Wall clock time and date at job start Tue Mar 31 2020 01:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47037 * 228.84347 * 3 2 1 5 5 C 1.34779 * 120.00165 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.46866 * 180.02562 * 7 5 4 9 9 N 1.46902 * 109.46626 * 180.02562 * 8 7 5 10 10 C 1.46852 * 110.99931 * 294.20338 * 9 8 7 11 11 C 1.53038 * 109.52166 * 174.16462 * 10 9 8 12 12 C 1.53111 * 109.27933 * 59.17985 * 11 10 9 13 13 C 1.52999 * 109.57722 * 182.40588 * 12 11 10 14 14 C 1.50695 * 109.47441 * 294.72228 * 13 12 11 15 15 H 1.08002 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47233 * 89.99929 * 18 16 14 20 20 H 1.48506 * 109.47166 * 210.00010 * 18 16 14 21 21 H 1.48493 * 109.47410 * 329.99918 * 18 16 14 22 22 C 1.53113 * 109.16361 * 302.34846 * 12 11 10 23 23 C 1.46845 * 110.99560 * 170.00278 * 9 8 7 24 24 H 4.40642 * 5.51364 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47367 * 108.84157 * 3 2 1 26 26 H 1.09004 * 109.47592 * 348.84339 * 3 2 1 27 27 H 0.96996 * 119.99985 * 0.02562 * 4 3 2 28 28 H 1.08993 * 109.47512 * 60.00410 * 7 5 4 29 29 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 30 30 H 1.09000 * 109.47050 * 299.99952 * 8 7 5 31 31 H 1.09001 * 109.46801 * 60.00064 * 8 7 5 32 32 H 1.08996 * 109.46717 * 294.18527 * 10 9 8 33 33 H 1.09002 * 109.45810 * 54.15580 * 10 9 8 34 34 H 1.09009 * 109.50306 * 299.24202 * 11 10 9 35 35 H 1.09000 * 109.50216 * 179.12976 * 11 10 9 36 36 H 1.09011 * 109.52176 * 62.25284 * 12 11 10 37 37 H 1.09002 * 109.46686 * 54.71900 * 13 12 11 38 38 H 1.09001 * 109.47140 * 174.71494 * 13 12 11 39 39 H 0.97000 * 120.00268 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.50089 * 297.70933 * 22 12 11 41 41 H 1.09004 * 109.50328 * 177.59242 * 22 12 11 42 42 H 1.09000 * 109.46228 * 305.85144 * 23 9 8 43 43 H 1.09001 * 109.47085 * 65.82947 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9099 1.0399 5 6 4.4589 1.0722 1.2258 6 8 5.2473 0.4659 0.5317 7 6 4.9608 2.0079 2.2951 8 6 6.4908 2.0085 2.2952 9 7 6.9800 2.9202 3.3381 10 6 6.6249 4.3114 3.0297 11 6 7.0201 5.2120 4.2022 12 6 8.5269 5.0923 4.4461 13 6 8.9198 5.9438 5.6550 14 6 8.6886 7.3994 5.3407 15 1 8.3005 7.6882 4.3751 16 6 8.9723 8.3623 6.2859 17 7 9.4443 8.0105 7.4618 18 14 8.6862 10.1666 5.8960 19 1 7.3044 10.5445 6.2869 20 1 9.6588 10.9965 6.6514 21 1 8.8682 10.3933 4.4398 22 6 8.8774 3.6266 4.7169 23 6 8.4283 2.7719 3.5295 24 1 -1.0502 -0.0001 -0.0004 25 1 3.0092 0.3327 -0.9725 26 1 3.0099 -1.0074 0.1988 27 1 2.5034 1.3945 1.5953 28 1 4.5972 1.6766 3.2678 29 1 4.5974 3.0160 2.0956 30 1 6.8545 1.0005 2.4945 31 1 6.8540 2.3402 1.3225 32 1 7.1540 4.6309 2.1319 33 1 5.5501 4.3834 2.8627 34 1 6.4808 4.9017 5.0973 35 1 6.7705 6.2466 3.9667 36 1 9.0672 5.4392 3.5652 37 1 8.3134 5.6568 6.5140 38 1 9.9734 5.7845 5.8846 39 1 9.6436 8.6879 8.1269 40 1 8.3674 3.2914 5.6201 41 1 9.9549 3.5285 4.8491 42 1 8.6635 1.7258 3.7254 43 1 8.9491 3.0988 2.6295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491708538.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:49 Heat of formation + Delta-G solvation = -22.406292 kcal Electronic energy + Delta-G solvation = -20912.692028 eV Core-core repulsion = 17764.509260 eV Total energy + Delta-G solvation = -3148.182768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94422 -39.91644 -36.67553 -36.25595 -34.48941 -33.59698 -32.17353 -31.53366 -29.49582 -27.92524 -25.88371 -24.22250 -23.50561 -22.10308 -21.30695 -20.42452 -19.52950 -18.41614 -18.03754 -17.01569 -16.94381 -16.66344 -16.32526 -15.91472 -15.40253 -15.11109 -14.91105 -14.75372 -14.63478 -14.27560 -14.00159 -13.92624 -13.53006 -13.22596 -12.93894 -12.76151 -12.52594 -12.47988 -12.13833 -12.00230 -11.91546 -11.82776 -11.61189 -11.47817 -11.21518 -10.90144 -10.82333 -10.67366 -10.49694 -10.14854 -9.24275 -8.15302 -6.24752 1.40841 1.41413 1.41978 1.52699 1.57892 1.82406 2.43261 2.45999 3.05747 3.17801 3.34776 3.81467 3.93731 4.06600 4.09271 4.18854 4.25272 4.43080 4.48971 4.54629 4.59357 4.61619 4.72807 4.77929 4.86843 4.91923 4.99638 5.01042 5.04058 5.14222 5.20526 5.30842 5.40914 5.43908 5.49957 5.60880 5.83828 5.91992 6.17038 6.20280 6.32957 6.46194 6.56716 6.91522 7.16764 7.43413 8.96566 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.002717 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.388928 B =10304.112013 C =11034.294534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.249 4.249 3 C 0.230 3.770 4 N -0.720 5.720 5 C 0.521 3.479 6 O -0.581 6.581 7 C -0.129 4.129 8 C 0.075 3.925 9 N -0.541 5.541 10 C 0.060 3.940 11 C -0.093 4.093 12 C -0.077 4.077 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.264 1.264 22 C -0.106 4.106 23 C 0.066 3.934 24 H 0.253 0.747 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.417 0.583 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.044 0.956 37 H -0.010 1.010 38 H -0.016 1.016 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.965 -15.210 -13.661 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.373 5.373 5 C 0.309 3.691 6 O -0.461 6.461 7 C -0.169 4.169 8 C -0.053 4.053 9 N -0.266 5.266 10 C -0.068 4.068 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.003 4.003 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.144 4.144 23 C -0.062 4.062 24 H 0.269 0.731 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.254 0.746 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.008 0.992 38 H 0.002 0.998 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.555 -15.706 -13.571 26.551 hybrid contribution 0.285 1.459 -0.235 1.505 sum -16.270 -14.247 -13.806 25.657 Atomic orbital electron populations 1.25866 0.96734 0.97247 0.96763 1.23014 0.94537 1.03541 1.03800 1.17988 0.83823 0.95024 0.92400 1.45942 1.07058 1.46620 1.37671 1.20952 0.81828 0.82033 0.84316 1.90709 1.56254 1.49805 1.49287 1.21609 0.96149 1.00301 0.98850 1.21712 0.94181 0.97014 0.92391 1.61925 1.14155 1.05869 1.44605 1.22177 1.01312 0.87323 0.95976 1.21416 0.95194 0.98529 0.97988 1.21110 0.96399 0.94368 0.97729 1.19008 0.94048 0.94036 0.93246 1.21647 1.42161 0.92896 0.99873 0.92152 1.25967 0.95181 1.03966 0.94981 1.70104 1.46101 1.35023 1.06403 0.85509 0.78078 0.79323 0.78510 1.19694 1.21088 1.18866 1.21593 1.00078 0.94429 0.98285 1.22011 0.87110 1.00262 0.96801 0.73103 0.89562 0.89432 0.74624 0.86152 0.86971 0.90537 0.95333 0.95525 0.88668 0.92747 0.92382 0.93757 0.99181 0.99777 0.92989 0.92279 0.92203 0.89577 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 19.25 74.32 1.43 0.10 16 2 C -0.25 -3.17 13.46 31.12 0.42 -2.75 16 3 C 0.23 3.29 6.15 84.57 0.52 3.81 16 4 N -0.72 -10.07 5.54 -472.13 -2.61 -12.68 16 5 C 0.52 10.04 7.83 87.66 0.69 10.72 16 6 O -0.58 -15.96 15.98 -3.04 -0.05 -16.01 16 7 C -0.13 -2.17 5.63 29.85 0.17 -2.00 16 8 C 0.08 1.71 4.25 86.31 0.37 2.08 16 9 N -0.54 -14.40 4.66 -896.33 -4.17 -18.58 16 10 C 0.06 1.66 5.29 86.33 0.46 2.12 16 11 C -0.09 -3.39 5.15 30.64 0.16 -3.24 16 12 C -0.08 -3.20 2.20 -10.72 -0.02 -3.23 16 13 C 0.03 1.79 4.45 29.85 0.13 1.93 16 14 C -0.53 -29.91 8.45 25.60 0.22 -29.69 16 15 H 0.06 3.28 7.08 -2.91 -0.02 3.25 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.11 -3.70 5.38 30.65 0.16 -3.54 16 23 C 0.07 1.88 5.46 86.33 0.47 2.35 16 24 H 0.25 0.28 7.80 -4.41 -0.03 0.24 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.42 3.82 8.45 -92.71 -0.78 3.04 16 28 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 1.56 6.43 -2.39 -0.02 1.54 16 30 H 0.08 1.80 7.94 -2.39 -0.02 1.78 16 31 H 0.03 0.72 8.08 -2.39 -0.02 0.70 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 2.12 6.21 -2.39 -0.01 2.10 16 34 H 0.05 2.05 8.14 -2.38 -0.02 2.04 16 35 H 0.06 2.25 7.06 -2.39 -0.02 2.23 16 36 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 39 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.15 8.01 -2.39 -0.02 2.13 16 43 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.43 353.67 1.30 -70.14 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.19 Total: 9.00 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 5.63 Total: -21.09 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -6.50 Total: -88.57 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.05 Total: -16.01 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.43 1.30 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708538.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.730 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds