Wall clock time and date at job start Tue Mar 31 2020 01:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47103 * 184.76742 * 3 2 1 5 5 C 1.34773 * 120.00036 * 270.27630 * 4 3 2 6 6 O 1.21586 * 120.00012 * 179.72577 * 5 4 3 7 7 N 1.34774 * 119.99940 * 359.72217 * 5 4 3 8 8 C 1.46498 * 120.00211 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47428 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47327 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99793 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00024 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00107 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47241 * 120.00108 * 14 12 10 17 17 H 1.48501 * 109.47173 * 240.00025 * 14 12 10 18 18 C 1.46506 * 119.99936 * 89.99595 * 4 3 2 19 19 C 1.52997 * 109.47021 * 239.99863 * 18 4 3 20 20 C 1.53006 * 109.46797 * 180.02562 * 19 18 4 21 21 C 1.52998 * 109.46818 * 60.00282 * 20 19 18 22 22 C 1.52992 * 109.47451 * 299.99701 * 21 20 19 23 23 C 1.52998 * 109.46656 * 120.00108 * 18 4 3 24 24 H 4.40645 * 5.51442 * 179.97438 * 4 1 2 25 25 H 1.08994 * 109.47574 * 64.76415 * 3 2 1 26 26 H 1.09005 * 109.46547 * 304.76324 * 3 2 1 27 27 H 0.97004 * 120.00041 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.47182 * 299.99924 * 8 7 5 29 29 H 1.09001 * 109.47115 * 59.99869 * 8 7 5 30 30 H 1.08998 * 109.47065 * 300.00226 * 9 8 7 31 31 H 1.09001 * 109.46892 * 59.99962 * 9 8 7 32 32 H 0.97000 * 120.00440 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47304 * 0.02562 * 18 4 3 34 34 H 1.08995 * 109.47505 * 300.00396 * 19 18 4 35 35 H 1.09001 * 109.47000 * 60.00883 * 19 18 4 36 36 H 1.08995 * 109.47367 * 299.99862 * 20 19 18 37 37 H 1.09006 * 109.46802 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47051 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47120 * 60.00095 * 21 20 19 40 40 H 1.09005 * 109.47280 * 300.00296 * 22 21 20 41 41 H 1.08996 * 109.47595 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47539 * 299.99969 * 23 18 4 43 43 H 1.09005 * 109.47120 * 60.00270 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3773 0.1148 5 6 3.3528 2.1094 -0.9954 6 8 3.7528 3.2536 -0.8999 7 7 3.1284 1.5732 -2.2113 8 6 3.3670 2.3687 -3.4181 9 6 3.0377 1.5305 -4.6550 10 6 3.2826 2.3491 -5.8964 11 1 3.6379 3.3655 -5.8116 12 6 3.0529 1.8006 -7.1403 13 7 2.6198 0.5631 -7.2435 14 14 3.3571 2.8150 -8.6790 15 1 3.8379 4.1662 -8.2941 16 1 4.3820 2.1450 -9.5191 17 1 2.0924 2.9405 -9.4472 18 6 3.3776 1.9602 1.4366 19 6 2.4925 3.1945 1.6208 20 6 2.7476 3.8036 3.0010 21 6 4.2185 4.2091 3.1154 22 6 5.1036 2.9749 2.9312 23 6 4.8484 2.3656 1.5516 24 1 -1.0502 -0.0003 -0.0002 25 1 3.0097 -0.4373 -0.9295 26 1 3.0096 -0.5852 0.8443 27 1 2.8097 0.6602 -2.2875 28 1 2.7329 3.2551 -3.4002 29 1 4.4136 2.6713 -3.4528 30 1 3.6721 0.6443 -4.6727 31 1 1.9913 1.2275 -4.6205 32 1 2.4579 0.1772 -8.1186 33 1 3.1422 1.2257 2.2067 34 1 2.7282 3.9289 0.8507 35 1 1.4446 2.9057 1.5389 36 1 2.5121 3.0694 3.7714 37 1 2.1173 4.6833 3.1320 38 1 4.4002 4.6435 4.0985 39 1 4.4539 4.9434 2.3450 40 1 4.8681 2.2406 3.7016 41 1 6.1514 3.2637 3.0132 42 1 5.4791 1.4863 1.4204 43 1 5.0842 3.1001 0.7815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491543950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:34 Heat of formation + Delta-G solvation = 4.901546 kcal Electronic energy + Delta-G solvation = -21944.800838 eV Core-core repulsion = 18797.802227 eV Total energy + Delta-G solvation = -3146.998611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39336 -37.87289 -35.68945 -34.80721 -32.80304 -32.66488 -30.74798 -30.22139 -28.94183 -26.68175 -24.70344 -22.69030 -22.59347 -20.95256 -20.26428 -19.55761 -18.46748 -17.29701 -16.56193 -16.15309 -15.37107 -15.01903 -14.50357 -14.34275 -14.26138 -14.12805 -13.96827 -13.49993 -13.30526 -13.08931 -12.63098 -12.44021 -12.26341 -12.18431 -11.39207 -11.15081 -11.10348 -11.00599 -10.86489 -10.60567 -10.58909 -10.39690 -10.37087 -10.18343 -10.13598 -9.66109 -9.42348 -9.17620 -8.74469 -8.45839 -8.19554 -6.07512 -4.09959 2.40551 2.78103 3.27201 3.29654 3.37342 3.42949 3.55683 4.22877 4.36008 4.46136 4.72644 4.76662 4.88492 5.05504 5.12577 5.24185 5.29682 5.33264 5.36903 5.51054 5.53806 5.56661 5.72347 5.86656 5.96068 5.96977 6.06739 6.19295 6.27925 6.28474 6.41956 6.44439 6.46070 6.79490 6.79993 7.05478 7.17765 7.55819 7.58369 7.65650 7.91848 8.27013 8.40049 8.94917 9.01997 9.54751 11.04233 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.003773 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.691144 B = 7419.534661 C = 8157.364733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.212 4.212 3 C 0.220 3.780 4 N -0.629 5.629 5 C 0.705 3.295 6 O -0.585 6.585 7 N -0.738 5.738 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.175 3.825 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.138 4.138 24 H 0.216 0.784 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.392 0.608 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -1.186 21.406 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.214 4.214 3 C 0.096 3.904 4 N -0.366 5.366 5 C 0.406 3.594 6 O -0.464 6.464 7 N -0.393 5.393 8 C 0.017 3.983 9 C -0.025 4.025 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C 0.072 3.928 19 C -0.176 4.176 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.176 4.176 24 H 0.233 0.767 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.226 0.774 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.193 -0.451 21.294 21.300 hybrid contribution -0.425 -0.175 -0.995 1.096 sum -0.232 -0.626 20.299 20.310 Atomic orbital electron populations 1.24964 0.95962 0.98567 1.00498 1.23694 0.95103 1.01626 1.00943 1.18344 0.83669 0.84355 1.03999 1.47347 1.70416 1.13099 1.05723 1.15976 0.78626 0.84408 0.80361 1.90819 1.53220 1.16761 1.85589 1.45733 1.70786 1.17658 1.05103 1.21580 1.00063 0.94371 0.82283 1.19323 0.97364 0.95428 0.90353 1.21091 1.44792 0.99442 0.90439 0.92173 1.24994 0.95024 0.95025 0.99273 1.69968 1.45735 1.13573 1.24083 0.86463 0.77863 0.80440 0.82845 1.19564 1.20948 1.20969 1.20832 0.95153 0.94829 0.82003 1.22005 0.98803 0.98568 0.98229 1.21467 0.96495 1.00245 0.96846 1.21548 0.94957 0.97989 1.01331 1.21453 0.99508 0.97289 0.96794 1.22009 0.95347 1.01874 0.98396 0.76703 0.88278 0.88069 0.77382 0.92853 0.92747 0.96035 0.96061 0.92943 0.90291 0.89070 0.92531 0.92478 0.92061 0.92396 0.91571 0.92440 0.91966 0.92298 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.21 -2.61 13.67 -37.12 -0.51 -3.12 16 3 C 0.22 2.43 5.62 -6.83 -0.04 2.40 16 4 N -0.63 -8.63 2.38 -175.14 -0.42 -9.05 16 5 C 0.70 12.55 7.69 -86.92 -0.67 11.88 16 6 O -0.59 -12.09 12.55 5.29 0.07 -12.02 16 7 N -0.74 -13.63 5.42 -65.23 -0.35 -13.98 16 8 C 0.14 3.07 5.61 -4.04 -0.02 3.04 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 14 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.18 2.12 2.55 -67.93 -0.17 1.94 16 19 C -0.14 -1.76 5.13 -26.73 -0.14 -1.90 16 20 C -0.11 -1.13 5.92 -26.73 -0.16 -1.29 16 21 C -0.12 -1.19 5.92 -26.74 -0.16 -1.35 16 22 C -0.11 -1.08 5.92 -26.76 -0.16 -1.24 16 23 C -0.14 -1.66 5.13 -26.76 -0.14 -1.80 16 24 H 0.22 1.79 7.80 -54.08 -0.42 1.37 16 25 H 0.10 1.06 6.37 -51.93 -0.33 0.73 16 26 H 0.10 0.82 7.92 -51.93 -0.41 0.41 16 27 H 0.39 6.52 6.20 -40.82 -0.25 6.26 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 34 H 0.09 1.47 6.14 -51.93 -0.32 1.15 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.41 6.18 -51.93 -0.32 1.09 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -31.83 348.74 -8.95 -40.78 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.08 Total: 4.16 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.14 Total: -6.08 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.03 Total: -48.61 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.83 -8.95 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491543950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.685 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds