Wall clock time and date at job start Tue Mar 31 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47219 * 277.01302 * 3 2 1 5 5 C 1.52998 * 109.46963 * 157.01136 * 3 2 1 6 6 C 1.53005 * 109.47279 * 174.99735 * 5 3 2 7 7 N 1.46503 * 109.47486 * 37.01249 * 3 2 1 8 8 C 1.34774 * 120.00385 * 275.00262 * 7 3 2 9 9 O 1.21590 * 119.99545 * 355.00866 * 8 7 3 10 10 N 1.34774 * 120.00348 * 175.00626 * 8 7 3 11 11 C 1.46927 * 120.62623 * 4.94696 * 10 8 7 12 12 C 1.53619 * 108.54309 * 126.36811 * 11 10 8 13 13 C 1.53039 * 109.24638 * 54.85202 * 12 11 10 14 14 C 1.53006 * 109.46361 * 178.49227 * 13 12 11 15 15 C 1.50696 * 109.46779 * 295.06903 * 14 13 12 16 16 H 1.08008 * 120.00457 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99849 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00189 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00016 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47577 * 89.99690 * 19 17 15 21 21 H 1.48501 * 109.47140 * 209.99693 * 19 17 15 22 22 H 1.48504 * 109.47213 * 329.99481 * 19 17 15 23 23 C 1.53043 * 109.53577 * 298.51068 * 13 12 11 24 24 C 1.46923 * 120.63064 * 185.21560 * 10 8 7 25 25 H 4.18739 * 15.03947 * 359.97438 * 4 2 1 26 26 H 1.08997 * 109.47411 * 295.00028 * 5 3 2 27 27 H 1.09001 * 109.47110 * 55.00207 * 5 3 2 28 28 H 1.08996 * 109.47065 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.47138 * 300.00460 * 6 5 3 30 30 H 1.09001 * 109.46665 * 60.00199 * 6 5 3 31 31 H 0.97003 * 119.99662 * 94.99519 * 7 3 2 32 32 H 1.09005 * 109.57951 * 246.19598 * 11 10 8 33 33 H 1.08998 * 109.59039 * 6.61863 * 11 10 8 34 34 H 1.09003 * 109.63673 * 294.85373 * 12 11 10 35 35 H 1.09006 * 109.45908 * 174.73417 * 12 11 10 36 36 H 1.09003 * 109.45124 * 58.52422 * 13 12 11 37 37 H 1.09000 * 109.46912 * 55.06314 * 14 13 12 38 38 H 1.08994 * 109.47108 * 175.06506 * 14 13 12 39 39 H 0.96999 * 120.00563 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.50041 * 301.41613 * 23 13 12 41 41 H 1.09001 * 109.52227 * 181.32904 * 23 13 12 42 42 H 1.08997 * 109.58772 * 353.38413 * 24 10 8 43 43 H 1.09000 * 109.58109 * 113.65965 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1246 1.0199 5 6 3.1554 1.3288 -0.5634 6 6 4.6802 1.3804 -0.4483 7 7 3.1349 -1.1020 -0.8315 8 6 3.2642 -2.3364 -0.3060 9 8 3.0624 -2.5165 0.8794 10 7 3.6171 -3.3709 -1.0944 11 6 3.9692 -3.1517 -2.5039 12 6 5.3491 -3.7742 -2.7653 13 6 5.3266 -5.2455 -2.3449 14 6 6.6876 -5.8803 -2.6380 15 6 6.9259 -5.8928 -4.1259 16 1 6.1811 -5.4888 -4.7957 17 6 8.0945 -6.4210 -4.6325 18 7 9.0013 -6.9134 -3.8171 19 14 8.3896 -6.4371 -6.4769 20 1 9.0741 -5.1824 -6.8798 21 1 9.2407 -7.6011 -6.8319 22 1 7.0887 -6.5408 -7.1856 23 6 5.0296 -5.3453 -0.8469 24 6 3.6514 -4.7399 -0.5622 25 1 -1.0500 0.0005 0.0002 26 1 2.8670 1.4136 -1.6111 27 1 2.7204 2.1536 0.0011 28 1 5.0431 2.3264 -0.8501 29 1 4.9686 1.2956 0.5994 30 1 5.1152 0.5556 -1.0128 31 1 3.3655 -0.9437 -1.7603 32 1 3.2246 -3.6249 -3.1442 33 1 4.0043 -2.0819 -2.7097 34 1 6.1060 -3.2425 -2.1886 35 1 5.5844 -3.7029 -3.8273 36 1 4.5527 -5.7711 -2.9043 37 1 7.4713 -5.3014 -2.1494 38 1 6.7009 -6.9023 -2.2592 39 1 9.8235 -7.2847 -4.1734 40 1 5.7893 -4.7988 -0.2881 41 1 5.0370 -6.3920 -0.5430 42 1 3.4768 -4.7183 0.5135 43 1 2.8799 -5.3392 -1.0456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491806999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:49 Heat of formation + Delta-G solvation = -11.500134 kcal Electronic energy + Delta-G solvation = -21835.905126 eV Core-core repulsion = 18688.195285 eV Total energy + Delta-G solvation = -3147.709841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55732 -39.12066 -37.50666 -35.70609 -34.26108 -33.32571 -33.02379 -31.76725 -29.78545 -27.70417 -26.15735 -24.20803 -23.60095 -22.71351 -21.57785 -20.55793 -19.62031 -18.82329 -18.38607 -17.52681 -16.70452 -16.50717 -15.93212 -15.65687 -15.39039 -15.20287 -14.85579 -14.63161 -14.46037 -14.23797 -14.11327 -13.74898 -13.37966 -12.97872 -12.87999 -12.73407 -12.50211 -12.38876 -12.30492 -12.17897 -11.92993 -11.74957 -11.61641 -11.34892 -11.20783 -11.08983 -10.96421 -10.82597 -10.50621 -10.44938 -9.49926 -8.14495 -6.24190 1.34923 1.43141 1.43986 1.54587 1.87157 2.01805 2.14693 2.44406 2.97605 3.19382 3.41273 3.89501 3.94861 4.03074 4.07940 4.12744 4.20964 4.36786 4.42070 4.52840 4.61959 4.67967 4.80099 4.84388 4.90448 4.97456 5.06209 5.07985 5.10488 5.13909 5.32089 5.33947 5.39841 5.40793 5.47008 5.56416 5.60520 5.83043 5.91352 5.96060 6.30821 6.66029 6.90940 6.93038 7.44719 7.50158 8.97561 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.003658 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.654263 B = 7652.077358 C = 8135.941004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.234 4.234 3 C 0.268 3.732 4 H 0.088 0.912 5 C -0.112 4.112 6 C -0.153 4.153 7 N -0.726 5.726 8 C 0.705 3.295 9 O -0.634 6.634 10 N -0.624 5.624 11 C 0.118 3.882 12 C -0.112 4.112 13 C -0.072 4.072 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.259 1.259 23 C -0.121 4.121 24 C 0.137 3.863 25 H 0.246 0.754 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.064 0.936 37 H -0.017 1.017 38 H -0.015 1.015 39 H 0.260 0.740 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 16.489 2.915 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.236 4.236 3 C 0.163 3.837 4 H 0.106 0.894 5 C -0.150 4.150 6 C -0.210 4.210 7 N -0.384 5.384 8 C 0.407 3.593 9 O -0.515 6.515 10 N -0.360 5.360 11 C -0.005 4.005 12 C -0.150 4.150 13 C -0.091 4.091 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.183 1.183 23 C -0.160 4.160 24 C 0.014 3.986 25 H 0.262 0.738 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.956 16.282 3.745 22.423 hybrid contribution 0.782 -0.580 -0.962 1.368 sum -14.174 15.702 2.784 21.335 Atomic orbital electron populations 1.25760 0.96807 0.98326 0.99031 1.23982 0.95577 1.02099 1.01898 1.17773 0.82920 0.87018 0.96030 0.89386 1.21733 0.96761 0.93708 1.02828 1.21784 0.94497 1.02677 1.02067 1.45234 1.70681 1.06718 1.15762 1.16012 0.77611 0.81301 0.84404 1.90855 1.60559 1.84345 1.15781 1.47380 1.70609 1.06425 1.11557 1.21917 0.96459 1.01598 0.80481 1.21850 0.95934 0.95179 1.02049 1.21029 0.97726 0.96097 0.94251 1.19021 0.92334 0.93747 0.95377 1.21676 1.02844 1.38400 0.93393 0.91301 1.25982 0.96214 0.95242 1.02714 1.70118 1.09129 1.41997 1.36718 0.85507 0.78497 0.77518 0.79889 1.19903 1.21538 1.18325 1.21917 0.96430 1.00717 0.96901 1.21437 0.96893 0.80481 0.99826 0.73754 0.89638 0.88684 0.90523 0.93044 0.93105 0.75072 0.89684 0.88418 0.93671 0.90374 0.91752 0.99824 0.99652 0.93100 0.93755 0.91006 0.90357 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 19.25 74.32 1.43 -1.95 16 2 C -0.23 -5.18 12.84 31.12 0.40 -4.78 16 3 C 0.27 5.60 2.46 43.18 0.11 5.70 16 4 H 0.09 2.22 7.51 -2.39 -0.02 2.20 16 5 C -0.11 -1.52 5.43 30.60 0.17 -1.35 16 6 C -0.15 -2.14 9.80 71.98 0.71 -1.44 16 7 N -0.73 -16.38 4.40 -466.58 -2.06 -18.43 16 8 C 0.71 21.49 8.24 179.06 1.48 22.97 16 9 O -0.63 -24.31 15.39 -4.00 -0.06 -24.37 16 10 N -0.62 -17.82 2.97 -836.08 -2.48 -20.30 16 11 C 0.12 2.85 6.42 86.51 0.56 3.41 16 12 C -0.11 -3.65 5.21 30.82 0.16 -3.49 16 13 C -0.07 -2.77 2.10 -10.76 -0.02 -2.79 16 14 C 0.03 1.65 4.45 29.85 0.13 1.78 16 15 C -0.53 -28.31 8.39 25.60 0.21 -28.09 16 16 H 0.07 3.46 7.06 -2.91 -0.02 3.44 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 18 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 19 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 23 C -0.12 -4.17 5.36 30.67 0.16 -4.00 16 24 C 0.14 4.09 6.44 86.36 0.56 4.64 16 25 H 0.25 2.57 7.80 -4.42 -0.03 2.54 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.81 7.75 -2.39 -0.02 0.79 16 31 H 0.41 7.10 6.09 -92.71 -0.56 6.53 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.10 1.76 5.64 -2.39 -0.01 1.75 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.65 6.91 -2.38 -0.02 2.64 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 37 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 38 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.08 2.50 6.99 -2.39 -0.02 2.49 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -71.90 350.51 4.64 -67.26 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.41 Total: 16.57 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 6.51 Total: -9.18 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -4.25 Total: -95.36 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.90 4.64 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491806999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.761 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds