Wall clock time and date at job start Tue Mar 31 2020 00:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47179 * 84.10368 * 3 2 1 5 5 C 1.53003 * 109.47428 * 204.10110 * 3 2 1 6 6 C 1.52995 * 109.47175 * 185.00136 * 5 3 2 7 7 C 1.53000 * 109.46829 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47411 * 324.10617 * 3 2 1 9 9 C 1.34769 * 120.00303 * 84.99478 * 8 3 2 10 10 O 1.21587 * 120.00247 * 5.07791 * 9 8 3 11 11 N 1.34784 * 119.99901 * 185.07754 * 9 8 3 12 12 C 1.46930 * 120.62852 * 174.68116 * 11 9 8 13 13 C 1.52756 * 109.00954 * 233.58327 * 12 11 9 14 14 C 1.53037 * 109.38419 * 305.59210 * 13 12 11 15 15 C 1.50697 * 109.45076 * 181.25404 * 14 13 12 16 16 H 1.08004 * 120.00285 * 239.94067 * 15 14 13 17 17 C 1.37875 * 120.00283 * 59.93153 * 15 14 13 18 18 N 1.31512 * 119.99845 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00407 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47297 * 90.00158 * 19 17 15 21 21 H 1.48499 * 109.47055 * 210.00842 * 19 17 15 22 22 H 1.48500 * 109.46819 * 330.00162 * 19 17 15 23 23 C 1.53041 * 109.53767 * 61.23674 * 14 13 12 24 24 C 1.46920 * 120.63103 * 354.96461 * 11 9 8 25 25 H 4.18736 * 15.03905 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46614 * 305.00248 * 5 3 2 27 27 H 1.08996 * 109.46700 * 64.99929 * 5 3 2 28 28 H 1.09002 * 109.47441 * 299.99606 * 6 5 3 29 29 H 1.08996 * 109.47476 * 60.00268 * 6 5 3 30 30 H 1.09000 * 109.47411 * 299.99683 * 7 6 5 31 31 H 1.08999 * 109.47565 * 60.00263 * 7 6 5 32 32 H 1.09003 * 109.47173 * 179.97438 * 7 6 5 33 33 H 0.97000 * 119.99420 * 265.00205 * 8 3 2 34 34 H 1.09001 * 109.58755 * 353.42146 * 12 11 9 35 35 H 1.09005 * 109.58273 * 113.83974 * 12 11 9 36 36 H 1.08996 * 109.56401 * 185.55081 * 13 12 11 37 37 H 1.09006 * 109.38229 * 65.51760 * 13 12 11 38 38 H 1.09000 * 109.45633 * 301.21844 * 14 13 12 39 39 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.49605 * 178.68553 * 23 14 13 41 41 H 1.08994 * 109.52527 * 58.60850 * 23 14 13 42 42 H 1.09008 * 109.58542 * 246.15455 * 24 11 9 43 43 H 1.09001 * 109.58773 * 6.43383 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1048 -1.0222 5 6 3.1555 1.3176 0.5890 6 6 4.6802 1.3713 0.4750 7 6 5.1897 2.6880 1.0646 8 7 3.1349 -1.1181 0.8098 9 6 3.2641 -2.3418 0.2603 10 8 3.0638 -2.4987 -0.9286 11 7 3.6154 -3.3919 1.0288 12 6 3.6474 -4.7506 0.4705 13 6 2.7949 -5.6681 1.3451 14 6 3.2712 -5.5731 2.7963 15 6 2.4513 -6.5009 3.6554 16 1 1.8705 -6.1054 4.4756 17 6 2.4423 -7.8546 3.3942 18 7 3.1497 -8.3364 2.3957 19 14 1.4254 -9.0046 4.4586 20 1 0.0629 -9.1366 3.8830 21 1 2.0746 -10.3393 4.5055 22 1 1.3304 -8.4519 5.8336 23 6 3.1061 -4.1361 3.2961 24 6 3.9676 -3.2005 2.4423 25 1 -1.0499 0.0005 -0.0001 26 1 2.7204 2.1532 0.0407 27 1 2.8671 1.3820 1.6382 28 1 5.1153 0.5357 1.0233 29 1 4.9686 1.3069 -0.5742 30 1 4.7547 3.5239 0.5167 31 1 4.9014 2.7519 2.1138 32 1 6.2760 2.7261 0.9838 33 1 3.3655 -0.9779 1.7415 34 1 3.2469 -4.7387 -0.5432 35 1 4.6745 -5.1154 0.4555 36 1 2.8909 -6.6966 0.9972 37 1 1.7513 -5.3592 1.2837 38 1 4.3215 -5.8589 2.8531 39 1 3.1437 -9.2888 2.2121 40 1 3.4237 -4.0742 4.3371 41 1 2.0599 -3.8408 3.2169 42 1 5.0213 -3.4363 2.5915 43 1 3.7808 -2.1655 2.7285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491438205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:58 Heat of formation + Delta-G solvation = 10.076904 kcal Electronic energy + Delta-G solvation = -21999.779480 eV Core-core repulsion = 18853.005290 eV Total energy + Delta-G solvation = -3146.774191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09234 -37.56340 -36.32559 -33.76313 -33.48919 -32.40502 -30.99491 -30.16138 -28.71535 -26.10613 -24.32872 -23.03197 -22.22227 -21.31086 -20.36266 -18.96087 -18.36910 -17.55802 -16.45160 -16.17432 -15.25031 -15.08787 -14.66524 -14.44687 -14.21494 -13.97114 -13.65803 -13.12555 -12.79402 -12.73890 -12.51137 -12.28606 -12.15308 -11.83171 -11.76174 -11.31035 -11.11779 -10.94027 -10.91195 -10.65913 -10.55666 -10.39992 -10.12158 -10.04514 -9.73250 -9.54946 -9.19942 -9.13380 -8.89505 -8.36212 -7.89885 -6.01118 -4.07881 2.51235 2.86133 3.29214 3.34192 3.36338 3.38699 3.55392 4.21842 4.29119 4.41752 4.72576 4.74731 4.87560 5.21485 5.28512 5.29543 5.37609 5.48919 5.53952 5.68989 5.76419 5.82304 5.86608 5.95499 5.99302 6.07194 6.08907 6.28859 6.43712 6.50790 6.60464 6.64237 6.82225 6.98602 7.14764 7.25121 7.49659 7.64859 7.71845 7.94033 8.06947 8.30764 8.41181 8.94528 8.95394 9.57144 11.04269 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.003815 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.587655 B = 7338.449638 C = 7510.023811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.196 4.196 3 C 0.272 3.728 4 H 0.109 0.891 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.152 4.152 8 N -0.743 5.743 9 C 0.707 3.293 10 O -0.598 6.598 11 N -0.617 5.617 12 C 0.127 3.873 13 C -0.124 4.124 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.124 4.124 24 C 0.113 3.887 25 H 0.216 0.784 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 18.751 -1.797 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C 0.166 3.834 4 H 0.126 0.874 5 C -0.157 4.157 6 C -0.162 4.162 7 C -0.209 4.209 8 N -0.401 5.401 9 C 0.408 3.592 10 O -0.477 6.477 11 N -0.353 5.353 12 C 0.006 3.994 13 C -0.163 4.163 14 C 0.032 3.968 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.162 4.162 24 C -0.010 4.010 25 H 0.232 0.768 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.009 18.424 -2.744 18.735 hybrid contribution -0.816 -0.704 1.115 1.551 sum 1.193 17.720 -1.629 17.835 Atomic orbital electron populations 1.24926 0.95915 0.99687 1.00571 1.23646 0.94898 1.00737 1.00450 1.17601 0.82835 0.85739 0.97187 0.87375 1.21863 0.96315 0.95567 1.01999 1.21531 0.94495 0.98292 1.01923 1.21768 1.00981 0.97241 1.00916 1.45340 1.71993 1.07976 1.14784 1.15869 0.77894 0.80362 0.85025 1.90865 1.58973 1.84005 1.13825 1.47453 1.70462 1.06927 1.10453 1.21683 1.00506 0.79076 0.98182 1.21956 0.96710 1.00302 0.97295 1.18615 0.97112 0.89099 0.92020 1.21184 1.28201 0.91739 1.14061 0.92785 1.24962 0.95480 0.98236 0.95285 1.69842 1.40751 1.13307 1.28960 0.86621 0.80365 0.80282 0.80879 1.20752 1.21246 1.19997 1.22011 0.98385 0.98049 0.97769 1.21713 0.99622 0.98617 0.81059 0.76752 0.90034 0.91021 0.91453 0.91552 0.92767 0.92700 0.92628 0.76605 0.90635 0.92543 0.87785 0.94472 0.95439 0.92945 0.92174 0.92947 0.91820 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 19.25 29.55 0.57 -1.89 16 2 C -0.20 -2.73 12.84 -37.13 -0.48 -3.20 16 3 C 0.27 3.40 2.46 -70.72 -0.17 3.23 16 4 H 0.11 1.49 7.51 -51.93 -0.39 1.10 16 5 C -0.12 -1.04 4.71 -26.73 -0.13 -1.16 16 6 C -0.12 -1.01 5.82 -26.73 -0.16 -1.17 16 7 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 8 N -0.74 -10.38 4.41 -61.44 -0.27 -10.65 16 9 C 0.71 12.98 8.24 -86.92 -0.72 12.26 16 10 O -0.60 -13.02 15.41 5.29 0.08 -12.94 16 11 N -0.62 -11.39 2.98 -178.77 -0.53 -11.92 16 12 C 0.13 2.62 6.39 -3.93 -0.03 2.60 16 13 C -0.12 -2.91 5.14 -26.84 -0.14 -3.05 16 14 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 15 C -0.51 -13.72 8.56 -34.44 -0.29 -14.02 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.84 11.31 55.43 0.63 -24.21 16 19 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 24 C 0.11 1.82 6.43 -3.72 -0.02 1.79 16 25 H 0.22 1.98 7.80 -54.09 -0.42 1.56 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 4.66 6.06 -40.82 -0.25 4.42 16 34 H 0.08 1.61 7.04 -51.93 -0.37 1.24 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -31.12 348.89 -8.52 -39.64 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.04 Total: 4.06 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.62 Total: -5.23 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.18 Total: -46.78 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.12 -8.52 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491438205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.717 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds