Wall clock time and date at job start Tue Mar 31 2020 00:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47179 * 84.10368 * 3 2 1 5 5 C 1.53003 * 109.47428 * 204.10110 * 3 2 1 6 6 C 1.52995 * 109.47175 * 185.00136 * 5 3 2 7 7 C 1.53000 * 109.46829 * 180.02562 * 6 5 3 8 8 N 1.46504 * 109.47411 * 324.10617 * 3 2 1 9 9 C 1.34769 * 120.00303 * 84.99478 * 8 3 2 10 10 O 1.21587 * 120.00247 * 5.07791 * 9 8 3 11 11 N 1.34784 * 119.99901 * 185.07754 * 9 8 3 12 12 C 1.46930 * 120.62852 * 174.68116 * 11 9 8 13 13 C 1.52756 * 109.00954 * 233.58327 * 12 11 9 14 14 C 1.53037 * 109.38419 * 305.59210 * 13 12 11 15 15 C 1.50697 * 109.45076 * 181.25404 * 14 13 12 16 16 H 1.08004 * 120.00285 * 239.94067 * 15 14 13 17 17 C 1.37875 * 120.00283 * 59.93153 * 15 14 13 18 18 N 1.31512 * 119.99845 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00407 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47297 * 90.00158 * 19 17 15 21 21 H 1.48499 * 109.47055 * 210.00842 * 19 17 15 22 22 H 1.48500 * 109.46819 * 330.00162 * 19 17 15 23 23 C 1.53041 * 109.53767 * 61.23674 * 14 13 12 24 24 C 1.46920 * 120.63103 * 354.96461 * 11 9 8 25 25 H 4.18736 * 15.03905 * 0.02562 * 4 2 1 26 26 H 1.09002 * 109.46614 * 305.00248 * 5 3 2 27 27 H 1.08996 * 109.46700 * 64.99929 * 5 3 2 28 28 H 1.09002 * 109.47441 * 299.99606 * 6 5 3 29 29 H 1.08996 * 109.47476 * 60.00268 * 6 5 3 30 30 H 1.09000 * 109.47411 * 299.99683 * 7 6 5 31 31 H 1.08999 * 109.47565 * 60.00263 * 7 6 5 32 32 H 1.09003 * 109.47173 * 179.97438 * 7 6 5 33 33 H 0.97000 * 119.99420 * 265.00205 * 8 3 2 34 34 H 1.09001 * 109.58755 * 353.42146 * 12 11 9 35 35 H 1.09005 * 109.58273 * 113.83974 * 12 11 9 36 36 H 1.08996 * 109.56401 * 185.55081 * 13 12 11 37 37 H 1.09006 * 109.38229 * 65.51760 * 13 12 11 38 38 H 1.09000 * 109.45633 * 301.21844 * 14 13 12 39 39 H 0.97000 * 120.00447 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.49605 * 178.68553 * 23 14 13 41 41 H 1.08994 * 109.52527 * 58.60850 * 23 14 13 42 42 H 1.09008 * 109.58542 * 246.15455 * 24 11 9 43 43 H 1.09001 * 109.58773 * 6.43383 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1048 -1.0222 5 6 3.1555 1.3176 0.5890 6 6 4.6802 1.3713 0.4750 7 6 5.1897 2.6880 1.0646 8 7 3.1349 -1.1181 0.8098 9 6 3.2641 -2.3418 0.2603 10 8 3.0638 -2.4987 -0.9286 11 7 3.6154 -3.3919 1.0288 12 6 3.6474 -4.7506 0.4705 13 6 2.7949 -5.6681 1.3451 14 6 3.2712 -5.5731 2.7963 15 6 2.4513 -6.5009 3.6554 16 1 1.8705 -6.1054 4.4756 17 6 2.4423 -7.8546 3.3942 18 7 3.1497 -8.3364 2.3957 19 14 1.4254 -9.0046 4.4586 20 1 0.0629 -9.1366 3.8830 21 1 2.0746 -10.3393 4.5055 22 1 1.3304 -8.4519 5.8336 23 6 3.1061 -4.1361 3.2961 24 6 3.9676 -3.2005 2.4423 25 1 -1.0499 0.0005 -0.0001 26 1 2.7204 2.1532 0.0407 27 1 2.8671 1.3820 1.6382 28 1 5.1153 0.5357 1.0233 29 1 4.9686 1.3069 -0.5742 30 1 4.7547 3.5239 0.5167 31 1 4.9014 2.7519 2.1138 32 1 6.2760 2.7261 0.9838 33 1 3.3655 -0.9779 1.7415 34 1 3.2469 -4.7387 -0.5432 35 1 4.6745 -5.1154 0.4555 36 1 2.8909 -6.6966 0.9972 37 1 1.7513 -5.3592 1.2837 38 1 4.3215 -5.8589 2.8531 39 1 3.1437 -9.2888 2.2121 40 1 3.4237 -4.0742 4.3371 41 1 2.0599 -3.8408 3.2169 42 1 5.0213 -3.4363 2.5915 43 1 3.7808 -2.1655 2.7285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491438205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:57 Heat of formation + Delta-G solvation = -7.284641 kcal Electronic energy + Delta-G solvation = -22000.532333 eV Core-core repulsion = 18853.005290 eV Total energy + Delta-G solvation = -3147.527044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50075 -38.92236 -37.62090 -35.41888 -34.51666 -33.65688 -32.72264 -31.69959 -29.69075 -27.89747 -25.28533 -24.65114 -23.82638 -22.06391 -21.88954 -20.46898 -19.55637 -18.88260 -18.33406 -17.49446 -16.57958 -16.49153 -16.08294 -15.65450 -15.33407 -15.19470 -14.94577 -14.63395 -14.54501 -14.13269 -13.91594 -13.44352 -13.39068 -13.01362 -12.84805 -12.78026 -12.52799 -12.47014 -12.16333 -11.99919 -11.90621 -11.62854 -11.51893 -11.42606 -11.23254 -11.07190 -10.94217 -10.80244 -10.44057 -10.38722 -9.44146 -8.07221 -6.21125 1.35049 1.41252 1.42995 1.51938 1.86025 2.10488 2.13091 2.44104 3.00602 3.19445 3.38524 3.92435 4.06150 4.06844 4.21195 4.24449 4.32318 4.47100 4.50684 4.59170 4.68099 4.71602 4.81952 4.89862 4.90971 4.97894 5.01185 5.13458 5.18249 5.23288 5.29533 5.30898 5.46132 5.48783 5.50381 5.51138 5.65782 5.97915 6.03799 6.11887 6.38722 6.65385 6.90306 6.97129 7.47003 7.53174 8.96242 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.003815 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.587655 B = 7338.449638 C = 7510.023811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.234 4.234 3 C 0.269 3.731 4 H 0.091 0.909 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.149 4.149 8 N -0.724 5.724 9 C 0.704 3.296 10 O -0.636 6.636 11 N -0.621 5.621 12 C 0.140 3.860 13 C -0.111 4.111 14 C 0.046 3.954 15 C -0.532 4.532 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.950 3.050 20 H -0.281 1.281 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.116 4.116 24 C 0.117 3.883 25 H 0.244 0.756 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.410 0.590 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.017 0.983 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 20.782 -0.408 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.235 4.235 3 C 0.164 3.836 4 H 0.108 0.892 5 C -0.145 4.145 6 C -0.161 4.161 7 C -0.206 4.206 8 N -0.382 5.382 9 C 0.406 3.594 10 O -0.518 6.518 11 N -0.356 5.356 12 C 0.017 3.983 13 C -0.150 4.150 14 C 0.028 3.972 15 C -0.571 4.571 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.776 3.224 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.154 4.154 24 C -0.005 4.005 25 H 0.260 0.740 26 H 0.112 0.888 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.847 20.504 -1.312 20.629 hybrid contribution -0.810 -1.326 0.660 1.688 sum 1.036 19.178 -0.652 19.217 Atomic orbital electron populations 1.25760 0.96915 0.98499 0.99303 1.24108 0.95805 1.01924 1.01674 1.17796 0.82580 0.86695 0.96498 0.89155 1.21821 0.96537 0.93555 1.02554 1.21521 0.94032 0.98993 1.01601 1.21740 1.01122 0.96470 1.01261 1.45200 1.70829 1.06789 1.15429 1.16029 0.77548 0.81321 0.84524 1.90837 1.60535 1.84784 1.15675 1.47397 1.70695 1.06059 1.11486 1.21328 0.99927 0.80100 0.96990 1.21712 0.96076 0.99260 0.97981 1.18594 0.95186 0.91687 0.91776 1.21588 1.28444 0.92621 1.14408 0.92937 1.25709 0.96579 0.99847 0.96449 1.69974 1.41893 1.13450 1.30166 0.85677 0.78713 0.78372 0.79608 1.20722 1.20999 1.19100 1.21864 0.98674 0.95715 0.99140 1.21828 0.99646 1.00162 0.78862 0.73992 0.88765 0.89780 0.92016 0.92246 0.92136 0.92041 0.92432 0.75076 0.91738 0.92033 0.90828 0.96363 0.97590 0.93065 0.90670 0.93848 0.90386 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.43 19.25 74.32 1.43 -3.00 16 2 C -0.23 -6.18 12.84 31.12 0.40 -5.78 16 3 C 0.27 6.39 2.46 43.18 0.11 6.49 16 4 H 0.09 2.48 7.51 -2.39 -0.02 2.46 16 5 C -0.11 -1.60 4.71 30.59 0.14 -1.46 16 6 C -0.12 -1.75 5.82 30.59 0.18 -1.57 16 7 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 8 N -0.72 -18.93 4.41 -466.57 -2.06 -20.99 16 9 C 0.70 25.27 8.24 179.05 1.48 26.75 16 10 O -0.64 -27.93 15.41 -3.99 -0.06 -27.99 16 11 N -0.62 -22.34 2.98 -837.75 -2.50 -24.84 16 12 C 0.14 5.84 6.39 86.22 0.55 6.39 16 13 C -0.11 -5.38 5.14 30.53 0.16 -5.22 16 14 C 0.05 2.21 2.07 -11.51 -0.02 2.19 16 15 C -0.53 -28.64 8.56 25.60 0.22 -28.42 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -52.20 11.31 21.45 0.24 -51.96 16 19 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C -0.12 -4.31 5.30 30.67 0.16 -4.15 16 24 C 0.12 3.48 6.43 86.36 0.56 4.03 16 25 H 0.24 3.86 7.80 -4.42 -0.03 3.82 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 0.94 7.75 -2.39 -0.02 0.92 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.41 8.36 6.06 -92.71 -0.56 7.79 16 34 H 0.06 2.83 7.04 -2.39 -0.02 2.81 16 35 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.07 4.01 6.03 -2.39 -0.01 3.99 16 37 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.07 2.57 8.14 -2.38 -0.02 2.56 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.10 2.15 5.56 -2.39 -0.01 2.13 16 Total: -1.00 -68.55 348.89 4.59 -63.96 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.42 Total: 20.01 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 6.52 Total: -3.50 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.31 Total: -97.79 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.06 Total: -27.99 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.55 4.59 -63.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491438205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.675 kcal (2) G-P(sol) polarization free energy of solvation -68.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds