Wall clock time and date at job start Tue Mar 31 2020 00:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 H 1.08994 * 109.46829 * 224.44468 * 3 2 1 5 5 N 1.46495 * 109.46981 * 344.44482 * 3 2 1 6 6 C 1.34777 * 120.00261 * 205.00121 * 5 3 2 7 7 O 1.21596 * 119.99412 * 359.97438 * 6 5 3 8 8 N 1.34771 * 120.00475 * 179.97438 * 6 5 3 9 9 C 1.46503 * 120.00097 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.01653 * 325.69778 * 9 8 6 11 11 C 1.53877 * 110.03187 * 87.09065 * 9 8 6 12 12 C 1.54269 * 106.59712 * 119.28749 * 11 9 8 13 13 C 1.54883 * 104.19596 * 23.60845 * 12 11 9 14 14 H 1.08995 * 110.75937 * 80.56187 * 13 12 11 15 15 C 1.50704 * 110.75552 * 203.74419 * 13 12 11 16 16 H 1.08003 * 120.00040 * 118.54118 * 15 13 12 17 17 C 1.37875 * 120.00071 * 298.54674 * 15 13 12 18 18 N 1.31519 * 120.00026 * 179.97438 * 17 15 13 19 19 Si 1.86806 * 119.99901 * 359.97438 * 17 15 13 20 20 H 1.48498 * 109.47002 * 90.00070 * 19 17 15 21 21 H 1.48502 * 109.46879 * 210.00110 * 19 17 15 22 22 H 1.48502 * 109.46991 * 329.99861 * 19 17 15 23 23 C 1.54261 * 110.03067 * 204.30871 * 9 8 6 24 24 C 1.52997 * 109.47153 * 104.44154 * 3 2 1 25 25 C 1.53006 * 109.47164 * 64.99968 * 24 3 2 26 26 C 1.52999 * 109.47269 * 305.00464 * 24 3 2 27 27 H 4.18734 * 15.03795 * 359.97438 * 4 2 1 28 28 H 0.97006 * 120.00138 * 24.99531 * 5 3 2 29 29 H 0.96999 * 120.00212 * 359.97438 * 8 6 5 30 30 H 1.09005 * 110.03173 * 238.56753 * 11 9 8 31 31 H 1.08996 * 110.03311 * 359.94999 * 11 9 8 32 32 H 1.09000 * 110.48409 * 142.28888 * 12 11 9 33 33 H 1.08999 * 110.48398 * 264.92618 * 12 11 9 34 34 H 0.97002 * 119.99728 * 179.97438 * 18 17 15 35 35 H 1.08997 * 110.48836 * 335.77884 * 23 9 8 36 36 H 1.09003 * 110.48616 * 98.42834 * 23 9 8 37 37 H 1.09000 * 109.47140 * 184.99917 * 24 3 2 38 38 H 1.09001 * 109.47002 * 59.99738 * 25 24 3 39 39 H 1.08993 * 109.46955 * 180.02562 * 25 24 3 40 40 H 1.09000 * 109.47050 * 300.00004 * 25 24 3 41 41 H 1.09001 * 109.47362 * 180.02562 * 26 24 3 42 42 H 1.09002 * 109.46716 * 299.99747 * 26 24 3 43 43 H 1.09000 * 109.47486 * 59.99665 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.7345 0.7196 5 7 3.1349 -1.3297 0.3704 6 6 4.3570 -1.4694 0.9215 7 8 5.0538 -0.4910 1.1107 8 7 4.8065 -2.6932 1.2627 9 6 6.1347 -2.8448 1.8622 10 1 6.8200 -2.1089 1.4418 11 6 6.0468 -2.6717 3.3887 12 6 6.5304 -3.9978 4.0111 13 6 7.4236 -4.6287 2.9143 14 1 8.4185 -4.1836 2.9228 15 6 7.5081 -6.1233 3.0886 16 1 7.1460 -6.7790 2.3105 17 6 8.0476 -6.6535 4.2413 18 7 8.1208 -7.9578 4.3936 19 14 8.6744 -5.5193 5.5868 20 1 7.5721 -5.2208 6.5360 21 1 9.7877 -6.1812 6.3133 22 1 9.1619 -4.2543 4.9806 23 6 6.6691 -4.2696 1.6092 24 6 3.1559 0.3606 -1.3969 25 6 2.7505 1.7971 -1.7333 26 6 2.5462 -0.5951 -2.4243 27 1 -1.0500 -0.0002 -0.0009 28 1 2.5791 -2.1102 0.2191 29 1 4.2505 -3.4736 1.1120 30 1 6.6902 -1.8523 3.7092 31 1 5.0162 -2.4740 3.6833 32 1 7.1118 -3.8062 4.9130 33 1 5.6831 -4.6465 4.2329 34 1 8.5007 -8.3308 5.2045 35 1 5.8443 -4.9624 1.4427 36 1 7.3513 -4.2758 0.7591 37 1 4.2422 0.2747 -1.4205 38 1 3.1848 2.4781 -1.0013 39 1 3.1133 2.0534 -2.7286 40 1 1.6641 1.8830 -1.7097 41 1 2.9098 -0.3390 -3.4195 42 1 2.8350 -1.6185 -2.1847 43 1 1.4598 -0.5092 -2.4007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491739321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:28 Heat of formation + Delta-G solvation = -13.651316 kcal Electronic energy + Delta-G solvation = -21629.470509 eV Core-core repulsion = 18481.667386 eV Total energy + Delta-G solvation = -3147.803124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35915 -39.36252 -38.01927 -35.27683 -34.49188 -33.69295 -33.17656 -30.21580 -29.28303 -28.09606 -27.24888 -25.36869 -22.60255 -21.78978 -21.23238 -21.02355 -19.78643 -18.88266 -18.49986 -17.30099 -16.89902 -16.61296 -16.45175 -15.83037 -15.51388 -15.28932 -15.02987 -14.79800 -14.23429 -14.12746 -14.05857 -13.44502 -13.33202 -12.94060 -12.84203 -12.66853 -12.50340 -12.28789 -11.94192 -11.87418 -11.80054 -11.66563 -11.60056 -11.51208 -11.26645 -11.23413 -11.12553 -11.01847 -10.68185 -10.29225 -9.76114 -8.27061 -6.29441 1.31765 1.34529 1.38601 1.48323 1.86653 2.16298 2.23483 2.36067 3.09109 3.29490 3.36233 3.82667 3.91127 3.92639 4.04679 4.11820 4.16567 4.54747 4.63631 4.67658 4.72691 4.74587 4.79148 4.91794 4.95313 4.96374 4.97739 5.00045 5.03708 5.13807 5.20067 5.25328 5.31144 5.37430 5.42538 5.50242 5.64961 5.69097 5.80178 6.02715 6.34313 6.63434 6.77149 7.09250 7.36338 7.58828 8.89542 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036579 B = 0.003285 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.293057 B = 8520.644518 C = 8570.462267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.227 4.227 3 C 0.280 3.720 4 H 0.085 0.915 5 N -0.729 5.729 6 C 0.705 3.295 7 O -0.629 6.629 8 N -0.725 5.725 9 C 0.169 3.831 10 H 0.079 0.921 11 C -0.122 4.122 12 C -0.126 4.126 13 C 0.006 3.994 14 H 0.031 0.969 15 C -0.508 4.508 16 H 0.039 0.961 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.940 3.060 20 H -0.268 1.268 21 H -0.299 1.299 22 H -0.247 1.247 23 C -0.100 4.100 24 C -0.101 4.101 25 C -0.141 4.141 26 C -0.140 4.140 27 H 0.252 0.748 28 H 0.409 0.591 29 H 0.408 0.592 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 17.502 -11.310 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.228 4.228 3 C 0.175 3.825 4 H 0.103 0.897 5 N -0.384 5.384 6 C 0.405 3.595 7 O -0.510 6.510 8 N -0.380 5.380 9 C 0.063 3.937 10 H 0.097 0.903 11 C -0.161 4.161 12 C -0.164 4.164 13 C -0.013 4.013 14 H 0.050 0.950 15 C -0.546 4.546 16 H 0.057 0.943 17 C -0.183 4.183 18 N -0.592 5.592 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.226 1.226 22 H -0.171 1.171 23 C -0.138 4.138 24 C -0.121 4.121 25 C -0.199 4.199 26 C -0.197 4.197 27 H 0.268 0.732 28 H 0.245 0.755 29 H 0.244 0.756 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.362 18.253 -11.032 26.284 hybrid contribution 0.000 -0.897 0.836 1.226 sum -15.362 17.356 -10.196 25.322 Atomic orbital electron populations 1.25740 0.96458 0.95987 0.98828 1.22749 0.93940 1.03945 1.02151 1.17517 0.83813 0.84202 0.96925 0.89711 1.45008 1.16535 1.10013 1.66825 1.16032 0.81872 0.83758 0.77867 1.90888 1.58321 1.38930 1.62876 1.45241 1.19188 1.07259 1.66287 1.21375 0.82629 0.97494 0.92179 0.90294 1.22497 1.01233 0.97067 0.95338 1.22677 0.99595 0.95971 0.98183 1.20056 0.94768 0.93618 0.92868 0.95042 1.21286 1.39135 0.91490 1.02724 0.94257 1.25802 0.95697 0.96003 1.00804 1.70046 1.47770 1.12804 1.28590 0.85962 0.78059 0.79777 0.79583 1.19356 1.22625 1.17098 1.22435 0.99731 0.93583 0.98018 1.21456 1.00091 0.97106 0.93423 1.21769 1.01885 0.94234 1.02006 1.21785 1.01045 0.98610 0.98256 0.73165 0.75485 0.75575 0.91776 0.91489 0.94081 0.92384 0.92695 0.91135 0.91431 0.91889 0.92878 0.91342 0.91807 0.91972 0.93016 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 19.25 74.32 1.43 -0.40 16 2 C -0.23 -3.78 10.21 31.13 0.32 -3.46 16 3 C 0.28 5.68 2.22 43.19 0.10 5.78 16 4 H 0.09 2.09 7.58 -2.39 -0.02 2.07 16 5 N -0.73 -15.22 4.51 -466.57 -2.11 -17.33 16 6 C 0.70 19.80 8.52 179.06 1.53 21.33 16 7 O -0.63 -22.65 15.67 -4.02 -0.06 -22.72 16 8 N -0.73 -19.28 4.99 -454.35 -2.27 -21.54 16 9 C 0.17 5.42 3.23 45.71 0.15 5.57 16 10 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 11 C -0.12 -4.16 6.59 31.32 0.21 -3.96 16 12 C -0.13 -5.11 5.08 31.67 0.16 -4.95 16 13 C 0.01 0.27 2.30 -10.22 -0.02 0.25 16 14 H 0.03 1.43 7.37 -2.39 -0.02 1.41 16 15 C -0.51 -28.05 9.12 25.60 0.23 -27.81 16 16 H 0.04 2.37 8.03 -2.91 -0.02 2.35 16 17 C 0.01 0.79 5.46 84.65 0.46 1.25 16 18 N -0.95 -58.98 13.96 21.45 0.30 -58.69 16 19 Si 0.94 44.68 24.46 68.60 1.68 46.36 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.25 -10.97 6.48 99.48 0.64 -10.32 16 23 C -0.10 -3.57 5.95 31.70 0.19 -3.38 16 24 C -0.10 -1.86 2.87 -10.79 -0.03 -1.90 16 25 C -0.14 -2.16 9.00 71.98 0.65 -1.51 16 26 C -0.14 -2.13 8.75 71.98 0.63 -1.50 16 27 H 0.25 0.99 7.80 -4.42 -0.03 0.95 16 28 H 0.41 6.53 8.59 -92.70 -0.80 5.73 16 29 H 0.41 8.81 8.36 -92.71 -0.78 8.03 16 30 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.07 2.15 7.92 -2.39 -0.02 2.13 16 32 H 0.04 1.69 4.91 -2.39 -0.01 1.68 16 33 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.07 2.48 7.63 -2.39 -0.02 2.46 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 0.88 7.38 -2.39 -0.02 0.86 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.05 0.82 7.75 -2.39 -0.02 0.80 16 43 H 0.06 0.87 7.09 -2.39 -0.02 0.86 16 Total: -1.00 -69.38 346.03 2.90 -66.47 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.63 Total: 22.14 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 5.99 Total: -14.69 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -4.07 Total: -97.56 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.72 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.68 Total: 46.36 kcal Total: -69.38 2.90 -66.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491739321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.823 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds