Wall clock time and date at job start Tue Mar 31 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47045 * 84.13908 * 3 2 1 5 5 C 1.52998 * 109.46810 * 204.13988 * 3 2 1 6 6 C 1.53006 * 109.47078 * 185.00310 * 5 3 2 7 7 N 1.46495 * 109.47544 * 324.13940 * 3 2 1 8 8 C 1.34778 * 120.00011 * 84.99820 * 7 3 2 9 9 O 1.21581 * 119.99773 * 5.07252 * 8 7 3 10 10 N 1.34775 * 119.99747 * 185.07518 * 8 7 3 11 11 C 1.46928 * 120.63481 * 354.67403 * 10 8 7 12 12 C 1.53626 * 108.54331 * 126.37052 * 11 10 8 13 13 C 1.53035 * 109.24306 * 54.85589 * 12 11 10 14 14 C 1.53002 * 109.46313 * 178.48930 * 13 12 11 15 15 C 1.50701 * 109.46769 * 295.07037 * 14 13 12 16 16 H 1.08001 * 120.00589 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99881 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46791 * 90.00330 * 19 17 15 21 21 H 1.48494 * 109.47444 * 210.00249 * 19 17 15 22 22 H 1.48505 * 109.47285 * 330.00516 * 19 17 15 23 23 C 1.53036 * 109.54095 * 298.51147 * 13 12 11 24 24 C 1.46934 * 120.62623 * 174.95438 * 10 8 7 25 25 H 4.18743 * 15.03909 * 0.02562 * 4 2 1 26 26 H 1.09003 * 109.47367 * 305.00110 * 5 3 2 27 27 H 1.08996 * 109.47711 * 65.00285 * 5 3 2 28 28 H 1.08998 * 109.47220 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46859 * 300.00112 * 6 5 3 30 30 H 1.08996 * 109.46870 * 59.99460 * 6 5 3 31 31 H 0.97007 * 120.00278 * 265.00456 * 7 3 2 32 32 H 1.09003 * 109.58593 * 246.20506 * 11 10 8 33 33 H 1.08998 * 109.58484 * 6.62659 * 11 10 8 34 34 H 1.08994 * 109.63158 * 294.86663 * 12 11 10 35 35 H 1.08999 * 109.45529 * 174.74350 * 12 11 10 36 36 H 1.09005 * 109.45073 * 58.52212 * 13 12 11 37 37 H 1.08998 * 109.46847 * 55.06679 * 14 13 12 38 38 H 1.08995 * 109.47397 * 175.06733 * 14 13 12 39 39 H 0.97001 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49901 * 301.41112 * 23 13 12 41 41 H 1.09000 * 109.52986 * 181.33219 * 23 13 12 42 42 H 1.08991 * 109.58984 * 353.37191 * 24 10 8 43 43 H 1.09003 * 109.58293 * 113.65894 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 -0.1041 -1.0223 5 6 3.1553 1.3172 0.5899 6 6 4.6802 1.3711 0.4759 7 7 3.1349 -1.1185 0.8091 8 6 3.2642 -2.3420 0.2588 9 8 3.0638 -2.4980 -0.9302 10 7 3.6155 -3.3924 1.0266 11 6 3.9739 -3.2011 2.4386 12 6 3.1079 -4.1385 3.2938 13 6 3.2735 -5.5751 2.7928 14 6 2.4423 -6.5181 3.6650 15 6 2.9906 -6.5180 5.0687 16 1 3.8465 -5.9069 5.3142 17 6 2.3994 -7.2983 6.0397 18 7 1.3574 -8.0429 5.7407 19 14 3.0794 -7.2988 7.7796 20 1 2.4076 -6.2389 8.5738 21 1 2.8304 -8.6209 8.4080 22 1 4.5406 -7.0367 7.7401 23 6 2.7963 -5.6693 1.3418 24 6 3.6533 -4.7500 0.4658 25 1 -1.0501 0.0005 -0.0001 26 1 2.7203 2.1533 0.0422 27 1 2.8670 1.3810 1.6391 28 1 5.0430 2.3093 0.8958 29 1 5.1152 0.5351 1.0236 30 1 4.9685 1.3074 -0.5733 31 1 3.3655 -0.9790 1.7410 32 1 5.0277 -3.4390 2.5836 33 1 3.7879 -2.1662 2.7257 34 1 2.0615 -3.8441 3.2148 35 1 3.4255 -4.0773 4.3347 36 1 4.3241 -5.8602 2.8488 37 1 1.4060 -6.1806 3.6797 38 1 2.4899 -7.5275 3.2564 39 1 0.9413 -8.5915 6.4239 40 1 1.7528 -5.3605 1.2812 41 1 2.8922 -6.6975 0.9928 42 1 3.2558 -4.7374 -0.5489 43 1 4.6819 -5.1107 0.4510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491807000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:54 Heat of formation + Delta-G solvation = 7.563865 kcal Electronic energy + Delta-G solvation = -21858.325039 eV Core-core repulsion = 18711.441875 eV Total energy + Delta-G solvation = -3146.883164 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36887 -37.86930 -36.42992 -34.04693 -32.76936 -32.33341 -31.81363 -30.52131 -28.09236 -26.74447 -24.50509 -22.91001 -22.20238 -21.79916 -20.18060 -19.26321 -18.57879 -17.76952 -16.50689 -16.26165 -15.52169 -14.97360 -14.59244 -14.57893 -14.37748 -13.90221 -13.66627 -13.48323 -13.06621 -12.90377 -12.77092 -12.26375 -12.15863 -11.83228 -11.74666 -11.34431 -11.19423 -10.98926 -10.85385 -10.70294 -10.64768 -10.46732 -10.23340 -10.11480 -9.94015 -9.64482 -9.36853 -9.24561 -8.97175 -8.36887 -8.25251 -6.01083 -4.03255 2.34171 2.75865 3.12116 3.29294 3.29959 3.36452 3.38537 3.99247 4.20481 4.43782 4.65698 4.75764 4.98885 5.10437 5.31579 5.33641 5.36351 5.44725 5.47621 5.54250 5.62108 5.68147 5.72135 5.78283 5.87125 5.96440 6.01015 6.10981 6.35875 6.39839 6.42273 6.50690 6.65092 6.95889 6.99626 7.07954 7.10774 7.54316 7.66059 7.80855 7.98720 8.01246 8.40898 8.67867 9.03343 9.60560 11.10178 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.003724 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.673633 B = 7516.378307 C = 7779.686276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.200 4.200 3 C 0.272 3.728 4 H 0.109 0.891 5 C -0.124 4.124 6 C -0.152 4.152 7 N -0.741 5.741 8 C 0.710 3.290 9 O -0.595 6.595 10 N -0.621 5.621 11 C 0.109 3.891 12 C -0.118 4.118 13 C -0.080 4.080 14 C 0.027 3.973 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.130 4.130 24 C 0.130 3.870 25 H 0.216 0.784 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 17.324 -9.205 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.201 4.201 3 C 0.167 3.833 4 H 0.127 0.873 5 C -0.162 4.162 6 C -0.209 4.209 7 N -0.398 5.398 8 C 0.411 3.589 9 O -0.474 6.474 10 N -0.358 5.358 11 C -0.014 4.014 12 C -0.156 4.156 13 C -0.098 4.098 14 C -0.010 4.010 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.168 4.168 24 C 0.008 3.992 25 H 0.233 0.767 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.280 17.059 -9.994 20.229 hybrid contribution 0.027 -0.103 1.640 1.643 sum 4.307 16.956 -8.355 19.387 Atomic orbital electron populations 1.24963 0.95945 0.99424 1.00318 1.23605 0.94866 1.00973 1.00674 1.17637 0.82891 0.85698 0.97105 0.87318 1.21774 0.96875 0.95551 1.02049 1.21773 0.94602 1.02076 1.02477 1.45338 1.71669 1.07916 1.14923 1.15822 0.77714 0.80413 0.84917 1.90878 1.58788 1.84016 1.13733 1.47345 1.70992 1.06588 1.10861 1.21898 0.99693 0.99367 0.80418 1.21971 0.99141 0.95056 0.99457 1.21172 1.00444 0.95199 0.93002 1.19126 0.94750 0.93634 0.93465 1.21238 1.14143 1.25493 0.94599 0.92613 1.25026 0.95062 0.95563 0.98817 1.69967 1.21793 1.27989 1.33704 0.86649 0.79344 0.77317 0.85001 1.20758 1.21298 1.19899 1.22047 0.99495 0.98744 0.96550 1.21550 1.00022 0.79607 0.98040 0.76671 0.89950 0.90958 0.92186 0.92246 0.92280 0.76421 0.91402 0.91595 0.92311 0.89813 0.92321 0.96685 0.96560 0.93045 0.92159 0.91080 0.89673 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.20 -2.53 12.84 -37.12 -0.48 -3.01 16 3 C 0.27 3.03 2.46 -70.72 -0.17 2.86 16 4 H 0.11 1.33 7.51 -51.93 -0.39 0.94 16 5 C -0.12 -0.95 5.43 -26.73 -0.15 -1.09 16 6 C -0.15 -1.05 9.80 37.16 0.36 -0.68 16 7 N -0.74 -9.03 4.41 -61.45 -0.27 -9.30 16 8 C 0.71 11.18 8.24 -86.92 -0.72 10.47 16 9 O -0.60 -11.37 15.41 5.29 0.08 -11.29 16 10 N -0.62 -9.36 2.97 -178.22 -0.53 -9.89 16 11 C 0.11 1.47 6.46 -3.48 -0.02 1.45 16 12 C -0.12 -2.01 5.21 -26.39 -0.14 -2.15 16 13 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 15 C -0.52 -13.90 8.39 -34.44 -0.29 -14.19 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.13 -2.23 5.36 -26.61 -0.14 -2.37 16 24 C 0.13 2.01 6.42 -3.70 -0.02 1.99 16 25 H 0.22 1.78 7.80 -54.09 -0.42 1.36 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 4.04 6.06 -40.82 -0.25 3.79 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.71 5.56 -51.93 -0.29 0.42 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.37 7.03 -51.93 -0.37 1.01 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -32.64 350.48 -8.38 -41.02 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.05 Total: 1.95 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.61 Total: -8.06 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.06 Total: -45.00 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.64 -8.38 -41.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491807000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.580 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds