Wall clock time and date at job start Tue Mar 31 2020 00:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46906 * 156.82548 * 3 2 1 5 5 N 1.46502 * 109.47283 * 36.82351 * 3 2 1 6 6 C 1.34782 * 119.99818 * 84.99761 * 5 3 2 7 7 O 1.21584 * 119.99816 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99656 * 179.97438 * 6 5 3 9 9 C 1.46504 * 119.99597 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.05600 * 325.03877 * 9 8 6 11 11 C 1.53876 * 110.03266 * 86.45674 * 9 8 6 12 12 C 1.54261 * 106.59990 * 119.28382 * 11 9 8 13 13 C 1.54888 * 104.19672 * 23.60631 * 12 11 9 14 14 H 1.09001 * 110.75591 * 80.55981 * 13 12 11 15 15 C 1.50700 * 110.75900 * 203.74240 * 13 12 11 16 16 H 1.08000 * 119.99960 * 118.54346 * 15 13 12 17 17 C 1.37879 * 120.00147 * 298.54740 * 15 13 12 18 18 N 1.31513 * 120.00035 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99763 * 0.02562 * 17 15 13 20 20 H 1.48491 * 109.47606 * 89.99850 * 19 17 15 21 21 H 1.48505 * 109.46701 * 209.99608 * 19 17 15 22 22 H 1.48501 * 109.47226 * 329.99283 * 19 17 15 23 23 C 1.54267 * 110.02925 * 203.62194 * 9 8 6 24 24 C 1.53001 * 109.47095 * 276.82433 * 3 2 1 25 25 C 1.53000 * 109.46854 * 300.00159 * 24 3 2 26 26 C 1.52996 * 109.46917 * 59.99907 * 24 3 2 27 27 H 4.18736 * 15.03906 * 359.97438 * 4 2 1 28 28 H 0.96997 * 119.99788 * 264.99828 * 5 3 2 29 29 H 0.96997 * 119.99950 * 0.02562 * 8 6 5 30 30 H 1.08998 * 110.02768 * 238.56979 * 11 9 8 31 31 H 1.08999 * 110.02894 * 359.94663 * 11 9 8 32 32 H 1.09000 * 110.48928 * 142.28640 * 12 11 9 33 33 H 1.08999 * 110.48469 * 264.93049 * 12 11 9 34 34 H 0.96993 * 119.99904 * 180.02562 * 18 17 15 35 35 H 1.09004 * 110.48597 * 335.78333 * 23 9 8 36 36 H 1.08994 * 110.48679 * 98.42860 * 23 9 8 37 37 H 1.08995 * 109.46936 * 180.02562 * 24 3 2 38 38 H 1.09001 * 109.47443 * 59.99937 * 25 24 3 39 39 H 1.09005 * 109.47205 * 180.02562 * 25 24 3 40 40 H 1.09001 * 109.47328 * 299.99996 * 25 24 3 41 41 H 1.09004 * 109.47151 * 60.00184 * 26 24 3 42 42 H 1.09002 * 109.46945 * 179.97438 * 26 24 3 43 43 H 1.08997 * 109.47598 * 299.99647 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0089 0.9456 -0.4044 5 7 3.1349 -1.1048 -0.8278 6 6 3.2635 -0.9435 -2.1598 7 8 2.9742 0.1195 -2.6741 8 7 3.7137 -1.9603 -2.9212 9 6 3.8540 -1.7848 -4.3689 10 1 3.0617 -1.1380 -4.7456 11 6 5.2298 -1.1778 -4.6954 12 6 5.9619 -2.2005 -5.5887 13 6 4.8216 -3.0289 -6.2309 14 1 4.3881 -2.4976 -7.0782 15 6 5.3204 -4.3867 -6.6533 16 1 4.8947 -5.2782 -6.2169 17 6 6.3204 -4.4910 -7.5969 18 7 6.7560 -5.6760 -7.9652 19 14 7.0573 -2.9490 -8.3510 20 1 8.2150 -2.5034 -7.5350 21 1 7.5106 -3.2427 -9.7344 22 1 6.0320 -1.8753 -8.3836 23 6 3.7981 -3.1552 -5.0752 24 6 3.1561 -0.1705 1.4323 25 6 2.6455 0.9839 2.2968 26 6 2.6466 -1.4968 1.9999 27 1 -1.0500 -0.0011 -0.0001 28 1 3.3660 -1.9527 -0.4174 29 1 3.9448 -2.8082 -2.5108 30 1 5.1050 -0.2365 -5.2305 31 1 5.7927 -1.0130 -3.7767 32 1 6.5418 -1.6895 -6.3573 33 1 6.6061 -2.8410 -4.9863 34 1 7.4597 -5.7493 -8.6286 35 1 4.0929 -3.9499 -4.3898 36 1 2.7990 -3.3409 -5.4690 37 1 4.2460 -0.1696 1.4323 38 1 1.5555 0.9835 2.2968 39 1 3.0092 0.8623 3.3172 40 1 3.0084 1.9289 1.8924 41 1 3.0104 -2.3193 1.3840 42 1 3.0104 -1.6190 3.0202 43 1 1.5567 -1.4973 2.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491739315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:25 Heat of formation + Delta-G solvation = -14.084686 kcal Electronic energy + Delta-G solvation = -21586.512592 eV Core-core repulsion = 18438.690676 eV Total energy + Delta-G solvation = -3147.821916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35252 -39.37726 -38.11825 -35.29025 -34.44517 -33.68353 -33.13814 -30.22075 -29.28600 -28.13756 -27.23670 -25.37355 -22.45239 -21.91059 -21.25940 -21.08059 -19.61766 -18.94429 -18.65121 -17.30560 -16.92330 -16.62673 -16.43880 -15.81386 -15.49991 -15.48028 -14.83767 -14.77680 -14.27022 -14.13341 -14.06832 -13.60235 -13.31411 -12.96273 -12.84591 -12.61710 -12.41417 -12.27133 -11.94796 -11.83157 -11.76551 -11.64773 -11.57452 -11.51268 -11.24155 -11.16149 -11.02307 -11.01437 -10.68246 -10.48469 -9.84886 -8.27083 -6.29521 1.34577 1.38113 1.39021 1.48461 1.90989 2.10980 2.22523 2.36120 3.09034 3.32194 3.46153 3.81380 3.82744 3.91378 3.99953 4.11132 4.14692 4.57156 4.62902 4.65101 4.67607 4.74332 4.82957 4.91093 4.95758 4.96008 4.98864 5.00182 5.06821 5.13651 5.20465 5.24659 5.37005 5.39000 5.41699 5.48692 5.64517 5.68318 5.79607 6.01333 6.34161 6.69404 6.76947 7.09008 7.36251 7.58374 8.89534 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036436 B = 0.003273 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.287249 B = 8554.060992 C = 8601.554845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.216 4.216 3 C 0.273 3.727 4 H 0.088 0.912 5 N -0.726 5.726 6 C 0.701 3.299 7 O -0.632 6.632 8 N -0.724 5.724 9 C 0.168 3.832 10 H 0.074 0.926 11 C -0.122 4.122 12 C -0.126 4.126 13 C 0.006 3.994 14 H 0.030 0.970 15 C -0.508 4.508 16 H 0.039 0.961 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.940 3.060 20 H -0.267 1.267 21 H -0.299 1.299 22 H -0.248 1.248 23 C -0.100 4.100 24 C -0.090 4.090 25 C -0.144 4.144 26 C -0.149 4.149 27 H 0.241 0.759 28 H 0.411 0.589 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 11.388 22.180 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.217 4.217 3 C 0.168 3.832 4 H 0.106 0.894 5 N -0.383 5.383 6 C 0.401 3.599 7 O -0.513 6.513 8 N -0.379 5.379 9 C 0.063 3.937 10 H 0.093 0.907 11 C -0.160 4.160 12 C -0.164 4.164 13 C -0.013 4.013 14 H 0.048 0.952 15 C -0.546 4.546 16 H 0.057 0.943 17 C -0.183 4.183 18 N -0.592 5.592 19 Si 0.766 3.234 20 H -0.192 1.192 21 H -0.226 1.226 22 H -0.172 1.172 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.202 4.202 26 C -0.206 4.206 27 H 0.257 0.743 28 H 0.250 0.750 29 H 0.245 0.755 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.208 12.248 21.610 26.160 hybrid contribution 0.515 -0.565 -0.613 0.980 sum -7.693 11.683 20.996 25.229 Atomic orbital electron populations 1.25671 0.96816 0.98938 0.99845 1.23797 0.95412 1.01651 1.00850 1.17817 0.83143 0.90393 0.91869 0.89400 1.45093 1.70799 1.17749 1.04670 1.16161 0.77816 0.83887 0.82006 1.90885 1.58904 1.28047 1.73423 1.45235 1.70064 1.15229 1.07398 1.21368 0.96939 0.97108 0.78332 0.90734 1.22485 0.95887 0.98053 0.99614 1.22676 0.98658 0.96958 0.98087 1.20041 0.93169 0.93876 0.94229 0.95159 1.21274 1.18872 0.92458 1.22034 0.94250 1.25796 0.97152 0.98501 0.96821 1.70039 1.30319 1.25194 1.33626 0.85960 0.79750 0.80756 0.76904 1.19215 1.22644 1.17216 1.22421 0.99268 0.94908 0.97168 1.21358 1.01581 0.97567 0.90364 1.21804 1.01312 0.97071 1.00036 1.21883 1.01259 0.95640 1.01819 0.74262 0.75038 0.75482 0.91903 0.91221 0.94055 0.92204 0.92677 0.90994 0.91631 0.88442 0.92898 0.90376 0.92408 0.92173 0.90613 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.78 19.25 74.32 1.43 -2.35 16 2 C -0.22 -4.72 10.30 31.13 0.32 -4.40 16 3 C 0.27 5.44 2.28 43.19 0.10 5.54 16 4 H 0.09 2.11 7.58 -2.39 -0.02 2.10 16 5 N -0.73 -14.99 4.97 -466.56 -2.32 -17.31 16 6 C 0.70 20.24 8.50 179.05 1.52 21.77 16 7 O -0.63 -23.77 15.68 -3.98 -0.06 -23.83 16 8 N -0.72 -19.55 5.00 -454.34 -2.27 -21.82 16 9 C 0.17 5.50 3.22 45.72 0.15 5.64 16 10 H 0.07 2.62 7.61 -2.39 -0.02 2.60 16 11 C -0.12 -4.14 6.59 31.32 0.21 -3.93 16 12 C -0.13 -5.08 5.07 31.67 0.16 -4.92 16 13 C 0.01 0.27 2.30 -10.25 -0.02 0.25 16 14 H 0.03 1.39 7.37 -2.39 -0.02 1.37 16 15 C -0.51 -28.06 9.12 25.60 0.23 -27.82 16 16 H 0.04 2.38 8.03 -2.91 -0.02 2.35 16 17 C 0.01 0.81 5.46 84.66 0.46 1.27 16 18 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 19 Si 0.94 44.64 24.46 68.60 1.68 46.32 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.25 -11.05 6.48 99.48 0.64 -10.40 16 23 C -0.10 -3.61 5.94 31.67 0.19 -3.42 16 24 C -0.09 -1.14 2.91 -10.79 -0.03 -1.18 16 25 C -0.14 -1.66 8.94 71.98 0.64 -1.02 16 26 C -0.15 -1.61 8.77 71.98 0.63 -0.98 16 27 H 0.24 2.89 7.80 -4.42 -0.03 2.86 16 28 H 0.41 6.03 6.88 -92.71 -0.64 5.39 16 29 H 0.41 8.80 8.36 -92.71 -0.77 8.03 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 32 H 0.04 1.70 4.90 -2.39 -0.01 1.68 16 33 H 0.06 2.48 8.04 -2.39 -0.02 2.46 16 34 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.07 2.54 7.63 -2.38 -0.02 2.52 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.70 7.23 -2.39 -0.02 0.68 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.58 6.51 -2.39 -0.02 0.57 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.67 7.23 -2.39 -0.02 0.66 16 Total: -1.00 -71.56 343.62 2.84 -68.71 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.47 Total: 22.06 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 5.99 Total: -15.55 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -4.29 Total: -97.72 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.68 Total: 46.32 kcal Total: -71.56 2.84 -68.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491739315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.629 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds