Wall clock time and date at job start Tue Mar 31 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47037 * 228.84347 * 3 2 1 5 5 C 1.34779 * 120.00165 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.46866 * 180.02562 * 7 5 4 9 9 N 1.46902 * 109.46626 * 180.02562 * 8 7 5 10 10 C 1.46852 * 110.99931 * 294.20338 * 9 8 7 11 11 C 1.53038 * 109.52166 * 174.16462 * 10 9 8 12 12 C 1.53111 * 109.27933 * 59.17985 * 11 10 9 13 13 C 1.52999 * 109.57722 * 182.40588 * 12 11 10 14 14 C 1.50695 * 109.47441 * 294.72228 * 13 12 11 15 15 H 1.08002 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47233 * 89.99929 * 18 16 14 20 20 H 1.48506 * 109.47166 * 210.00010 * 18 16 14 21 21 H 1.48493 * 109.47410 * 329.99918 * 18 16 14 22 22 C 1.53113 * 109.16361 * 302.34846 * 12 11 10 23 23 C 1.46845 * 110.99560 * 170.00278 * 9 8 7 24 24 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47367 * 108.84157 * 3 2 1 26 26 H 1.09004 * 109.47592 * 348.84339 * 3 2 1 27 27 H 0.96996 * 119.99985 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47512 * 60.00410 * 7 5 4 29 29 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 30 30 H 1.09000 * 109.47050 * 299.99952 * 8 7 5 31 31 H 1.09001 * 109.46801 * 60.00064 * 8 7 5 32 32 H 1.08996 * 109.46717 * 294.18527 * 10 9 8 33 33 H 1.09002 * 109.45810 * 54.15580 * 10 9 8 34 34 H 1.09009 * 109.50306 * 299.24202 * 11 10 9 35 35 H 1.09000 * 109.50216 * 179.12976 * 11 10 9 36 36 H 1.09011 * 109.52176 * 62.25284 * 12 11 10 37 37 H 1.09002 * 109.46686 * 54.71900 * 13 12 11 38 38 H 1.09001 * 109.47140 * 174.71494 * 13 12 11 39 39 H 0.97000 * 120.00268 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.50089 * 297.70933 * 22 12 11 41 41 H 1.09004 * 109.50328 * 177.59242 * 22 12 11 42 42 H 1.09000 * 109.46228 * 305.85144 * 23 9 8 43 43 H 1.09001 * 109.47085 * 65.82947 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9099 1.0399 5 6 4.4589 1.0722 1.2258 6 8 5.2473 0.4659 0.5317 7 6 4.9608 2.0079 2.2951 8 6 6.4908 2.0085 2.2952 9 7 6.9800 2.9202 3.3381 10 6 6.6249 4.3114 3.0297 11 6 7.0201 5.2120 4.2022 12 6 8.5269 5.0923 4.4461 13 6 8.9198 5.9438 5.6550 14 6 8.6886 7.3994 5.3407 15 1 8.3005 7.6882 4.3751 16 6 8.9723 8.3623 6.2859 17 7 9.4443 8.0105 7.4618 18 14 8.6862 10.1666 5.8960 19 1 7.3044 10.5445 6.2869 20 1 9.6588 10.9965 6.6514 21 1 8.8682 10.3933 4.4398 22 6 8.8774 3.6266 4.7169 23 6 8.4283 2.7719 3.5295 24 1 -1.0502 -0.0001 -0.0004 25 1 3.0092 0.3327 -0.9725 26 1 3.0099 -1.0074 0.1988 27 1 2.5034 1.3945 1.5953 28 1 4.5972 1.6766 3.2678 29 1 4.5974 3.0160 2.0956 30 1 6.8545 1.0005 2.4945 31 1 6.8540 2.3402 1.3225 32 1 7.1540 4.6309 2.1319 33 1 5.5501 4.3834 2.8627 34 1 6.4808 4.9017 5.0973 35 1 6.7705 6.2466 3.9667 36 1 9.0672 5.4392 3.5652 37 1 8.3134 5.6568 6.5140 38 1 9.9734 5.7845 5.8846 39 1 9.6436 8.6879 8.1269 40 1 8.3674 3.2914 5.6201 41 1 9.9549 3.5285 4.8491 42 1 8.6635 1.7258 3.7254 43 1 8.9491 3.0988 2.6295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491708538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:50 Heat of formation + Delta-G solvation = -0.698589 kcal Electronic energy + Delta-G solvation = -20911.750711 eV Core-core repulsion = 17764.509260 eV Total energy + Delta-G solvation = -3147.241451 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09102 -38.64718 -35.90069 -34.81032 -33.05095 -32.54741 -30.90858 -30.23983 -28.07297 -26.90045 -24.26310 -22.86043 -22.19972 -20.76452 -20.37065 -19.02520 -18.85666 -17.28320 -16.35166 -16.20420 -16.14204 -15.38136 -14.94755 -14.51532 -14.32397 -13.95279 -13.89047 -13.61005 -13.40907 -13.08528 -12.88948 -12.22271 -12.05919 -11.80365 -11.45592 -11.28652 -11.26225 -11.00842 -10.95384 -10.76376 -10.61969 -10.54230 -10.23915 -10.06929 -9.90890 -9.50301 -9.46240 -9.01716 -8.84568 -8.30684 -8.08004 -5.95375 -3.96694 1.94701 2.26646 2.39815 3.12311 3.33365 3.39918 3.42874 3.77946 4.10319 4.48945 4.62563 4.84648 4.98669 5.08536 5.17142 5.35411 5.36972 5.39732 5.46946 5.49238 5.58323 5.73399 5.84902 5.88456 5.92688 5.98151 6.04725 6.17788 6.28271 6.48566 6.60991 6.70605 7.00611 7.01204 7.10626 7.13564 7.22684 7.35062 7.40955 7.73472 7.89745 7.90436 8.05781 8.48953 9.09985 9.66561 11.15943 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.002717 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.388928 B =10304.112013 C =11034.294534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.211 4.211 3 C 0.230 3.770 4 N -0.733 5.733 5 C 0.519 3.481 6 O -0.539 6.539 7 C -0.137 4.137 8 C 0.071 3.929 9 N -0.538 5.538 10 C 0.051 3.949 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.222 0.778 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.405 0.595 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 -15.223 -12.416 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.211 4.211 3 C 0.107 3.893 4 N -0.387 5.387 5 C 0.306 3.694 6 O -0.415 6.415 7 C -0.177 4.177 8 C -0.057 4.057 9 N -0.263 5.263 10 C -0.076 4.076 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.150 4.150 23 C -0.067 4.067 24 H 0.239 0.761 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.240 0.760 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.297 -15.717 -12.321 24.561 hybrid contribution -0.366 1.500 -0.652 1.676 sum -14.663 -14.217 -12.972 24.195 Atomic orbital electron populations 1.25062 0.95979 0.99122 0.98647 1.22943 0.94294 1.01807 1.02060 1.18057 0.83079 0.95359 0.92789 1.46045 1.07616 1.47139 1.37898 1.20860 0.81423 0.82433 0.84679 1.90720 1.55097 1.48039 1.47675 1.21675 0.98145 0.99576 0.98329 1.21745 0.92357 0.97904 0.93733 1.61938 1.14718 1.05975 1.43685 1.22283 0.99552 0.87722 0.98076 1.21542 0.97120 0.98314 0.96718 1.21240 0.94765 0.93398 1.00693 1.19116 0.96448 0.93481 0.91866 1.21257 1.42540 0.91732 0.99649 0.92740 1.25023 0.95489 0.98851 0.95198 1.69963 1.44968 1.33359 1.05277 0.86655 0.77903 0.85495 0.78294 1.20747 1.21334 1.19991 1.21696 1.00036 0.96024 0.97204 1.22086 0.86470 0.99850 0.98273 0.76098 0.89079 0.89046 0.76014 0.87706 0.88502 0.90313 0.94365 0.95396 0.91605 0.91854 0.90968 0.93077 0.96513 0.96767 0.93120 0.91584 0.92118 0.91542 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 19.25 29.55 0.57 -0.41 16 2 C -0.21 -1.51 13.46 -37.12 -0.50 -2.01 16 3 C 0.23 1.74 6.15 -6.83 -0.04 1.69 16 4 N -0.73 -5.74 5.54 -63.16 -0.35 -6.09 16 5 C 0.52 5.41 7.83 -10.99 -0.09 5.32 16 6 O -0.54 -7.59 15.98 5.56 0.09 -7.50 16 7 C -0.14 -1.33 5.63 -27.88 -0.16 -1.48 16 8 C 0.07 0.88 4.25 -3.82 -0.02 0.87 16 9 N -0.54 -7.71 4.66 -234.66 -1.09 -8.80 16 10 C 0.05 0.76 5.29 -3.83 -0.02 0.74 16 11 C -0.10 -1.82 5.15 -26.65 -0.14 -1.96 16 12 C -0.08 -1.68 2.20 -90.50 -0.20 -1.88 16 13 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 14 C -0.51 -14.30 8.45 -34.44 -0.29 -14.59 16 15 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 23 C 0.06 0.91 5.46 -3.83 -0.02 0.89 16 24 H 0.22 0.52 7.80 -54.08 -0.42 0.10 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.41 2.33 8.45 -40.82 -0.34 1.98 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.85 6.43 -51.93 -0.33 0.51 16 30 H 0.08 1.00 7.94 -51.93 -0.41 0.58 16 31 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.07 1.41 7.06 -51.93 -0.37 1.04 16 36 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -32.50 353.67 -8.77 -41.27 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.19 Total: -1.76 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.27 Total: -12.84 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.71 Total: -41.12 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.50 -8.77 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.573 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds