Wall clock time and date at job start Tue Mar 31 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47219 * 277.01302 * 3 2 1 5 5 C 1.52998 * 109.46963 * 157.01136 * 3 2 1 6 6 C 1.53005 * 109.47279 * 174.99735 * 5 3 2 7 7 N 1.46503 * 109.47486 * 37.01249 * 3 2 1 8 8 C 1.34774 * 120.00385 * 275.00262 * 7 3 2 9 9 O 1.21590 * 119.99545 * 355.00866 * 8 7 3 10 10 N 1.34774 * 120.00348 * 175.00626 * 8 7 3 11 11 C 1.46927 * 120.62623 * 4.94696 * 10 8 7 12 12 C 1.53619 * 108.54309 * 126.36811 * 11 10 8 13 13 C 1.53039 * 109.24638 * 54.85202 * 12 11 10 14 14 C 1.53006 * 109.46361 * 178.49227 * 13 12 11 15 15 C 1.50696 * 109.46779 * 295.06903 * 14 13 12 16 16 H 1.08008 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99849 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00016 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47577 * 89.99690 * 19 17 15 21 21 H 1.48501 * 109.47140 * 209.99693 * 19 17 15 22 22 H 1.48504 * 109.47213 * 329.99481 * 19 17 15 23 23 C 1.53043 * 109.53577 * 298.51068 * 13 12 11 24 24 C 1.46923 * 120.63064 * 185.21560 * 10 8 7 25 25 H 4.18739 * 15.03947 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.47411 * 295.00028 * 5 3 2 27 27 H 1.09001 * 109.47110 * 55.00207 * 5 3 2 28 28 H 1.08996 * 109.47065 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.47138 * 300.00460 * 6 5 3 30 30 H 1.09001 * 109.46665 * 60.00199 * 6 5 3 31 31 H 0.97003 * 119.99662 * 94.99519 * 7 3 2 32 32 H 1.09005 * 109.57951 * 246.19598 * 11 10 8 33 33 H 1.08998 * 109.59039 * 6.61863 * 11 10 8 34 34 H 1.09003 * 109.63673 * 294.85373 * 12 11 10 35 35 H 1.09006 * 109.45908 * 174.73417 * 12 11 10 36 36 H 1.09003 * 109.45124 * 58.52422 * 13 12 11 37 37 H 1.09000 * 109.46912 * 55.06314 * 14 13 12 38 38 H 1.08994 * 109.47108 * 175.06506 * 14 13 12 39 39 H 0.96999 * 120.00563 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.50041 * 301.41613 * 23 13 12 41 41 H 1.09001 * 109.52227 * 181.32904 * 23 13 12 42 42 H 1.08997 * 109.58772 * 353.38413 * 24 10 8 43 43 H 1.09000 * 109.58109 * 113.65965 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1246 1.0199 5 6 3.1554 1.3288 -0.5634 6 6 4.6802 1.3804 -0.4483 7 7 3.1349 -1.1020 -0.8315 8 6 3.2642 -2.3364 -0.3060 9 8 3.0624 -2.5165 0.8794 10 7 3.6171 -3.3709 -1.0944 11 6 3.9692 -3.1517 -2.5039 12 6 5.3491 -3.7742 -2.7653 13 6 5.3266 -5.2455 -2.3449 14 6 6.6876 -5.8803 -2.6380 15 6 6.9259 -5.8928 -4.1259 16 1 6.1811 -5.4888 -4.7957 17 6 8.0945 -6.4210 -4.6325 18 7 9.0013 -6.9134 -3.8171 19 14 8.3896 -6.4371 -6.4769 20 1 9.0741 -5.1824 -6.8798 21 1 9.2407 -7.6011 -6.8319 22 1 7.0887 -6.5408 -7.1856 23 6 5.0296 -5.3453 -0.8469 24 6 3.6514 -4.7399 -0.5622 25 1 -1.0500 0.0005 0.0002 26 1 2.8670 1.4136 -1.6111 27 1 2.7204 2.1536 0.0011 28 1 5.0431 2.3264 -0.8501 29 1 4.9686 1.2956 0.5994 30 1 5.1152 0.5556 -1.0128 31 1 3.3655 -0.9437 -1.7603 32 1 3.2246 -3.6249 -3.1442 33 1 4.0043 -2.0819 -2.7097 34 1 6.1060 -3.2425 -2.1886 35 1 5.5844 -3.7029 -3.8273 36 1 4.5527 -5.7711 -2.9043 37 1 7.4713 -5.3014 -2.1494 38 1 6.7009 -6.9023 -2.2592 39 1 9.8235 -7.2847 -4.1734 40 1 5.7893 -4.7988 -0.2881 41 1 5.0370 -6.3920 -0.5430 42 1 3.4768 -4.7183 0.5135 43 1 2.8799 -5.3392 -1.0456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491806999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:51 Heat of formation + Delta-G solvation = 7.291629 kcal Electronic energy + Delta-G solvation = -21835.090254 eV Core-core repulsion = 18688.195285 eV Total energy + Delta-G solvation = -3146.894969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.37166 -37.87620 -36.42805 -34.05199 -32.78758 -32.36294 -31.80673 -30.52332 -28.09289 -26.74325 -24.50497 -22.90815 -22.19079 -21.79710 -20.18713 -19.25921 -18.67287 -17.70815 -16.52185 -16.25258 -15.60919 -14.88461 -14.74855 -14.53851 -14.29697 -13.88320 -13.66719 -13.41817 -13.12099 -12.94856 -12.75426 -12.21256 -12.19220 -11.81423 -11.72637 -11.31744 -11.19556 -10.98519 -10.86598 -10.71281 -10.68458 -10.47273 -10.28271 -10.11553 -9.94175 -9.64522 -9.36469 -9.25669 -8.97059 -8.36882 -8.25442 -6.01054 -4.03240 2.30605 2.69014 3.07566 3.29105 3.29448 3.36493 3.38589 3.98396 4.16311 4.43790 4.65729 4.77535 4.99770 5.10468 5.31640 5.34067 5.38332 5.46947 5.48201 5.54593 5.65755 5.68181 5.73619 5.79488 5.81896 6.00963 6.01958 6.11058 6.35184 6.40761 6.41164 6.50921 6.65121 6.95975 6.99489 7.07718 7.10866 7.46628 7.66183 7.80988 7.98761 8.00738 8.40968 8.67582 9.03385 9.60586 11.10172 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003658 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.654263 B = 7652.077358 C = 8135.941004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C 0.270 3.730 4 H 0.110 0.890 5 C -0.124 4.124 6 C -0.153 4.153 7 N -0.740 5.740 8 C 0.709 3.291 9 O -0.595 6.595 10 N -0.621 5.621 11 C 0.109 3.891 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.130 4.130 24 C 0.130 3.870 25 H 0.216 0.784 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 14.806 4.772 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C 0.165 3.835 4 H 0.128 0.872 5 C -0.162 4.162 6 C -0.211 4.211 7 N -0.398 5.398 8 C 0.411 3.589 9 O -0.474 6.474 10 N -0.358 5.358 11 C -0.014 4.014 12 C -0.156 4.156 13 C -0.099 4.099 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 C 0.007 3.993 25 H 0.233 0.767 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.951 14.562 5.635 20.286 hybrid contribution 0.168 -0.050 -1.602 1.612 sum -12.783 14.513 4.032 19.756 Atomic orbital electron populations 1.24928 0.95894 0.99816 1.00628 1.23662 0.94874 1.00639 1.00390 1.17663 0.82770 0.86111 0.96969 0.87224 1.21770 0.97055 0.95291 1.02039 1.21783 0.94408 1.02248 1.02644 1.45328 1.71658 1.07692 1.15158 1.15825 0.77775 0.80414 0.84876 1.90883 1.58839 1.83620 1.14011 1.47340 1.70733 1.06711 1.10976 1.21895 0.98553 0.99677 0.81246 1.21972 0.93835 0.96912 1.02857 1.21178 1.01158 0.94755 0.92763 1.19125 0.89898 0.95555 0.96377 1.21238 1.02689 1.39222 0.92323 0.92624 1.25025 0.96321 0.95521 0.97609 1.69963 1.08483 1.40647 1.34352 0.86651 0.78154 0.77538 0.85978 1.20749 1.21308 1.19913 1.22038 0.95559 1.00565 0.98625 1.21554 0.97937 0.79899 0.99914 0.76720 0.91039 0.89986 0.92133 0.92207 0.92068 0.76427 0.91541 0.91575 0.92233 0.89799 0.92372 0.96647 0.96567 0.93040 0.92041 0.91132 0.89589 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 19.25 29.55 0.57 -1.47 16 2 C -0.19 -2.30 12.84 -37.13 -0.48 -2.78 16 3 C 0.27 2.97 2.46 -70.72 -0.17 2.80 16 4 H 0.11 1.36 7.51 -51.93 -0.39 0.97 16 5 C -0.12 -0.96 5.43 -26.73 -0.15 -1.10 16 6 C -0.15 -1.19 9.80 37.16 0.36 -0.83 16 7 N -0.74 -8.94 4.40 -61.45 -0.27 -9.21 16 8 C 0.71 11.16 8.24 -86.92 -0.72 10.44 16 9 O -0.59 -11.38 15.39 5.29 0.08 -11.30 16 10 N -0.62 -9.35 2.97 -178.24 -0.53 -9.87 16 11 C 0.11 1.47 6.42 -3.49 -0.02 1.45 16 12 C -0.12 -1.98 5.21 -26.39 -0.14 -2.12 16 13 C -0.08 -1.53 2.10 -90.57 -0.19 -1.72 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.85 8.39 -34.44 -0.29 -14.14 16 16 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.13 -2.20 5.36 -26.61 -0.14 -2.35 16 24 C 0.13 2.00 6.44 -3.71 -0.02 1.97 16 25 H 0.22 1.48 7.80 -54.09 -0.42 1.06 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 7.75 -51.93 -0.40 0.13 16 31 H 0.40 3.98 6.09 -40.82 -0.25 3.73 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.71 5.64 -51.93 -0.29 0.42 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.49 6.91 -51.93 -0.36 1.13 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -32.43 350.51 -8.38 -40.81 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.06 Total: 1.78 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.61 Total: -7.82 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.06 Total: -44.81 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.43 -8.38 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491806999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.106 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds