.90372 0.94322 1.62003 1.07663 1.03601 1.54104 1.22006 0.98965 0.88110 0.96909 1.21541 0.99060 0.93279 0.99404 1.18985 0.94884 0.92544 0.94904 1.21717 1.18064 0.92253 1.25705 0.92154 1.26000 0.95991 1.01932 0.96111 1.70107 1.30182 1.19940 1.37260 0.85396 0.78612 0.78579 0.78447 1.18462 1.20527 1.20319 1.22239 0.87209 0.98514 1.00110 1.21552 1.01102 0.91651 0.99181 0.73124 0.89307 0.89638 0.74775 0.86503 0.90455 0.92144 0.94105 0.90538 0.95447 0.91746 0.93047 0.92189 0.99064 0.99202 0.92817 0.90228 0.94136 0.88498 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 19.25 74.32 1.43 0.03 16 2 C -0.25 -3.28 13.46 31.12 0.42 -2.86 16 3 C 0.23 3.41 6.15 84.57 0.52 3.93 16 4 N -0.72 -10.61 5.44 -472.15 -2.57 -13.18 16 5 C 0.53 10.62 7.16 87.66 0.63 11.25 16 6 O -0.58 -16.18 15.98 -3.01 -0.05 -16.22 16 7 C -0.10 -1.82 2.59 -11.46 -0.03 -1.84 16 8 C -0.09 -1.93 4.68 30.64 0.14 -1.79 16 9 C 0.06 1.33 5.42 86.33 0.47 1.80 16 10 N -0.55 -15.68 4.81 -896.36 -4.31 -19.99 16 11 C 0.07 2.33 5.27 86.30 0.46 2.79 16 12 C -0.10 -3.89 4.40 30.59 0.13 -3.76 16 13 C 0.02 1.30 4.97 29.85 0.15 1.44 16 14 C -0.54 -30.80 9.11 25.60 0.23 -30.57 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 18 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 19 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C 0.05 1.14 4.85 86.33 0.42 1.56 16 23 C -0.10 -1.80 5.26 30.65 0.16 -1.64 16 24 H 0.25 0.42 7.80 -4.41 -0.03 0.38 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.42 4.24 7.94 -92.71 -0.74 3.50 16 28 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 33 H 0.03 0.94 8.08 -2.39 -0.02 0.93 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 2.32 6.21 -2.39 -0.01 2.31 16 37 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 40 H 0.08 2.16 5.81 -2.39 -0.01 2.15 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.25 7.67 -2.39 -0.02 1.23 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.04 353.69 1.22 -69.82 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.24 Total: 9.56 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.59 Total: -19.37 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -6.59 Total: -90.10 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.05 Total: -16.22 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.04 1.22 -69.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491101266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.465 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds