Wall clock time and date at job start Tue Mar 31 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08998 * 109.47045 * 84.13908 * 3 2 1 5 5 C 1.52998 * 109.46810 * 204.13988 * 3 2 1 6 6 C 1.53006 * 109.47078 * 185.00310 * 5 3 2 7 7 N 1.46495 * 109.47544 * 324.13940 * 3 2 1 8 8 C 1.34778 * 120.00011 * 84.99820 * 7 3 2 9 9 O 1.21581 * 119.99773 * 5.07252 * 8 7 3 10 10 N 1.34775 * 119.99747 * 185.07518 * 8 7 3 11 11 C 1.46928 * 120.63481 * 354.67403 * 10 8 7 12 12 C 1.53626 * 108.54331 * 126.37052 * 11 10 8 13 13 C 1.53035 * 109.24306 * 54.85589 * 12 11 10 14 14 C 1.53002 * 109.46313 * 178.48930 * 13 12 11 15 15 C 1.50701 * 109.46769 * 295.07037 * 14 13 12 16 16 H 1.08001 * 120.00589 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99709 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99881 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46791 * 90.00330 * 19 17 15 21 21 H 1.48494 * 109.47444 * 210.00249 * 19 17 15 22 22 H 1.48505 * 109.47285 * 330.00516 * 19 17 15 23 23 C 1.53036 * 109.54095 * 298.51147 * 13 12 11 24 24 C 1.46934 * 120.62623 * 174.95438 * 10 8 7 25 25 H 4.18743 * 15.03909 * 0.02562 * 4 2 1 26 26 H 1.09003 * 109.47367 * 305.00110 * 5 3 2 27 27 H 1.08996 * 109.47711 * 65.00285 * 5 3 2 28 28 H 1.08998 * 109.47220 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46859 * 300.00112 * 6 5 3 30 30 H 1.08996 * 109.46870 * 59.99460 * 6 5 3 31 31 H 0.97007 * 120.00278 * 265.00456 * 7 3 2 32 32 H 1.09003 * 109.58593 * 246.20506 * 11 10 8 33 33 H 1.08998 * 109.58484 * 6.62659 * 11 10 8 34 34 H 1.08994 * 109.63158 * 294.86663 * 12 11 10 35 35 H 1.08999 * 109.45529 * 174.74350 * 12 11 10 36 36 H 1.09005 * 109.45073 * 58.52212 * 13 12 11 37 37 H 1.08998 * 109.46847 * 55.06679 * 14 13 12 38 38 H 1.08995 * 109.47397 * 175.06733 * 14 13 12 39 39 H 0.97001 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.49901 * 301.41112 * 23 13 12 41 41 H 1.09000 * 109.52986 * 181.33219 * 23 13 12 42 42 H 1.08991 * 109.58984 * 353.37191 * 24 10 8 43 43 H 1.09003 * 109.58293 * 113.65894 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0093 -0.1041 -1.0223 5 6 3.1553 1.3172 0.5899 6 6 4.6802 1.3711 0.4759 7 7 3.1349 -1.1185 0.8091 8 6 3.2642 -2.3420 0.2588 9 8 3.0638 -2.4980 -0.9302 10 7 3.6155 -3.3924 1.0266 11 6 3.9739 -3.2011 2.4386 12 6 3.1079 -4.1385 3.2938 13 6 3.2735 -5.5751 2.7928 14 6 2.4423 -6.5181 3.6650 15 6 2.9906 -6.5180 5.0687 16 1 3.8465 -5.9069 5.3142 17 6 2.3994 -7.2983 6.0397 18 7 1.3574 -8.0429 5.7407 19 14 3.0794 -7.2988 7.7796 20 1 2.4076 -6.2389 8.5738 21 1 2.8304 -8.6209 8.4080 22 1 4.5406 -7.0367 7.7401 23 6 2.7963 -5.6693 1.3418 24 6 3.6533 -4.7500 0.4658 25 1 -1.0501 0.0005 -0.0001 26 1 2.7203 2.1533 0.0422 27 1 2.8670 1.3810 1.6391 28 1 5.0430 2.3093 0.8958 29 1 5.1152 0.5351 1.0236 30 1 4.9685 1.3074 -0.5733 31 1 3.3655 -0.9790 1.7410 32 1 5.0277 -3.4390 2.5836 33 1 3.7879 -2.1662 2.7257 34 1 2.0615 -3.8441 3.2148 35 1 3.4255 -4.0773 4.3347 36 1 4.3241 -5.8602 2.8488 37 1 1.4060 -6.1806 3.6797 38 1 2.4899 -7.5275 3.2564 39 1 0.9413 -8.5915 6.4239 40 1 1.7528 -5.3605 1.2812 41 1 2.8922 -6.6975 0.9928 42 1 3.2558 -4.7374 -0.5489 43 1 4.6819 -5.1107 0.4510 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491807000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:54 Heat of formation + Delta-G solvation = -11.410401 kcal Electronic energy + Delta-G solvation = -21859.147825 eV Core-core repulsion = 18711.441875 eV Total energy + Delta-G solvation = -3147.705950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55902 -39.12343 -37.51174 -35.70752 -34.26004 -33.34061 -33.02361 -31.76724 -29.79112 -27.69965 -26.15993 -24.21437 -23.60386 -22.70908 -21.58346 -20.55478 -19.59381 -18.89408 -18.39204 -17.53188 -16.60342 -16.52759 -16.03178 -15.58281 -15.46028 -15.20927 -14.86635 -14.60572 -14.42703 -14.32451 -13.99979 -13.80004 -13.36031 -12.99564 -12.87252 -12.74060 -12.50210 -12.37719 -12.30744 -12.18095 -11.91254 -11.75546 -11.63195 -11.35859 -11.21547 -11.10244 -10.97530 -10.84056 -10.51199 -10.44331 -9.49867 -8.15051 -6.24817 1.32600 1.42839 1.43723 1.54382 1.84720 2.06813 2.10113 2.44049 2.97044 3.18915 3.40304 3.89241 3.94937 4.02314 4.08763 4.12686 4.20240 4.37832 4.42069 4.52833 4.61581 4.68648 4.80298 4.85953 4.90294 4.96558 5.05878 5.07770 5.11628 5.14580 5.31224 5.33064 5.39055 5.42704 5.47036 5.55692 5.59951 5.82315 5.90559 5.95894 6.30092 6.63817 6.90946 6.92414 7.44176 7.50026 8.97073 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.003724 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.673633 B = 7516.378307 C = 7779.686276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.233 4.233 3 C 0.269 3.731 4 H 0.094 0.906 5 C -0.114 4.114 6 C -0.150 4.150 7 N -0.726 5.726 8 C 0.705 3.295 9 O -0.633 6.633 10 N -0.624 5.624 11 C 0.118 3.882 12 C -0.112 4.112 13 C -0.072 4.072 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.069 0.931 17 C -0.004 4.004 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.259 1.259 23 C -0.122 4.122 24 C 0.138 3.862 25 H 0.242 0.758 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.410 0.590 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.066 0.934 37 H -0.018 1.018 38 H -0.015 1.015 39 H 0.260 0.740 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.203 19.372 -8.240 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.235 4.235 3 C 0.164 3.836 4 H 0.111 0.889 5 C -0.152 4.152 6 C -0.207 4.207 7 N -0.384 5.384 8 C 0.407 3.593 9 O -0.515 6.515 10 N -0.360 5.360 11 C -0.005 4.005 12 C -0.151 4.151 13 C -0.091 4.091 14 C -0.005 4.005 15 C -0.563 4.563 16 H 0.088 0.912 17 C -0.201 4.201 18 N -0.580 5.580 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.182 1.182 23 C -0.160 4.160 24 C 0.015 3.985 25 H 0.258 0.742 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.000 1.000 38 H 0.004 0.996 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.983 19.146 -9.007 21.988 hybrid contribution -0.583 -0.761 1.301 1.617 sum 5.400 18.384 -7.706 20.652 Atomic orbital electron populations 1.25764 0.96954 0.98555 0.99365 1.24139 0.95842 1.01879 1.01618 1.17829 0.82433 0.86783 0.96593 0.88870 1.21744 0.97327 0.93693 1.02429 1.21768 0.93886 1.02794 1.02276 1.45247 1.70682 1.07038 1.15479 1.16007 0.77461 0.81295 0.84526 1.90852 1.60371 1.84734 1.15497 1.47383 1.70888 1.06290 1.11431 1.21931 0.99829 1.00127 0.78571 1.21851 0.99025 0.94315 0.99883 1.21023 0.99528 0.95417 0.93087 1.19025 0.93939 0.93310 0.94239 1.21678 1.14219 1.25066 0.95376 0.91248 1.25987 0.95336 0.95244 1.03570 1.70123 1.23497 1.29168 1.35210 0.85502 0.79345 0.77197 0.79341 1.19957 1.21508 1.18248 1.21927 0.98780 0.99543 0.95765 1.21435 1.00533 0.79589 0.96986 0.74151 0.88848 0.90003 0.90542 0.92625 0.92780 0.75081 0.89270 0.88493 0.94050 0.90374 0.91545 0.99991 0.99616 0.93103 0.94039 0.90906 0.90451 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.18 19.25 74.32 1.43 -2.75 16 2 C -0.23 -5.70 12.84 31.12 0.40 -5.30 16 3 C 0.27 5.68 2.46 43.19 0.11 5.78 16 4 H 0.09 2.27 7.51 -2.39 -0.02 2.25 16 5 C -0.11 -1.49 5.43 30.60 0.17 -1.32 16 6 C -0.15 -1.71 9.80 71.98 0.71 -1.00 16 7 N -0.73 -16.47 4.41 -466.59 -2.06 -18.53 16 8 C 0.71 21.40 8.24 179.05 1.48 22.88 16 9 O -0.63 -24.04 15.41 -3.97 -0.06 -24.10 16 10 N -0.62 -17.74 2.97 -836.04 -2.48 -20.22 16 11 C 0.12 2.83 6.46 86.51 0.56 3.39 16 12 C -0.11 -3.70 5.21 30.82 0.16 -3.54 16 13 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 14 C 0.03 1.64 4.45 29.85 0.13 1.77 16 15 C -0.53 -28.38 8.39 25.60 0.21 -28.16 16 16 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 19 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 23 C -0.12 -4.20 5.36 30.67 0.16 -4.03 16 24 C 0.14 4.10 6.42 86.36 0.55 4.65 16 25 H 0.24 3.57 7.80 -4.41 -0.03 3.54 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.68 7.75 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.41 7.18 6.06 -92.70 -0.56 6.61 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 1.75 5.56 -2.39 -0.01 1.73 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 2.67 6.91 -2.39 -0.02 2.65 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.08 2.47 7.03 -2.39 -0.02 2.45 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.23 350.48 4.64 -67.59 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.42 Total: 17.12 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 6.51 Total: -10.20 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -4.25 Total: -95.51 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -72.23 4.64 -67.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491807000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.177 kcal (2) G-P(sol) polarization free energy of solvation -72.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds