Wall clock time and date at job start Tue Mar 31 2020 00:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47546 * 22.42874 * 3 2 1 5 5 C 1.37099 * 119.99476 * 263.66886 * 4 3 2 6 6 H 1.08003 * 119.99344 * 194.13236 * 5 4 3 7 7 C 1.38943 * 120.00297 * 14.13864 * 5 4 3 8 8 N 1.31411 * 120.00472 * 11.64206 * 7 5 4 9 9 Si 1.86806 * 119.99913 * 191.64004 * 7 5 4 10 10 H 1.48496 * 109.47142 * 90.00050 * 9 7 5 11 11 H 1.48498 * 109.47213 * 210.00365 * 9 7 5 12 12 H 1.48502 * 109.47175 * 330.00098 * 9 7 5 13 13 C 1.34773 * 119.99773 * 83.66371 * 4 3 2 14 14 O 1.21284 * 120.00132 * 3.79591 * 13 4 3 15 15 C 1.50702 * 119.99748 * 183.79723 * 13 4 3 16 16 C 1.53114 * 109.52562 * 187.44474 * 15 13 4 17 17 C 1.53032 * 109.28114 * 182.37597 * 16 15 13 18 18 N 1.46847 * 109.52219 * 59.17993 * 17 16 15 19 19 C 1.46905 * 110.99924 * 174.16162 * 18 17 16 20 20 C 1.53002 * 109.46970 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47265 * 59.99802 * 19 18 17 22 22 C 1.46844 * 111.19910 * 298.25587 * 18 17 16 23 23 C 1.53043 * 109.52395 * 61.74152 * 22 18 17 24 24 H 4.40646 * 5.51373 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47148 * 262.42973 * 3 2 1 26 26 H 1.09004 * 109.47151 * 142.42674 * 3 2 1 27 27 H 0.97002 * 120.00437 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.52349 * 307.57359 * 15 13 4 29 29 H 1.09007 * 109.50334 * 62.42898 * 16 15 13 30 30 H 1.09007 * 109.53335 * 302.33967 * 16 15 13 31 31 H 1.08999 * 109.46584 * 299.16450 * 17 16 15 32 32 H 1.09001 * 109.45176 * 179.18844 * 17 16 15 33 33 H 1.09001 * 109.46840 * 299.99619 * 19 18 17 34 34 H 1.08991 * 109.47301 * 299.99737 * 20 19 18 35 35 H 1.09001 * 109.46816 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.46911 * 60.00180 * 20 19 18 37 37 H 1.08998 * 109.47230 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.46725 * 300.00244 * 21 19 18 39 39 H 1.09002 * 109.46963 * 59.99744 * 21 19 18 40 40 H 1.08997 * 109.46720 * 181.76047 * 22 18 17 41 41 H 1.09005 * 109.46308 * 301.73188 * 22 18 17 42 42 H 1.08999 * 109.50362 * 180.87953 * 23 22 18 43 43 H 1.08995 * 109.49847 * 60.76200 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2759 -0.5270 5 6 3.4873 -2.2829 0.3340 6 1 4.0551 -3.1278 -0.0269 7 6 3.1140 -2.2166 1.6707 8 7 2.2383 -1.3195 2.0647 9 14 3.8568 -3.4029 2.9078 10 1 5.0924 -2.8111 3.4809 11 1 2.8797 -3.6591 3.9963 12 1 4.1889 -4.6817 2.2298 13 6 3.2382 -1.4601 -1.8581 14 8 2.9923 -0.5471 -2.6176 15 6 3.6593 -2.8007 -2.4027 16 6 3.8771 -2.6934 -3.9145 17 6 4.2467 -4.0703 -4.4707 18 7 3.1674 -5.0228 -4.1801 19 6 3.4243 -6.3205 -4.8189 20 6 2.2814 -7.2843 -4.4934 21 6 4.7412 -6.8958 -4.2935 22 6 2.9718 -5.1782 -2.7330 23 6 2.5643 -3.8343 -2.1248 24 1 -1.0498 -0.0004 0.0000 25 1 3.0092 0.1362 1.0187 26 1 3.0089 0.8153 -0.6267 27 1 1.9779 -1.2730 2.9979 28 1 4.5863 -3.1142 -1.9224 29 1 4.6852 -1.9903 -4.1167 30 1 2.9616 -2.3422 -4.3906 31 1 5.1700 -4.4145 -4.0048 32 1 4.3883 -4.0000 -5.5492 33 1 3.4912 -6.1870 -5.8986 34 1 2.2150 -7.4177 -3.4138 35 1 2.4719 -8.2470 -4.9678 36 1 1.3432 -6.8746 -4.8674 37 1 4.9315 -7.8589 -4.7672 38 1 5.5556 -6.2092 -4.5250 39 1 4.6742 -7.0292 -3.2138 40 1 2.1878 -5.9127 -2.5493 41 1 3.9012 -5.5171 -2.2752 42 1 2.4344 -3.9464 -1.0484 43 1 1.6278 -3.5015 -2.5722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491637279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:30 Heat of formation + Delta-G solvation = 29.677736 kcal Electronic energy + Delta-G solvation = -22853.761411 eV Core-core repulsion = 19707.837176 eV Total energy + Delta-G solvation = -3145.924235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.65950 -38.26368 -35.27475 -34.39128 -31.90662 -31.44018 -30.50522 -29.97583 -27.24203 -26.64880 -25.08195 -23.73735 -22.64823 -20.68498 -19.28580 -18.79691 -17.68984 -16.66168 -16.08233 -15.83775 -14.88313 -14.46280 -14.37235 -14.35270 -13.95589 -13.84108 -13.33897 -13.24647 -12.89401 -12.47310 -12.15203 -11.97492 -11.92139 -11.66886 -11.51728 -11.38415 -11.25146 -11.08880 -10.94425 -10.74236 -10.58205 -10.44689 -10.29249 -9.95304 -9.81205 -9.40192 -9.29651 -8.67368 -8.29332 -8.02451 -7.90145 -6.34192 -3.95807 3.07076 3.16769 3.18783 3.74168 3.97074 4.08786 4.12871 4.29744 4.87328 4.92510 5.00454 5.08729 5.18880 5.33898 5.36142 5.55403 5.59547 5.64718 5.68190 5.73899 5.78810 5.84589 5.91051 5.96515 6.02654 6.12323 6.17867 6.25979 6.27373 6.45406 6.51488 6.65260 6.80777 6.91594 6.98450 7.11708 7.25547 7.34843 7.37343 7.39669 7.68846 8.34279 8.97841 9.03483 9.47156 9.87608 10.61950 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005982 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.649324 B = 4679.255252 C = 5544.146211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.094 4.094 3 C 0.230 3.770 4 N -0.442 5.442 5 C -0.329 4.329 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.864 5.864 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.466 3.534 14 O -0.603 6.603 15 C -0.084 4.084 16 C -0.094 4.094 17 C 0.057 3.943 18 N -0.531 5.531 19 C 0.075 3.925 20 C -0.147 4.147 21 C -0.188 4.188 22 C 0.053 3.947 23 C -0.105 4.105 24 H 0.197 0.803 25 H 0.129 0.871 26 H 0.059 0.941 27 H 0.269 0.731 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.091 0.909 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.161 -9.136 -6.926 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.096 4.096 3 C 0.108 3.892 4 N -0.159 5.159 5 C -0.456 4.456 6 H 0.119 0.881 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.254 3.746 14 O -0.489 6.489 15 C -0.106 4.106 16 C -0.132 4.132 17 C -0.070 4.070 18 N -0.256 5.256 19 C -0.033 4.033 20 C -0.205 4.205 21 C -0.247 4.247 22 C -0.074 4.074 23 C -0.143 4.143 24 H 0.214 0.786 25 H 0.146 0.854 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.538 -8.437 -7.270 11.423 hybrid contribution 0.798 -1.052 1.262 1.826 sum 3.336 -9.489 -6.009 11.716 Atomic orbital electron populations 1.24226 0.95383 1.03752 1.06983 1.23362 0.94490 0.96912 0.94796 1.18426 0.83893 0.85595 1.01310 1.43714 1.55616 1.12539 1.04050 1.19683 1.33520 1.02453 0.89952 0.88058 1.25270 0.95581 0.97980 0.98341 1.70038 1.28597 1.34300 1.17357 0.86006 0.78709 0.80224 0.80222 1.20318 1.20916 1.19506 1.20158 0.82547 0.89537 0.82311 1.90526 1.56530 1.44207 1.57610 1.20994 0.99573 0.94470 0.95550 1.21375 1.02625 0.94582 0.94638 1.22119 0.91983 0.92962 0.99978 1.62215 1.43431 1.08489 1.11438 1.21682 0.93598 0.89084 0.98945 1.21910 0.98639 0.98009 1.01910 1.22498 0.99005 1.01183 1.01981 1.22210 0.99903 0.98414 0.86869 1.21544 0.98044 0.92455 1.02254 0.78560 0.85422 0.92282 0.91984 0.90404 0.91730 0.90670 0.94942 0.91298 0.90354 0.92290 0.92648 0.91845 0.92505 0.92432 0.92307 0.90627 0.94882 0.89042 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.59 19.25 29.55 0.57 -6.02 16 2 C -0.09 -2.37 11.95 -37.13 -0.44 -2.82 16 3 C 0.23 5.72 5.09 -6.83 -0.03 5.68 16 4 N -0.44 -10.99 2.61 -117.93 -0.31 -11.30 16 5 C -0.33 -7.94 7.77 -14.94 -0.12 -8.06 16 6 H 0.10 2.31 5.74 -52.48 -0.30 2.01 16 7 C 0.03 0.78 5.16 -17.47 -0.09 0.69 16 8 N -0.86 -21.91 8.93 55.50 0.50 -21.42 16 9 Si 0.92 18.89 29.57 -169.99 -5.03 13.86 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 C 0.47 11.24 6.88 -10.99 -0.08 11.16 16 14 O -0.60 -16.06 15.60 5.55 0.09 -15.98 16 15 C -0.08 -1.66 1.75 -91.65 -0.16 -1.82 16 16 C -0.09 -1.65 4.74 -26.66 -0.13 -1.78 16 17 C 0.06 0.82 4.89 -3.84 -0.02 0.80 16 18 N -0.53 -7.58 4.68 -226.68 -1.06 -8.64 16 19 C 0.08 0.87 3.03 -67.71 -0.20 0.67 16 20 C -0.15 -1.54 8.84 37.16 0.33 -1.22 16 21 C -0.19 -2.00 8.50 37.16 0.32 -1.68 16 22 C 0.05 0.81 4.67 -3.83 -0.02 0.79 16 23 C -0.10 -1.95 5.10 -26.65 -0.14 -2.09 16 24 H 0.20 3.72 7.80 -54.10 -0.42 3.30 16 25 H 0.13 3.22 5.79 -51.93 -0.30 2.92 16 26 H 0.06 1.44 7.57 -51.93 -0.39 1.04 16 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 29 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.07 1.47 7.95 -51.92 -0.41 1.05 16 31 H 0.03 0.45 6.63 -51.93 -0.34 0.11 16 32 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.64 6.22 -51.93 -0.32 0.32 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 39 H 0.06 0.67 6.63 -51.93 -0.34 0.32 16 40 H 0.08 1.07 5.90 -51.93 -0.31 0.76 16 41 H 0.03 0.49 6.71 -51.93 -0.35 0.15 16 42 H 0.09 1.86 6.16 -51.93 -0.32 1.54 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -28.24 332.40 -7.63 -35.88 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.62 Total: 8.27 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.21 Total: -5.69 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.87 Total: -41.36 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.09 Total: -15.98 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.24 -7.63 -35.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491637279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.555 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds