Wall clock time and date at job start Tue Mar 31 2020 00:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47098 * 338.03968 * 3 2 1 5 5 C 1.53006 * 109.46701 * 218.04267 * 3 2 1 6 6 C 1.53004 * 109.46849 * 174.99964 * 5 3 2 7 7 C 1.53001 * 109.46879 * 179.97438 * 6 5 3 8 8 N 1.46490 * 109.47224 * 98.04297 * 3 2 1 9 9 C 1.34779 * 119.99870 * 274.99888 * 8 3 2 10 10 O 1.21582 * 120.00299 * 354.91792 * 9 8 3 11 11 N 1.34779 * 119.99716 * 174.92231 * 9 8 3 12 12 C 1.46919 * 120.63354 * 4.73827 * 11 9 8 13 13 C 1.52763 * 109.01029 * 233.58632 * 12 11 9 14 14 C 1.53041 * 109.38171 * 305.58640 * 13 12 11 15 15 C 1.50701 * 109.44653 * 181.24945 * 14 13 12 16 16 H 1.07995 * 120.00395 * 239.94264 * 15 14 13 17 17 C 1.37884 * 119.99585 * 59.94720 * 15 14 13 18 18 N 1.31509 * 120.00248 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99711 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47450 * 89.99884 * 19 17 15 21 21 H 1.48504 * 109.47088 * 209.99457 * 19 17 15 22 22 H 1.48498 * 109.47479 * 329.99841 * 19 17 15 23 23 C 1.53041 * 109.53599 * 61.24133 * 14 13 12 24 24 C 1.46927 * 120.62727 * 185.02262 * 11 9 8 25 25 H 4.18743 * 15.04069 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.47014 * 295.00116 * 5 3 2 27 27 H 1.08998 * 109.47088 * 55.00113 * 5 3 2 28 28 H 1.09000 * 109.46929 * 299.99865 * 6 5 3 29 29 H 1.08998 * 109.47154 * 60.00190 * 6 5 3 30 30 H 1.09002 * 109.47281 * 300.00334 * 7 6 5 31 31 H 1.08998 * 109.46790 * 60.00313 * 7 6 5 32 32 H 1.09003 * 109.46926 * 180.02562 * 7 6 5 33 33 H 0.97004 * 120.00113 * 94.99538 * 8 3 2 34 34 H 1.09003 * 109.59078 * 353.42095 * 12 11 9 35 35 H 1.09005 * 109.58849 * 113.84806 * 12 11 9 36 36 H 1.08999 * 109.56464 * 185.55447 * 13 12 11 37 37 H 1.08999 * 109.38777 * 65.51633 * 13 12 11 38 38 H 1.08993 * 109.46422 * 301.22156 * 14 13 12 39 39 H 0.96998 * 120.00138 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.49495 * 178.67680 * 23 14 13 41 41 H 1.09003 * 109.52363 * 58.60309 * 23 14 13 42 42 H 1.08996 * 109.58703 * 246.15409 * 24 11 9 43 43 H 1.08997 * 109.58549 * 6.43513 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9523 0.3843 5 6 3.1554 1.1370 0.8890 6 6 4.6803 1.0617 0.9892 7 6 5.1898 2.1984 1.8776 8 7 3.1343 0.1941 -1.3675 9 6 3.2635 -0.8635 -2.1929 10 8 3.0638 -1.9880 -1.7759 11 7 3.6142 -0.6746 -3.4805 12 6 3.9594 0.6656 -3.9734 13 6 3.1026 0.9815 -5.1980 14 6 3.2685 -0.1320 -6.2348 15 6 2.4477 0.1933 -7.4561 16 1 1.6659 -0.4794 -7.7762 17 6 2.6951 1.3499 -8.1649 18 7 3.6469 2.1693 -7.7749 19 14 1.6782 1.7527 -9.6792 20 1 0.4887 2.5470 -9.2798 21 1 2.5010 2.5392 -10.6330 22 1 1.2365 0.4924 -10.3286 23 6 2.7936 -1.4598 -5.6403 24 6 3.6524 -1.8042 -4.4193 25 1 -1.0500 -0.0011 -0.0001 26 1 2.8666 2.0946 0.4558 27 1 2.7208 1.0425 1.8841 28 1 4.9691 0.1041 1.4224 29 1 5.1149 1.1562 -0.0059 30 1 4.9009 3.1558 1.4440 31 1 4.7552 2.1043 2.8728 32 1 6.2762 2.1450 1.9486 33 1 3.3645 1.0834 -1.6791 34 1 3.7661 1.4028 -3.1940 35 1 5.0131 0.6926 -4.2514 36 1 3.4191 1.9308 -5.6300 37 1 2.0562 1.0482 -4.9001 38 1 4.3188 -0.2143 -6.5144 39 1 3.8207 2.9831 -8.2733 40 1 2.8901 -2.2479 -6.3870 41 1 1.7502 -1.3711 -5.3378 42 1 4.6804 -1.9828 -4.7343 43 1 3.2588 -2.6968 -3.9332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491438204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:55 Heat of formation + Delta-G solvation = 9.412356 kcal Electronic energy + Delta-G solvation = -22047.058117 eV Core-core repulsion = 18900.255109 eV Total energy + Delta-G solvation = -3146.803008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08504 -37.55294 -36.31371 -33.71693 -33.47797 -32.47038 -30.99912 -30.05430 -28.76298 -26.10455 -24.31089 -22.96725 -22.26932 -21.27986 -20.35548 -18.95630 -18.36110 -17.54452 -16.31730 -16.26680 -15.24240 -15.07930 -14.69367 -14.42896 -14.20080 -13.96923 -13.58420 -13.12207 -12.78617 -12.74010 -12.51187 -12.35925 -12.09059 -11.76411 -11.60008 -11.31977 -11.26248 -10.94923 -10.87788 -10.64576 -10.53634 -10.36392 -10.14466 -10.09502 -9.73270 -9.54152 -9.19001 -9.09903 -8.93269 -8.38508 -7.90790 -6.04005 -4.09819 2.52973 2.87882 3.27589 3.34624 3.35391 3.38404 3.55265 4.24923 4.32134 4.40417 4.75931 4.78459 4.90901 5.25023 5.25575 5.34693 5.48020 5.57508 5.58424 5.71323 5.80738 5.88451 5.94989 6.00004 6.01275 6.08646 6.12680 6.18861 6.29435 6.48004 6.63869 6.68487 6.86594 6.99925 7.14353 7.22390 7.45098 7.66519 7.66592 7.92110 8.02761 8.30753 8.40198 8.93502 8.94338 9.55257 11.01487 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.004076 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.505349 B = 6868.452860 C = 7104.505218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.195 4.195 3 C 0.272 3.728 4 H 0.108 0.892 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.152 4.152 8 N -0.741 5.741 9 C 0.708 3.292 10 O -0.602 6.602 11 N -0.617 5.617 12 C 0.111 3.889 13 C -0.124 4.124 14 C 0.050 3.950 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.130 3.870 25 H 0.216 0.784 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 0.724 16.242 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.197 4.197 3 C 0.167 3.833 4 H 0.126 0.874 5 C -0.158 4.158 6 C -0.162 4.162 7 C -0.209 4.209 8 N -0.399 5.399 9 C 0.410 3.590 10 O -0.482 6.482 11 N -0.353 5.353 12 C -0.012 4.012 13 C -0.163 4.163 14 C 0.031 3.969 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.163 4.163 24 C 0.007 3.993 25 H 0.232 0.768 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.236 0.764 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.230 0.072 16.454 16.500 hybrid contribution -0.789 0.854 -1.117 1.612 sum 0.441 0.926 15.337 15.372 Atomic orbital electron populations 1.24920 0.95907 1.01282 0.99061 1.23655 0.94903 1.00010 1.01097 1.17601 0.82831 1.00680 0.82231 0.87411 1.21870 0.96332 0.97835 0.99761 1.21533 0.94491 0.99356 1.00861 1.21767 1.00970 0.98536 0.99637 1.45337 1.71819 1.09969 1.12821 1.15848 0.77804 0.84298 0.81091 1.90850 1.59306 1.22294 1.75714 1.47415 1.70569 1.10229 1.07110 1.21805 1.00158 0.81598 0.97613 1.21944 0.96968 1.04382 0.92991 1.18614 0.96883 0.88747 0.92632 1.21222 1.17849 1.05962 1.09893 0.92717 1.24952 0.95180 0.96327 0.97480 1.69830 1.31124 1.12339 1.39861 0.86621 0.80149 0.78405 0.82987 1.20777 1.21248 1.19949 1.22027 0.98654 1.00561 0.95016 1.21570 0.99997 0.88017 0.89677 0.76758 0.90946 0.90045 0.91604 0.91404 0.92644 0.92796 0.92628 0.76367 0.92602 0.91923 0.87808 0.94363 0.95416 0.93011 0.92108 0.93054 0.92433 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 19.25 29.55 0.57 -1.94 16 2 C -0.20 -2.77 12.84 -37.12 -0.48 -3.24 16 3 C 0.27 3.50 2.46 -70.72 -0.17 3.32 16 4 H 0.11 1.50 7.51 -51.93 -0.39 1.11 16 5 C -0.12 -1.11 4.71 -26.73 -0.13 -1.23 16 6 C -0.12 -1.08 5.82 -26.73 -0.16 -1.23 16 7 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 8 N -0.74 -10.76 4.41 -61.45 -0.27 -11.03 16 9 C 0.71 13.00 8.24 -86.91 -0.72 12.28 16 10 O -0.60 -12.82 15.41 5.29 0.08 -12.74 16 11 N -0.62 -11.39 2.98 -178.77 -0.53 -11.92 16 12 C 0.11 1.97 6.40 -3.94 -0.03 1.94 16 13 C -0.12 -2.73 5.14 -26.83 -0.14 -2.87 16 14 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 15 C -0.51 -13.63 8.56 -34.44 -0.29 -13.93 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.30 11.30 55.43 0.63 -23.68 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.59 5.30 -26.61 -0.14 -2.73 16 24 C 0.13 2.45 6.42 -3.71 -0.02 2.43 16 25 H 0.22 2.02 7.80 -54.09 -0.42 1.59 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.40 5.12 6.06 -40.82 -0.25 4.87 16 34 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.49 7.03 -51.93 -0.37 1.12 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -30.43 348.89 -8.52 -38.95 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.04 Total: 4.74 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.62 Total: -5.40 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.18 Total: -46.63 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.43 -8.52 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491438204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.365 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds