Wall clock time and date at job start Tue Mar 31 2020 01:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47103 * 184.76742 * 3 2 1 5 5 C 1.34773 * 120.00036 * 270.27630 * 4 3 2 6 6 O 1.21586 * 120.00012 * 179.72577 * 5 4 3 7 7 N 1.34774 * 119.99940 * 359.72217 * 5 4 3 8 8 C 1.46498 * 120.00211 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.47428 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47327 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99793 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00024 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00107 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00009 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47241 * 120.00108 * 14 12 10 17 17 H 1.48501 * 109.47173 * 240.00025 * 14 12 10 18 18 C 1.46506 * 119.99936 * 89.99595 * 4 3 2 19 19 C 1.52997 * 109.47021 * 239.99863 * 18 4 3 20 20 C 1.53006 * 109.46797 * 180.02562 * 19 18 4 21 21 C 1.52998 * 109.46818 * 60.00282 * 20 19 18 22 22 C 1.52992 * 109.47451 * 299.99701 * 21 20 19 23 23 C 1.52998 * 109.46656 * 120.00108 * 18 4 3 24 24 H 4.40645 * 5.51442 * 179.97438 * 4 1 2 25 25 H 1.08994 * 109.47574 * 64.76415 * 3 2 1 26 26 H 1.09005 * 109.46547 * 304.76324 * 3 2 1 27 27 H 0.97004 * 120.00041 * 359.97438 * 7 5 4 28 28 H 1.08998 * 109.47182 * 299.99924 * 8 7 5 29 29 H 1.09001 * 109.47115 * 59.99869 * 8 7 5 30 30 H 1.08998 * 109.47065 * 300.00226 * 9 8 7 31 31 H 1.09001 * 109.46892 * 59.99962 * 9 8 7 32 32 H 0.97000 * 120.00440 * 179.97438 * 13 12 10 33 33 H 1.08995 * 109.47304 * 0.02562 * 18 4 3 34 34 H 1.08995 * 109.47505 * 300.00396 * 19 18 4 35 35 H 1.09001 * 109.47000 * 60.00883 * 19 18 4 36 36 H 1.08995 * 109.47367 * 299.99862 * 20 19 18 37 37 H 1.09006 * 109.46802 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47051 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.47120 * 60.00095 * 21 20 19 40 40 H 1.09005 * 109.47280 * 300.00296 * 22 21 20 41 41 H 1.08996 * 109.47595 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47539 * 299.99969 * 23 18 4 43 43 H 1.09005 * 109.47120 * 60.00270 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3773 0.1148 5 6 3.3528 2.1094 -0.9954 6 8 3.7528 3.2536 -0.8999 7 7 3.1284 1.5732 -2.2113 8 6 3.3670 2.3687 -3.4181 9 6 3.0377 1.5305 -4.6550 10 6 3.2826 2.3491 -5.8964 11 1 3.6379 3.3655 -5.8116 12 6 3.0529 1.8006 -7.1403 13 7 2.6198 0.5631 -7.2435 14 14 3.3571 2.8150 -8.6790 15 1 3.8379 4.1662 -8.2941 16 1 4.3820 2.1450 -9.5191 17 1 2.0924 2.9405 -9.4472 18 6 3.3776 1.9602 1.4366 19 6 2.4925 3.1945 1.6208 20 6 2.7476 3.8036 3.0010 21 6 4.2185 4.2091 3.1154 22 6 5.1036 2.9749 2.9312 23 6 4.8484 2.3656 1.5516 24 1 -1.0502 -0.0003 -0.0002 25 1 3.0097 -0.4373 -0.9295 26 1 3.0096 -0.5852 0.8443 27 1 2.8097 0.6602 -2.2875 28 1 2.7329 3.2551 -3.4002 29 1 4.4136 2.6713 -3.4528 30 1 3.6721 0.6443 -4.6727 31 1 1.9913 1.2275 -4.6205 32 1 2.4579 0.1772 -8.1186 33 1 3.1422 1.2257 2.2067 34 1 2.7282 3.9289 0.8507 35 1 1.4446 2.9057 1.5389 36 1 2.5121 3.0694 3.7714 37 1 2.1173 4.6833 3.1320 38 1 4.4002 4.6435 4.0985 39 1 4.4539 4.9434 2.3450 40 1 4.8681 2.2406 3.7016 41 1 6.1514 3.2637 3.0132 42 1 5.4791 1.4863 1.4204 43 1 5.0842 3.1001 0.7815 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491543950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:33 Heat of formation + Delta-G solvation = -13.229732 kcal Electronic energy + Delta-G solvation = -21945.587069 eV Core-core repulsion = 18797.802227 eV Total energy + Delta-G solvation = -3147.784842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.64221 -38.98513 -36.80345 -36.53659 -34.76750 -33.64098 -31.77869 -31.63491 -30.27482 -27.80742 -26.55367 -23.95281 -23.48202 -22.71402 -21.33329 -20.81065 -19.48380 -18.52091 -18.38245 -17.52485 -16.69145 -16.50845 -16.07197 -15.56374 -15.52820 -15.15261 -15.07499 -14.67359 -14.51284 -14.41917 -14.27105 -13.58533 -13.44809 -13.18433 -13.07358 -12.94869 -12.51955 -12.38778 -12.28560 -11.94577 -11.77443 -11.62995 -11.52787 -11.39808 -11.27256 -11.16674 -11.02545 -10.70843 -10.61368 -10.12701 -9.59736 -8.24672 -6.35176 1.34497 1.40745 1.41912 1.55174 1.87821 2.11112 2.17732 2.41398 3.03994 3.10019 3.49605 3.78826 3.88990 4.02270 4.20990 4.26045 4.36071 4.43146 4.45564 4.50036 4.52718 4.63702 4.67575 4.68409 4.84508 4.94447 5.03945 5.06699 5.13479 5.23907 5.27229 5.34950 5.39146 5.43280 5.47510 5.55369 5.57181 5.78310 5.78836 5.92222 6.16258 6.66617 6.77841 6.98815 7.34238 7.59396 8.87593 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.003773 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.691144 B = 7419.534661 C = 8157.364733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.240 4.240 3 C 0.214 3.786 4 N -0.620 5.620 5 C 0.701 3.299 6 O -0.618 6.618 7 N -0.737 5.737 8 C 0.162 3.838 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.058 0.942 12 C 0.008 3.992 13 N -0.926 5.926 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.171 3.829 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.135 4.135 24 H 0.240 0.760 25 H 0.100 0.900 26 H 0.140 0.860 27 H 0.401 0.599 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.009 0.991 31 H 0.004 0.996 32 H 0.266 0.734 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -1.854 23.035 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.242 4.242 3 C 0.092 3.908 4 N -0.355 5.355 5 C 0.403 3.597 6 O -0.499 6.499 7 N -0.393 5.393 8 C 0.038 3.962 9 C -0.012 4.012 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.202 1.202 18 C 0.068 3.932 19 C -0.173 4.173 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.173 4.173 24 H 0.257 0.743 25 H 0.118 0.882 26 H 0.158 0.842 27 H 0.237 0.763 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.123 -1.152 22.969 22.998 hybrid contribution -0.451 0.006 -1.456 1.524 sum -0.328 -1.146 21.513 21.546 Atomic orbital electron populations 1.25733 0.96956 0.97496 0.99800 1.24049 0.95820 1.02572 1.01723 1.18659 0.83366 0.82945 1.05822 1.47382 1.69244 1.13859 1.05016 1.16125 0.78407 0.84255 0.80942 1.90813 1.54511 1.18402 1.86177 1.45466 1.71395 1.17824 1.04605 1.21041 0.98996 0.93576 0.82625 1.19109 0.95834 0.95019 0.91235 1.21475 1.45233 0.99798 0.91877 0.92341 1.25871 0.94504 0.96172 1.02566 1.70067 1.46289 1.15058 1.25190 0.85381 0.78044 0.78912 0.78620 1.19004 1.20069 1.20203 1.21099 0.95026 0.95343 0.81704 1.21922 0.98465 0.98083 0.98816 1.21449 0.96680 1.00808 0.95533 1.21552 0.94890 0.97741 1.01645 1.21443 0.99800 0.97523 0.95721 1.21940 0.95429 1.01133 0.98812 0.74343 0.88186 0.84235 0.76280 0.94252 0.93663 0.97305 0.97760 0.92521 0.86747 0.93231 0.93196 0.89990 0.91913 0.90168 0.94153 0.89824 0.91470 0.91559 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.24 -5.55 13.67 31.12 0.43 -5.13 16 3 C 0.21 4.37 5.62 84.57 0.47 4.84 16 4 N -0.62 -16.55 2.38 -826.27 -1.97 -18.52 16 5 C 0.70 25.55 7.69 179.06 1.38 26.92 16 6 O -0.62 -26.75 12.55 -3.99 -0.05 -26.80 16 7 N -0.74 -27.92 5.42 -478.54 -2.60 -30.51 16 8 C 0.16 7.37 5.61 86.38 0.48 7.86 16 9 C 0.03 1.33 5.09 29.85 0.15 1.48 16 10 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -54.89 13.29 21.45 0.28 -54.60 16 14 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 C 0.17 3.86 2.55 44.99 0.11 3.97 16 19 C -0.13 -3.39 5.13 30.60 0.16 -3.23 16 20 C -0.11 -1.96 5.92 30.60 0.18 -1.78 16 21 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 22 C -0.11 -1.82 5.92 30.58 0.18 -1.64 16 23 C -0.13 -3.12 5.13 30.58 0.16 -2.96 16 24 H 0.24 3.49 7.80 -4.41 -0.03 3.46 16 25 H 0.10 2.02 6.37 -2.39 -0.02 2.01 16 26 H 0.14 1.77 7.92 -2.38 -0.02 1.75 16 27 H 0.40 13.55 6.20 -92.71 -0.58 12.98 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.11 1.84 7.79 -2.39 -0.02 1.82 16 34 H 0.05 1.68 6.14 -2.39 -0.01 1.66 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.60 6.18 -2.38 -0.01 1.59 16 Total: -1.00 -70.55 348.74 4.11 -66.44 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.40 Total: 21.95 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 6.01 Total: -4.16 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -4.28 Total: -103.64 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -70.55 4.11 -66.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491543950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.212 kcal (2) G-P(sol) polarization free energy of solvation -70.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds