Wall clock time and date at job start Tue Mar 31 2020 00:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47546 * 22.42874 * 3 2 1 5 5 C 1.37099 * 119.99476 * 263.66886 * 4 3 2 6 6 H 1.08003 * 119.99344 * 194.13236 * 5 4 3 7 7 C 1.38943 * 120.00297 * 14.13864 * 5 4 3 8 8 N 1.31411 * 120.00472 * 11.64206 * 7 5 4 9 9 Si 1.86806 * 119.99913 * 191.64004 * 7 5 4 10 10 H 1.48496 * 109.47142 * 90.00050 * 9 7 5 11 11 H 1.48498 * 109.47213 * 210.00365 * 9 7 5 12 12 H 1.48502 * 109.47175 * 330.00098 * 9 7 5 13 13 C 1.34773 * 119.99773 * 83.66371 * 4 3 2 14 14 O 1.21284 * 120.00132 * 3.79591 * 13 4 3 15 15 C 1.50702 * 119.99748 * 183.79723 * 13 4 3 16 16 C 1.53114 * 109.52562 * 187.44474 * 15 13 4 17 17 C 1.53032 * 109.28114 * 182.37597 * 16 15 13 18 18 N 1.46847 * 109.52219 * 59.17993 * 17 16 15 19 19 C 1.46905 * 110.99924 * 174.16162 * 18 17 16 20 20 C 1.53002 * 109.46970 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47265 * 59.99802 * 19 18 17 22 22 C 1.46844 * 111.19910 * 298.25587 * 18 17 16 23 23 C 1.53043 * 109.52395 * 61.74152 * 22 18 17 24 24 H 4.40646 * 5.51373 * 179.97438 * 4 1 2 25 25 H 1.09005 * 109.47148 * 262.42973 * 3 2 1 26 26 H 1.09004 * 109.47151 * 142.42674 * 3 2 1 27 27 H 0.97002 * 120.00437 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.52349 * 307.57359 * 15 13 4 29 29 H 1.09007 * 109.50334 * 62.42898 * 16 15 13 30 30 H 1.09007 * 109.53335 * 302.33967 * 16 15 13 31 31 H 1.08999 * 109.46584 * 299.16450 * 17 16 15 32 32 H 1.09001 * 109.45176 * 179.18844 * 17 16 15 33 33 H 1.09001 * 109.46840 * 299.99619 * 19 18 17 34 34 H 1.08991 * 109.47301 * 299.99737 * 20 19 18 35 35 H 1.09001 * 109.46816 * 179.97438 * 20 19 18 36 36 H 1.08994 * 109.46911 * 60.00180 * 20 19 18 37 37 H 1.08998 * 109.47230 * 179.97438 * 21 19 18 38 38 H 1.09004 * 109.46725 * 300.00244 * 21 19 18 39 39 H 1.09002 * 109.46963 * 59.99744 * 21 19 18 40 40 H 1.08997 * 109.46720 * 181.76047 * 22 18 17 41 41 H 1.09005 * 109.46308 * 301.73188 * 22 18 17 42 42 H 1.08999 * 109.50362 * 180.87953 * 23 22 18 43 43 H 1.08995 * 109.49847 * 60.76200 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2759 -0.5270 5 6 3.4873 -2.2829 0.3340 6 1 4.0551 -3.1278 -0.0269 7 6 3.1140 -2.2166 1.6707 8 7 2.2383 -1.3195 2.0647 9 14 3.8568 -3.4029 2.9078 10 1 5.0924 -2.8111 3.4809 11 1 2.8797 -3.6591 3.9963 12 1 4.1889 -4.6817 2.2298 13 6 3.2382 -1.4601 -1.8581 14 8 2.9923 -0.5471 -2.6176 15 6 3.6593 -2.8007 -2.4027 16 6 3.8771 -2.6934 -3.9145 17 6 4.2467 -4.0703 -4.4707 18 7 3.1674 -5.0228 -4.1801 19 6 3.4243 -6.3205 -4.8189 20 6 2.2814 -7.2843 -4.4934 21 6 4.7412 -6.8958 -4.2935 22 6 2.9718 -5.1782 -2.7330 23 6 2.5643 -3.8343 -2.1248 24 1 -1.0498 -0.0004 0.0000 25 1 3.0092 0.1362 1.0187 26 1 3.0089 0.8153 -0.6267 27 1 1.9779 -1.2730 2.9979 28 1 4.5863 -3.1142 -1.9224 29 1 4.6852 -1.9903 -4.1167 30 1 2.9616 -2.3422 -4.3906 31 1 5.1700 -4.4145 -4.0048 32 1 4.3883 -4.0000 -5.5492 33 1 3.4912 -6.1870 -5.8986 34 1 2.2150 -7.4177 -3.4138 35 1 2.4719 -8.2470 -4.9678 36 1 1.3432 -6.8746 -4.8674 37 1 4.9315 -7.8589 -4.7672 38 1 5.5556 -6.2092 -4.5250 39 1 4.6742 -7.0292 -3.2138 40 1 2.1878 -5.9127 -2.5493 41 1 3.9012 -5.5171 -2.2752 42 1 2.4344 -3.9464 -1.0484 43 1 1.6278 -3.5015 -2.5722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491637279.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:29 Heat of formation + Delta-G solvation = 13.607169 kcal Electronic energy + Delta-G solvation = -22854.458283 eV Core-core repulsion = 19707.837176 eV Total energy + Delta-G solvation = -3146.621107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19052 -39.75656 -37.11233 -35.78807 -33.78272 -33.25860 -31.87881 -31.21351 -28.50663 -28.03858 -26.83681 -25.23619 -23.97129 -21.99949 -20.89723 -20.18126 -19.47324 -18.42461 -17.93553 -17.00038 -16.23183 -16.14691 -16.04228 -15.80064 -15.34388 -15.02187 -14.86680 -14.63205 -14.28675 -13.93323 -13.77229 -13.48933 -13.26000 -13.11314 -12.79743 -12.75259 -12.64851 -12.46381 -12.30119 -12.10753 -12.00027 -11.83534 -11.59935 -11.44507 -11.27361 -11.24183 -11.08122 -10.60562 -10.17587 -9.83665 -9.10939 -8.20371 -5.88422 1.43142 1.49383 1.59441 1.87756 2.12480 2.33691 2.38337 3.00538 3.14177 3.18324 3.86031 3.90793 3.94332 4.09100 4.11919 4.27614 4.37856 4.42044 4.48095 4.49060 4.62112 4.71676 4.75538 4.80194 4.87789 4.93710 4.96657 5.01830 5.08651 5.11528 5.15847 5.26023 5.35147 5.39111 5.40595 5.43176 5.47797 5.52253 5.79674 6.23756 6.32580 6.43338 7.07490 7.13490 7.57119 7.97650 8.75949 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.005982 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.649324 B = 4679.255252 C = 5544.146211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.144 4.144 3 C 0.231 3.769 4 N -0.449 5.449 5 C -0.341 4.341 6 H 0.114 0.886 7 C -0.008 4.008 8 N -0.890 5.890 9 Si 0.989 3.011 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.256 1.256 13 C 0.450 3.550 14 O -0.637 6.637 15 C -0.077 4.077 16 C -0.088 4.088 17 C 0.066 3.934 18 N -0.545 5.545 19 C 0.074 3.926 20 C -0.145 4.145 21 C -0.183 4.183 22 C 0.064 3.936 23 C -0.095 4.095 24 H 0.236 0.764 25 H 0.120 0.880 26 H 0.051 0.949 27 H 0.268 0.732 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.778 -11.758 -7.292 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.166 5.166 5 C -0.468 4.468 6 H 0.132 0.868 7 C -0.209 4.209 8 N -0.529 5.529 9 Si 0.813 3.187 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.180 1.180 13 C 0.240 3.760 14 O -0.526 6.526 15 C -0.098 4.098 16 C -0.126 4.126 17 C -0.062 4.062 18 N -0.270 5.270 19 C -0.033 4.033 20 C -0.202 4.202 21 C -0.242 4.242 22 C -0.063 4.063 23 C -0.133 4.133 24 H 0.253 0.747 25 H 0.137 0.863 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.163 -11.073 -7.644 13.822 hybrid contribution 0.525 -0.165 1.365 1.472 sum 3.688 -11.238 -6.279 13.391 Atomic orbital electron populations 1.25178 0.96424 1.01791 1.04965 1.23713 0.95309 0.98819 0.96691 1.18304 0.84430 0.85821 1.00573 1.43958 1.55349 1.12652 1.04647 1.20025 1.33884 1.02684 0.90227 0.86832 1.26102 0.95607 0.99480 0.99743 1.70173 1.29513 1.35668 1.17499 0.84975 0.77564 0.78667 0.77511 1.20022 1.21460 1.18012 1.21002 0.82148 0.90881 0.81935 1.90484 1.58116 1.45718 1.58280 1.20996 0.99971 0.92068 0.96812 1.21305 1.01353 0.96962 0.92970 1.22033 0.92309 0.90827 1.00991 1.62169 1.43832 1.10208 1.10768 1.21790 0.94593 0.87739 0.99218 1.21897 0.97851 0.98707 1.01773 1.22446 0.98136 1.02053 1.01555 1.22062 1.00627 0.96093 0.87565 1.21405 0.96630 0.94196 1.01114 0.74705 0.86267 0.93061 0.92154 0.89581 0.91976 0.93178 0.93760 0.89350 0.89379 0.92726 0.90554 0.92674 0.90677 0.92562 0.93047 0.89414 0.94025 0.90935 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.21 19.25 74.32 1.43 -10.78 16 2 C -0.14 -7.42 11.95 31.12 0.37 -7.05 16 3 C 0.23 11.97 5.09 84.57 0.43 12.40 16 4 N -0.45 -22.99 2.61 -645.42 -1.68 -24.68 16 5 C -0.34 -16.61 7.77 84.04 0.65 -15.96 16 6 H 0.11 5.12 5.74 -2.91 -0.02 5.10 16 7 C -0.01 -0.38 5.16 84.92 0.44 0.06 16 8 N -0.89 -45.64 8.93 21.66 0.19 -45.45 16 9 Si 0.99 38.15 29.57 68.60 2.03 40.18 16 10 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 13 C 0.45 22.39 6.88 87.66 0.60 22.99 16 14 O -0.64 -35.35 15.60 -3.04 -0.05 -35.40 16 15 C -0.08 -3.06 1.75 -11.46 -0.02 -3.08 16 16 C -0.09 -3.07 4.74 30.64 0.15 -2.92 16 17 C 0.07 1.76 4.89 86.32 0.42 2.18 16 18 N -0.54 -14.43 4.68 -871.10 -4.08 -18.51 16 19 C 0.07 1.49 3.03 44.92 0.14 1.62 16 20 C -0.14 -2.62 8.84 71.98 0.64 -1.98 16 21 C -0.18 -3.25 8.50 71.98 0.61 -2.63 16 22 C 0.06 1.84 4.67 86.33 0.40 2.24 16 23 C -0.10 -3.54 5.10 30.65 0.16 -3.39 16 24 H 0.24 8.42 7.80 -4.43 -0.03 8.39 16 25 H 0.12 6.29 5.79 -2.38 -0.01 6.27 16 26 H 0.05 2.65 7.57 -2.38 -0.02 2.63 16 27 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 28 H 0.09 3.25 7.16 -2.38 -0.02 3.23 16 29 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.05 1.99 7.95 -2.38 -0.02 1.97 16 31 H 0.04 1.10 6.63 -2.39 -0.02 1.08 16 32 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.03 6.22 -2.39 -0.01 1.02 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.02 6.54 -2.38 -0.02 1.00 16 39 H 0.05 0.99 6.63 -2.39 -0.02 0.98 16 40 H 0.09 2.31 5.90 -2.39 -0.01 2.30 16 41 H 0.04 1.14 6.71 -2.38 -0.02 1.12 16 42 H 0.07 2.96 6.16 -2.39 -0.01 2.95 16 43 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -61.81 332.40 3.82 -57.98 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.99 Total: 32.17 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.42 Total: -6.30 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -5.57 Total: -88.63 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.05 Total: -35.40 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -61.81 3.82 -57.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491637279.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.592 kcal (2) G-P(sol) polarization free energy of solvation -61.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds