Wall clock time and date at job start Tue Mar 31 2020 00:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 10.26048 * 3 2 1 5 5 C 1.52997 * 109.47080 * 250.26071 * 3 2 1 6 6 C 1.52996 * 109.46894 * 175.00375 * 5 3 2 7 7 C 1.53000 * 109.47246 * 179.97438 * 6 5 3 8 8 N 1.46500 * 109.47042 * 130.26045 * 3 2 1 9 9 C 1.34779 * 119.99741 * 275.00292 * 8 3 2 10 10 O 1.21578 * 120.00448 * 359.97438 * 9 8 3 11 11 N 1.34775 * 119.99610 * 179.97438 * 9 8 3 12 12 C 1.46503 * 120.00041 * 179.97438 * 11 9 8 13 13 H 1.09003 * 110.01365 * 325.69864 * 12 11 9 14 14 C 1.53873 * 110.03286 * 87.09212 * 12 11 9 15 15 C 1.54268 * 106.59696 * 119.28885 * 14 12 11 16 16 C 1.54888 * 104.19663 * 23.60746 * 15 14 12 17 17 H 1.09000 * 110.75332 * 80.56321 * 16 15 14 18 18 C 1.50705 * 110.75379 * 203.74355 * 16 15 14 19 19 H 1.07994 * 120.00138 * 118.54845 * 18 16 15 20 20 C 1.37876 * 119.99838 * 298.54903 * 18 16 15 21 21 N 1.31515 * 119.99888 * 180.02562 * 20 18 16 22 22 Si 1.86804 * 120.00212 * 359.97438 * 20 18 16 23 23 H 1.48501 * 109.47177 * 90.00337 * 22 20 18 24 24 H 1.48499 * 109.47169 * 210.00187 * 22 20 18 25 25 H 1.48497 * 109.47013 * 329.99844 * 22 20 18 26 26 C 1.54269 * 110.03294 * 204.30873 * 12 11 9 27 27 H 4.18736 * 15.03981 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47096 * 295.00064 * 5 3 2 29 29 H 1.08994 * 109.47510 * 54.99927 * 5 3 2 30 30 H 1.09001 * 109.46995 * 299.99751 * 6 5 3 31 31 H 1.08998 * 109.47867 * 60.00073 * 6 5 3 32 32 H 1.09001 * 109.47884 * 179.97438 * 7 6 5 33 33 H 1.08996 * 109.47317 * 300.00098 * 7 6 5 34 34 H 1.09004 * 109.47403 * 59.99668 * 7 6 5 35 35 H 0.96997 * 120.00110 * 94.99560 * 8 3 2 36 36 H 0.96999 * 120.00393 * 359.97438 * 11 9 8 37 37 H 1.09005 * 110.02720 * 238.56818 * 14 12 11 38 38 H 1.08993 * 110.03371 * 359.95100 * 14 12 11 39 39 H 1.09002 * 110.48559 * 142.29203 * 15 14 12 40 40 H 1.08998 * 110.48295 * 264.92591 * 15 14 12 41 41 H 0.97006 * 120.00090 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.48703 * 335.78805 * 26 12 11 43 43 H 1.09004 * 110.48123 * 98.42411 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0104 -0.1831 5 6 3.1557 0.4881 1.3577 6 6 4.6806 0.3711 1.4018 7 6 5.1905 0.8591 2.7593 8 7 3.1339 0.8935 -1.0540 9 6 3.2627 0.4387 -2.3162 10 8 2.9745 -0.7126 -2.5800 11 7 3.7111 1.2603 -3.2860 12 6 3.8517 0.7659 -4.6579 13 1 4.1517 -0.2820 -4.6479 14 6 2.5217 0.9263 -5.4149 15 6 2.8046 1.8606 -6.6094 16 6 4.3267 1.7128 -6.8552 17 1 4.5398 0.8085 -7.4252 18 6 4.8742 2.9272 -7.5599 19 1 5.6302 3.5333 -7.0829 20 6 4.4101 3.2644 -8.8137 21 7 4.8883 4.3239 -9.4288 22 14 3.1030 2.2157 -9.6391 23 1 1.7566 2.7259 -9.2757 24 1 3.2752 2.2792 -11.1127 25 1 3.2382 0.8083 -9.1852 26 6 4.8972 1.6076 -5.4184 27 1 -1.0500 -0.0011 0.0003 28 1 2.8669 1.5292 1.5018 29 1 2.7214 -0.1223 2.1494 30 1 4.9694 -0.6700 1.2577 31 1 5.1150 0.9816 0.6102 32 1 6.2768 0.7754 2.7910 33 1 4.9017 1.9002 2.9030 34 1 4.7562 0.2490 3.5513 35 1 3.3641 1.8120 -0.8436 36 1 3.9407 2.1789 -3.0756 37 1 2.1767 -0.0437 -5.7731 38 1 1.7714 1.3712 -4.7614 39 1 2.2434 1.5388 -7.4867 40 1 2.5576 2.8912 -6.3544 41 1 4.5620 4.5610 -10.3111 42 1 4.9889 2.5972 -4.9709 43 1 5.8622 1.1007 -5.4264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491783500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:35 Heat of formation + Delta-G solvation = 2.702840 kcal Electronic energy + Delta-G solvation = -21431.860057 eV Core-core repulsion = 18284.766103 eV Total energy + Delta-G solvation = -3147.093954 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12971 -37.90909 -36.64584 -33.80482 -33.70509 -32.61623 -31.87835 -29.21039 -28.40230 -27.31839 -24.46985 -23.51214 -21.53724 -21.24340 -19.76388 -19.48059 -18.55609 -18.07450 -16.95331 -16.33037 -15.50196 -15.29536 -15.05565 -14.76594 -14.43346 -14.04449 -13.85428 -13.74712 -12.86205 -12.74435 -12.53284 -12.36287 -12.30145 -11.95041 -11.62903 -11.43271 -11.07842 -11.03082 -10.95242 -10.72816 -10.46630 -10.26915 -10.15055 -9.97949 -9.83855 -9.74730 -9.45148 -9.37036 -9.01455 -8.62026 -8.52268 -6.07349 -4.06371 2.32337 2.70627 3.17267 3.30656 3.33596 3.40253 3.42612 4.10572 4.38751 4.43278 4.59729 4.62688 4.76926 5.09570 5.19919 5.22101 5.32599 5.39275 5.43234 5.48678 5.58541 5.62667 5.75234 5.83614 5.84854 5.98167 6.14076 6.17237 6.32324 6.38427 6.46645 6.52878 6.58534 6.72633 6.85606 6.93172 7.08112 7.17840 7.48816 7.53482 7.76891 8.14069 8.51776 8.74308 8.95717 9.56004 11.05836 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027914 B = 0.003445 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.830016 B = 8124.730583 C = 8751.391889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.274 3.726 4 H 0.109 0.891 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.152 4.152 8 N -0.742 5.742 9 C 0.703 3.297 10 O -0.590 6.590 11 N -0.733 5.733 12 C 0.156 3.844 13 H 0.083 0.917 14 C -0.131 4.131 15 C -0.130 4.130 16 C 0.015 3.985 17 H 0.035 0.965 18 C -0.510 4.510 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.903 5.903 22 Si 0.882 3.118 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.264 1.264 26 C -0.109 4.109 27 H 0.216 0.784 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.397 0.603 36 H 0.395 0.605 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.786 -6.139 22.652 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.198 4.198 3 C 0.168 3.832 4 H 0.126 0.874 5 C -0.158 4.158 6 C -0.163 4.163 7 C -0.210 4.210 8 N -0.398 5.398 9 C 0.403 3.597 10 O -0.468 6.468 11 N -0.386 5.386 12 C 0.051 3.949 13 H 0.101 0.899 14 C -0.170 4.170 15 C -0.168 4.168 16 C -0.005 4.005 17 H 0.053 0.947 18 C -0.548 4.548 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.712 3.288 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.189 1.189 26 C -0.147 4.147 27 H 0.233 0.767 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.015 -7.110 22.215 23.668 hybrid contribution -0.948 0.487 -0.419 1.145 sum -4.963 -6.623 21.796 23.315 Atomic orbital electron populations 1.24939 0.95938 1.00318 0.99815 1.23611 0.94866 1.00608 1.00677 1.17610 0.82858 0.95853 0.86837 0.87368 1.21873 0.96394 1.02524 0.94993 1.21537 0.94381 1.02251 0.98099 1.21768 1.01085 1.01190 0.96922 1.45185 1.71935 1.15342 1.07327 1.16032 0.78220 0.85104 0.80366 1.90908 1.56892 1.17314 1.81714 1.45496 1.70309 1.14231 1.08605 1.21718 0.96102 0.98959 0.78085 0.89872 1.22568 0.96667 0.99984 0.97781 1.22819 0.99879 0.98672 0.95448 1.20073 0.90611 0.97912 0.91856 0.94699 1.20973 1.23145 1.09325 1.01316 0.90845 1.24989 0.96340 0.94747 0.97003 1.69903 1.43541 1.25901 1.14784 0.86898 0.82284 0.81818 0.77842 1.20489 1.22319 1.18897 1.22583 0.96427 0.98527 0.97191 0.76743 0.90953 0.89979 0.91547 0.91393 0.92548 0.92689 0.92751 0.76875 0.77123 0.92314 0.92564 0.93624 0.91538 0.92703 0.91407 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 19.25 29.55 0.57 -1.52 16 2 C -0.20 -2.34 12.84 -37.12 -0.48 -2.81 16 3 C 0.27 2.85 2.41 -70.72 -0.17 2.68 16 4 H 0.11 1.28 7.58 -51.93 -0.39 0.89 16 5 C -0.12 -0.84 4.71 -26.73 -0.13 -0.97 16 6 C -0.13 -0.84 5.82 -26.73 -0.16 -0.99 16 7 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 8 N -0.74 -8.12 4.50 -61.44 -0.28 -8.40 16 9 C 0.70 10.59 8.50 -86.92 -0.74 9.85 16 10 O -0.59 -11.32 15.67 5.30 0.08 -11.24 16 11 N -0.73 -10.54 4.99 -57.58 -0.29 -10.83 16 12 C 0.16 2.68 3.23 -66.81 -0.22 2.47 16 13 H 0.08 1.51 7.59 -51.93 -0.39 1.12 16 14 C -0.13 -2.42 6.59 -25.61 -0.17 -2.59 16 15 C -0.13 -2.77 5.08 -25.07 -0.13 -2.89 16 16 C 0.01 0.33 2.30 -89.74 -0.21 0.13 16 17 H 0.03 0.82 7.37 -51.93 -0.38 0.44 16 18 C -0.51 -13.91 9.12 -34.44 -0.31 -14.23 16 19 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 20 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 21 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 22 Si 0.88 21.85 24.46 -169.99 -4.16 17.69 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.26 -6.29 6.48 56.52 0.37 -5.92 16 26 C -0.11 -2.03 5.95 -25.03 -0.15 -2.18 16 27 H 0.22 1.61 7.80 -54.09 -0.42 1.19 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.48 7.75 -51.93 -0.40 0.08 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.40 3.25 8.62 -40.82 -0.35 2.90 16 36 H 0.39 4.69 8.36 -40.82 -0.34 4.35 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 39 H 0.05 1.00 4.91 -51.93 -0.25 0.75 16 40 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -33.09 350.48 -7.73 -40.82 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.14 Total: 4.94 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -2.01 Total: -11.66 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.21 Total: -45.83 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.16 Total: 17.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.09 -7.73 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491783500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.521 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds