Wall clock time and date at job start Tue Mar 31 2020 00:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46906 * 156.82548 * 3 2 1 5 5 N 1.46502 * 109.47283 * 36.82351 * 3 2 1 6 6 C 1.34782 * 119.99818 * 84.99761 * 5 3 2 7 7 O 1.21584 * 119.99816 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99656 * 179.97438 * 6 5 3 9 9 C 1.46504 * 119.99597 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.05600 * 325.03877 * 9 8 6 11 11 C 1.53876 * 110.03266 * 86.45674 * 9 8 6 12 12 C 1.54261 * 106.59990 * 119.28382 * 11 9 8 13 13 C 1.54888 * 104.19672 * 23.60631 * 12 11 9 14 14 H 1.09001 * 110.75591 * 80.55981 * 13 12 11 15 15 C 1.50700 * 110.75900 * 203.74240 * 13 12 11 16 16 H 1.08000 * 119.99960 * 118.54346 * 15 13 12 17 17 C 1.37879 * 120.00147 * 298.54740 * 15 13 12 18 18 N 1.31513 * 120.00035 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99763 * 0.02562 * 17 15 13 20 20 H 1.48491 * 109.47606 * 89.99850 * 19 17 15 21 21 H 1.48505 * 109.46701 * 209.99608 * 19 17 15 22 22 H 1.48501 * 109.47226 * 329.99283 * 19 17 15 23 23 C 1.54267 * 110.02925 * 203.62194 * 9 8 6 24 24 C 1.53001 * 109.47095 * 276.82433 * 3 2 1 25 25 C 1.53000 * 109.46854 * 300.00159 * 24 3 2 26 26 C 1.52996 * 109.46917 * 59.99907 * 24 3 2 27 27 H 4.18736 * 15.03906 * 359.97438 * 4 2 1 28 28 H 0.96997 * 119.99788 * 264.99828 * 5 3 2 29 29 H 0.96997 * 119.99950 * 0.02562 * 8 6 5 30 30 H 1.08998 * 110.02768 * 238.56979 * 11 9 8 31 31 H 1.08999 * 110.02894 * 359.94663 * 11 9 8 32 32 H 1.09000 * 110.48928 * 142.28640 * 12 11 9 33 33 H 1.08999 * 110.48469 * 264.93049 * 12 11 9 34 34 H 0.96993 * 119.99904 * 180.02562 * 18 17 15 35 35 H 1.09004 * 110.48597 * 335.78333 * 23 9 8 36 36 H 1.08994 * 110.48679 * 98.42860 * 23 9 8 37 37 H 1.08995 * 109.46936 * 180.02562 * 24 3 2 38 38 H 1.09001 * 109.47443 * 59.99937 * 25 24 3 39 39 H 1.09005 * 109.47205 * 180.02562 * 25 24 3 40 40 H 1.09001 * 109.47328 * 299.99996 * 25 24 3 41 41 H 1.09004 * 109.47151 * 60.00184 * 26 24 3 42 42 H 1.09002 * 109.46945 * 179.97438 * 26 24 3 43 43 H 1.08997 * 109.47598 * 299.99647 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9456 -0.4044 5 7 3.1349 -1.1048 -0.8278 6 6 3.2635 -0.9435 -2.1598 7 8 2.9742 0.1195 -2.6741 8 7 3.7137 -1.9603 -2.9212 9 6 3.8540 -1.7848 -4.3689 10 1 3.0617 -1.1380 -4.7456 11 6 5.2298 -1.1778 -4.6954 12 6 5.9619 -2.2005 -5.5887 13 6 4.8216 -3.0289 -6.2309 14 1 4.3881 -2.4976 -7.0782 15 6 5.3204 -4.3867 -6.6533 16 1 4.8947 -5.2782 -6.2169 17 6 6.3204 -4.4910 -7.5969 18 7 6.7560 -5.6760 -7.9652 19 14 7.0573 -2.9490 -8.3510 20 1 8.2150 -2.5034 -7.5350 21 1 7.5106 -3.2427 -9.7344 22 1 6.0320 -1.8753 -8.3836 23 6 3.7981 -3.1552 -5.0752 24 6 3.1561 -0.1705 1.4323 25 6 2.6455 0.9839 2.2968 26 6 2.6466 -1.4968 1.9999 27 1 -1.0500 -0.0011 -0.0001 28 1 3.3660 -1.9527 -0.4174 29 1 3.9448 -2.8082 -2.5108 30 1 5.1050 -0.2365 -5.2305 31 1 5.7927 -1.0130 -3.7767 32 1 6.5418 -1.6895 -6.3573 33 1 6.6061 -2.8410 -4.9863 34 1 7.4597 -5.7493 -8.6286 35 1 4.0929 -3.9499 -4.3898 36 1 2.7990 -3.3409 -5.4690 37 1 4.2460 -0.1696 1.4323 38 1 1.5555 0.9835 2.2968 39 1 3.0092 0.8623 3.3172 40 1 3.0084 1.9289 1.8924 41 1 3.0104 -2.3193 1.3840 42 1 3.0104 -1.6190 3.0202 43 1 1.5567 -1.4973 2.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491739315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:26 Heat of formation + Delta-G solvation = 7.924485 kcal Electronic energy + Delta-G solvation = -21585.558203 eV Core-core repulsion = 18438.690676 eV Total energy + Delta-G solvation = -3146.867527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19588 -38.16346 -36.94388 -33.77392 -33.22438 -32.42751 -31.90458 -28.50200 -27.85665 -27.60493 -26.21963 -23.53018 -21.33937 -21.15347 -19.76218 -19.46516 -18.53915 -17.84496 -16.90248 -16.17892 -15.66179 -15.48428 -14.99117 -14.61715 -14.53284 -13.92270 -13.82219 -13.45449 -12.99934 -12.78989 -12.53431 -12.45704 -12.36054 -11.78588 -11.64820 -11.40951 -11.21587 -11.08379 -10.95169 -10.69965 -10.46584 -10.23229 -10.15263 -9.97603 -9.84194 -9.74872 -9.45093 -9.37818 -9.01502 -8.62768 -8.52380 -6.07349 -4.06395 2.33143 2.72763 3.16233 3.30579 3.34056 3.40193 3.42564 4.16253 4.35559 4.43243 4.47585 4.60622 4.70497 5.20960 5.22309 5.28112 5.31982 5.40241 5.47649 5.48458 5.57493 5.62440 5.65876 5.80147 5.87860 5.98414 6.14023 6.17197 6.31973 6.37605 6.46286 6.52808 6.58495 6.72601 6.85387 6.92923 7.08093 7.17529 7.50284 7.53471 7.76856 8.13493 8.51832 8.73921 8.95722 9.55950 11.05883 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036436 B = 0.003273 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.287249 B = 8554.060992 C = 8601.554845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.184 4.184 3 C 0.276 3.724 4 H 0.108 0.892 5 N -0.744 5.744 6 C 0.702 3.298 7 O -0.590 6.590 8 N -0.732 5.732 9 C 0.156 3.844 10 H 0.082 0.918 11 C -0.131 4.131 12 C -0.130 4.130 13 C 0.015 3.985 14 H 0.035 0.965 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.903 5.903 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.296 1.296 22 H -0.264 1.264 23 C -0.109 4.109 24 C -0.098 4.098 25 C -0.146 4.146 26 C -0.150 4.150 27 H 0.215 0.785 28 H 0.397 0.603 29 H 0.395 0.605 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 10.058 20.418 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.185 4.185 3 C 0.171 3.829 4 H 0.126 0.874 5 N -0.400 5.400 6 C 0.402 3.598 7 O -0.468 6.468 8 N -0.386 5.386 9 C 0.051 3.949 10 H 0.101 0.899 11 C -0.170 4.170 12 C -0.168 4.168 13 C -0.005 4.005 14 H 0.053 0.947 15 C -0.548 4.548 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.712 3.288 20 H -0.205 1.205 21 H -0.223 1.223 22 H -0.189 1.189 23 C -0.147 4.147 24 C -0.117 4.117 25 C -0.204 4.204 26 C -0.208 4.208 27 H 0.232 0.768 28 H 0.232 0.768 29 H 0.229 0.771 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.951 10.938 19.784 23.964 hybrid contribution 0.530 -0.084 -0.121 0.550 sum -7.421 10.854 19.663 23.654 Atomic orbital electron populations 1.24894 0.95876 1.00131 1.00799 1.23437 0.94679 1.00534 0.99864 1.17677 0.83222 0.91599 0.90444 0.87426 1.45238 1.71944 1.16784 1.06040 1.16041 0.78152 0.84577 0.80990 1.90909 1.57145 1.26402 1.72350 1.45495 1.70121 1.14563 1.08446 1.21718 0.97611 0.98643 0.76899 0.89945 1.22568 0.95849 0.98870 0.99677 1.22817 0.99373 0.96711 0.97918 1.20062 0.91308 0.96237 0.92854 0.94701 1.20973 1.19643 0.91297 1.22852 0.90860 1.24991 0.96385 0.95681 0.96033 1.69900 1.29097 1.22828 1.32311 0.86894 0.79911 0.84057 0.77956 1.20465 1.22325 1.18903 1.22573 1.00148 0.93721 0.98308 1.21371 1.01113 0.96780 0.92421 1.21807 1.01811 0.97441 0.99320 1.21889 1.01879 0.96110 1.00899 0.76843 0.76786 0.77132 0.92283 0.92487 0.93611 0.91513 0.92700 0.91399 0.92208 0.89477 0.92114 0.91998 0.92189 0.92625 0.92074 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 19.25 29.55 0.57 -1.51 16 2 C -0.18 -2.12 10.30 -37.12 -0.38 -2.50 16 3 C 0.28 2.92 2.28 -70.72 -0.16 2.76 16 4 H 0.11 1.31 7.58 -51.93 -0.39 0.92 16 5 N -0.74 -8.34 4.97 -61.44 -0.31 -8.64 16 6 C 0.70 10.71 8.50 -86.92 -0.74 9.97 16 7 O -0.59 -11.39 15.68 5.29 0.08 -11.31 16 8 N -0.73 -10.64 5.00 -57.58 -0.29 -10.93 16 9 C 0.16 2.69 3.22 -66.81 -0.22 2.48 16 10 H 0.08 1.52 7.61 -51.93 -0.40 1.12 16 11 C -0.13 -2.38 6.59 -25.61 -0.17 -2.55 16 12 C -0.13 -2.74 5.07 -25.08 -0.13 -2.87 16 13 C 0.01 0.33 2.30 -89.78 -0.21 0.13 16 14 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 15 C -0.51 -13.92 9.12 -34.44 -0.31 -14.23 16 16 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 17 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 18 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 19 Si 0.88 21.79 24.46 -169.99 -4.16 17.63 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.26 -6.28 6.48 56.52 0.37 -5.91 16 23 C -0.11 -2.05 5.94 -25.07 -0.15 -2.20 16 24 C -0.10 -0.72 2.91 -90.62 -0.26 -0.98 16 25 C -0.15 -0.97 8.94 37.16 0.33 -0.63 16 26 C -0.15 -0.99 8.77 37.16 0.33 -0.67 16 27 H 0.21 1.53 7.80 -54.09 -0.42 1.11 16 28 H 0.40 3.39 6.88 -40.82 -0.28 3.11 16 29 H 0.39 4.74 8.36 -40.82 -0.34 4.40 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 32 H 0.05 0.99 4.90 -51.93 -0.25 0.74 16 33 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 1.24 7.63 -51.93 -0.40 0.85 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.44 7.23 -51.93 -0.38 0.06 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.34 6.51 -51.93 -0.34 0.01 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.46 7.23 -51.93 -0.38 0.08 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -32.95 343.62 -7.22 -40.17 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.91 Total: 5.40 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -1.60 Total: -10.91 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.18 Total: -46.17 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.16 Total: 17.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.95 -7.22 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491739315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.095 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds