Wall clock time and date at job start Tue Mar 31 2020 00:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47098 * 338.03968 * 3 2 1 5 5 C 1.53006 * 109.46701 * 218.04267 * 3 2 1 6 6 C 1.53004 * 109.46849 * 174.99964 * 5 3 2 7 7 C 1.53001 * 109.46879 * 179.97438 * 6 5 3 8 8 N 1.46490 * 109.47224 * 98.04297 * 3 2 1 9 9 C 1.34779 * 119.99870 * 274.99888 * 8 3 2 10 10 O 1.21582 * 120.00299 * 354.91792 * 9 8 3 11 11 N 1.34779 * 119.99716 * 174.92231 * 9 8 3 12 12 C 1.46919 * 120.63354 * 4.73827 * 11 9 8 13 13 C 1.52763 * 109.01029 * 233.58632 * 12 11 9 14 14 C 1.53041 * 109.38171 * 305.58640 * 13 12 11 15 15 C 1.50701 * 109.44653 * 181.24945 * 14 13 12 16 16 H 1.07995 * 120.00395 * 239.94264 * 15 14 13 17 17 C 1.37884 * 119.99585 * 59.94720 * 15 14 13 18 18 N 1.31509 * 120.00248 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99711 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47450 * 89.99884 * 19 17 15 21 21 H 1.48504 * 109.47088 * 209.99457 * 19 17 15 22 22 H 1.48498 * 109.47479 * 329.99841 * 19 17 15 23 23 C 1.53041 * 109.53599 * 61.24133 * 14 13 12 24 24 C 1.46927 * 120.62727 * 185.02262 * 11 9 8 25 25 H 4.18743 * 15.04069 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.47014 * 295.00116 * 5 3 2 27 27 H 1.08998 * 109.47088 * 55.00113 * 5 3 2 28 28 H 1.09000 * 109.46929 * 299.99865 * 6 5 3 29 29 H 1.08998 * 109.47154 * 60.00190 * 6 5 3 30 30 H 1.09002 * 109.47281 * 300.00334 * 7 6 5 31 31 H 1.08998 * 109.46790 * 60.00313 * 7 6 5 32 32 H 1.09003 * 109.46926 * 180.02562 * 7 6 5 33 33 H 0.97004 * 120.00113 * 94.99538 * 8 3 2 34 34 H 1.09003 * 109.59078 * 353.42095 * 12 11 9 35 35 H 1.09005 * 109.58849 * 113.84806 * 12 11 9 36 36 H 1.08999 * 109.56464 * 185.55447 * 13 12 11 37 37 H 1.08999 * 109.38777 * 65.51633 * 13 12 11 38 38 H 1.08993 * 109.46422 * 301.22156 * 14 13 12 39 39 H 0.96998 * 120.00138 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.49495 * 178.67680 * 23 14 13 41 41 H 1.09003 * 109.52363 * 58.60309 * 23 14 13 42 42 H 1.08996 * 109.58703 * 246.15409 * 24 11 9 43 43 H 1.08997 * 109.58549 * 6.43513 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.9523 0.3843 5 6 3.1554 1.1370 0.8890 6 6 4.6803 1.0617 0.9892 7 6 5.1898 2.1984 1.8776 8 7 3.1343 0.1941 -1.3675 9 6 3.2635 -0.8635 -2.1929 10 8 3.0638 -1.9880 -1.7759 11 7 3.6142 -0.6746 -3.4805 12 6 3.9594 0.6656 -3.9734 13 6 3.1026 0.9815 -5.1980 14 6 3.2685 -0.1320 -6.2348 15 6 2.4477 0.1933 -7.4561 16 1 1.6659 -0.4794 -7.7762 17 6 2.6951 1.3499 -8.1649 18 7 3.6469 2.1693 -7.7749 19 14 1.6782 1.7527 -9.6792 20 1 0.4887 2.5470 -9.2798 21 1 2.5010 2.5392 -10.6330 22 1 1.2365 0.4924 -10.3286 23 6 2.7936 -1.4598 -5.6403 24 6 3.6524 -1.8042 -4.4193 25 1 -1.0500 -0.0011 -0.0001 26 1 2.8666 2.0946 0.4558 27 1 2.7208 1.0425 1.8841 28 1 4.9691 0.1041 1.4224 29 1 5.1149 1.1562 -0.0059 30 1 4.9009 3.1558 1.4440 31 1 4.7552 2.1043 2.8728 32 1 6.2762 2.1450 1.9486 33 1 3.3645 1.0834 -1.6791 34 1 3.7661 1.4028 -3.1940 35 1 5.0131 0.6926 -4.2514 36 1 3.4191 1.9308 -5.6300 37 1 2.0562 1.0482 -4.9001 38 1 4.3188 -0.2143 -6.5144 39 1 3.8207 2.9831 -8.2733 40 1 2.8901 -2.2479 -6.3870 41 1 1.7502 -1.3711 -5.3378 42 1 4.6804 -1.9828 -4.7343 43 1 3.2588 -2.6968 -3.9332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491438204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:54 Heat of formation + Delta-G solvation = -6.902714 kcal Electronic energy + Delta-G solvation = -22047.765592 eV Core-core repulsion = 18900.255109 eV Total energy + Delta-G solvation = -3147.510482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49907 -38.92407 -37.62282 -35.36650 -34.55764 -33.74211 -32.63853 -31.66747 -29.74405 -27.88238 -25.31033 -24.58907 -23.86615 -22.07689 -21.87804 -20.46945 -19.54895 -18.91845 -18.25141 -17.53858 -16.58979 -16.49244 -16.07902 -15.65138 -15.33901 -15.20629 -14.91794 -14.67815 -14.47764 -14.21316 -13.93331 -13.41971 -13.25597 -13.14180 -12.82265 -12.80486 -12.53896 -12.45578 -12.15257 -12.03039 -11.93424 -11.61894 -11.52995 -11.44921 -11.16998 -11.07146 -11.00662 -10.78510 -10.43552 -10.37486 -9.44222 -8.07561 -6.20408 1.35918 1.41284 1.43608 1.52377 1.85733 2.10881 2.12780 2.44546 2.99469 3.19077 3.38305 3.91854 4.05073 4.08712 4.20718 4.22118 4.34991 4.46630 4.46755 4.57868 4.65824 4.71336 4.80362 4.88073 4.89772 4.97798 5.00715 5.12769 5.20193 5.22181 5.28382 5.30324 5.43200 5.48099 5.49495 5.51732 5.65714 5.98669 6.03259 6.13375 6.40184 6.65125 6.88451 6.94014 7.47123 7.52539 8.95816 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.004076 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.505349 B = 6868.452860 C = 7104.505218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.234 4.234 3 C 0.270 3.730 4 H 0.094 0.906 5 C -0.108 4.108 6 C -0.123 4.123 7 C -0.149 4.149 8 N -0.728 5.728 9 C 0.705 3.295 10 O -0.633 6.633 11 N -0.621 5.621 12 C 0.121 3.879 13 C -0.114 4.114 14 C 0.047 3.953 15 C -0.536 4.536 16 H 0.045 0.955 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 0.947 3.053 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.113 4.113 24 C 0.136 3.864 25 H 0.244 0.756 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.408 0.592 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.023 0.977 38 H 0.006 0.994 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 1.538 17.245 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.236 4.236 3 C 0.165 3.835 4 H 0.112 0.888 5 C -0.146 4.146 6 C -0.161 4.161 7 C -0.206 4.206 8 N -0.385 5.385 9 C 0.407 3.593 10 O -0.515 6.515 11 N -0.357 5.357 12 C -0.001 4.001 13 C -0.153 4.153 14 C 0.028 3.972 15 C -0.574 4.574 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.152 4.152 24 C 0.013 3.987 25 H 0.261 0.739 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.986 0.914 17.477 17.529 hybrid contribution -0.758 0.584 -1.424 1.715 sum 0.228 1.497 16.053 16.125 Atomic orbital electron populations 1.25763 0.96905 1.00112 0.97638 1.24110 0.95803 1.01206 1.02436 1.17793 0.82622 1.01560 0.81537 0.88812 1.21831 0.96590 0.96569 0.99626 1.21518 0.94011 0.99870 1.00713 1.21743 1.01162 0.97979 0.99737 1.45274 1.70800 1.09381 1.13092 1.15994 0.77506 0.84632 0.81149 1.90826 1.60637 1.23807 1.76249 1.47406 1.70770 1.10173 1.07306 1.21684 0.99513 0.82095 0.96801 1.21702 0.96757 1.02587 0.94209 1.18588 0.95123 0.90841 0.92625 1.21546 1.18210 1.06210 1.11409 0.93629 1.25601 0.96173 0.96243 0.99921 1.69931 1.31899 1.12493 1.40671 0.85724 0.78845 0.78091 0.79977 1.20400 1.20732 1.19830 1.21871 0.98093 0.99256 0.95966 1.21460 1.00209 0.88233 0.88831 0.73926 0.90186 0.88593 0.91934 0.92283 0.92299 0.91962 0.92377 0.75322 0.89395 0.91218 0.90037 0.95824 0.97554 0.92896 0.91656 0.94384 0.91138 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.50 19.25 74.32 1.43 -3.07 16 2 C -0.23 -6.34 12.84 31.12 0.40 -5.94 16 3 C 0.27 6.63 2.46 43.19 0.11 6.73 16 4 H 0.09 2.58 7.51 -2.39 -0.02 2.56 16 5 C -0.11 -1.79 4.71 30.60 0.14 -1.64 16 6 C -0.12 -1.92 5.82 30.60 0.18 -1.74 16 7 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 8 N -0.73 -20.16 4.41 -466.58 -2.06 -22.22 16 9 C 0.71 25.28 8.24 179.05 1.48 26.76 16 10 O -0.63 -26.74 15.41 -3.97 -0.06 -26.80 16 11 N -0.62 -22.34 2.98 -837.75 -2.50 -24.83 16 12 C 0.12 4.17 6.40 86.22 0.55 4.72 16 13 C -0.11 -5.00 5.14 30.53 0.16 -4.84 16 14 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 15 C -0.54 -28.93 8.56 25.60 0.22 -28.71 16 16 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 17 C 0.02 1.05 5.30 84.66 0.45 1.50 16 18 N -0.91 -49.76 11.30 21.45 0.24 -49.52 16 19 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.11 -4.75 5.30 30.67 0.16 -4.58 16 24 C 0.14 5.04 6.42 86.36 0.55 5.59 16 25 H 0.24 3.94 7.80 -4.42 -0.03 3.91 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.02 7.75 -2.39 -0.02 1.00 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.41 9.65 6.06 -92.71 -0.56 9.09 16 34 H 0.09 2.44 5.57 -2.39 -0.01 2.42 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 40 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 2.93 7.03 -2.39 -0.02 2.91 16 Total: -1.00 -65.11 348.89 4.59 -60.52 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.42 Total: 22.27 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 6.52 Total: -4.15 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.31 Total: -96.57 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -65.11 4.59 -60.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491438204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.619 kcal (2) G-P(sol) polarization free energy of solvation -65.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds