Wall clock time and date at job start Tue Mar 31 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 N 1.46504 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00171 * 270.00606 * 4 3 2 6 6 H 1.08001 * 119.99755 * 334.81268 * 5 4 3 7 7 C 1.38810 * 119.99900 * 154.80671 * 5 4 3 8 8 N 1.31622 * 119.99821 * 0.19618 * 7 5 4 9 9 Si 1.86793 * 119.99919 * 180.19182 * 7 5 4 10 10 H 1.48500 * 109.47147 * 60.00207 * 9 7 5 11 11 H 1.48507 * 109.47094 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47229 * 300.00191 * 9 7 5 13 13 C 1.46502 * 119.99786 * 90.00412 * 4 3 2 14 14 C 1.50701 * 109.46807 * 274.23284 * 13 4 3 15 15 O 1.21345 * 120.00421 * 359.97438 * 14 13 4 16 16 C 1.46461 * 119.99553 * 180.02562 * 14 13 4 17 17 C 1.46896 * 127.06352 * 359.96888 * 16 14 13 18 18 C 1.34354 * 106.35707 * 180.02562 * 17 16 14 19 19 C 1.50696 * 125.41884 * 179.97438 * 18 17 16 20 20 N 1.36492 * 109.15949 * 0.22688 * 18 17 16 21 21 C 1.46510 * 124.77488 * 179.77489 * 20 18 17 22 22 C 1.34482 * 110.45111 * 359.61560 * 20 18 17 23 23 C 1.50708 * 125.92543 * 180.15245 * 22 20 18 24 24 H 1.08997 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46950 * 299.99500 * 1 2 3 26 26 H 1.09002 * 109.47155 * 59.99277 * 1 2 3 27 27 H 1.09003 * 109.46912 * 240.01032 * 2 1 3 28 28 H 1.08995 * 109.47197 * 120.00337 * 2 1 3 29 29 H 1.09003 * 109.46493 * 60.00775 * 3 2 1 30 30 H 1.08989 * 109.47661 * 300.00567 * 3 2 1 31 31 H 0.97004 * 119.99607 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47066 * 154.23568 * 13 4 3 33 33 H 1.09002 * 109.47035 * 34.22918 * 13 4 3 34 34 H 1.07997 * 126.81829 * 359.96901 * 17 16 14 35 35 H 1.09001 * 109.47126 * 90.02708 * 19 18 17 36 36 H 1.08997 * 109.47101 * 330.02023 * 19 18 17 37 37 H 1.09001 * 109.46536 * 210.02189 * 19 18 17 38 38 H 1.08998 * 109.46841 * 90.02492 * 21 20 18 39 39 H 1.08996 * 109.46912 * 210.02832 * 21 20 18 40 40 H 1.09000 * 109.46483 * 330.02909 * 21 20 18 41 41 H 1.09000 * 109.46813 * 270.24829 * 23 22 20 42 42 H 1.09002 * 109.46517 * 30.24390 * 23 22 20 43 43 H 1.08995 * 109.47036 * 150.24539 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4426 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.7277 1.8401 2.0762 7 6 5.4794 0.9306 1.2415 8 7 6.0445 0.4492 0.1546 9 14 6.4121 0.9253 2.8599 10 1 5.6634 0.1226 3.8600 11 1 7.7573 0.3308 2.6540 12 1 6.5574 2.3188 3.3520 13 6 4.2370 1.4429 -1.2697 14 6 4.3971 0.0260 -1.7575 15 8 3.9446 -0.8940 -1.1084 16 6 5.0999 -0.2406 -3.0145 17 6 5.7051 0.7476 -3.9173 18 6 6.2345 0.0531 -4.9383 19 6 6.9635 0.6490 -6.1149 20 7 6.0022 -1.2777 -4.7430 21 6 6.4292 -2.3429 -5.6537 22 6 5.3294 -1.4737 -3.5952 23 6 4.8958 -2.8064 -3.0410 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6767 1.9564 -0.8898 31 1 6.9455 0.0920 0.1940 32 1 5.2202 1.8896 -1.1219 33 1 3.6824 2.0211 -2.0088 34 1 5.7204 1.8195 -3.7868 35 1 8.0272 0.7167 -5.8870 36 1 6.5713 1.6453 -6.3186 37 1 6.8191 0.0157 -6.9903 38 1 7.4233 -2.6876 -5.3690 39 1 5.7261 -3.1738 -5.5959 40 1 6.4558 -1.9597 -6.6738 41 1 3.9033 -3.0516 -3.4192 42 1 5.6030 -3.5760 -3.3505 43 1 4.8676 -2.7555 -1.9526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531255238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:36 Heat of formation + Delta-G solvation = 28.014517 kcal Electronic energy + Delta-G solvation = -22777.159237 eV Core-core repulsion = 19631.162879 eV Total energy + Delta-G solvation = -3145.996357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74697 -37.50755 -35.14866 -32.73915 -32.48028 -31.99247 -30.38562 -28.83941 -27.68404 -25.64579 -25.32718 -24.15131 -22.10194 -20.91979 -19.85906 -18.83542 -17.34140 -16.54776 -15.82534 -15.38236 -14.92340 -14.18844 -14.06867 -13.75328 -13.44739 -13.32331 -13.06421 -12.94661 -12.78093 -12.59313 -12.29646 -12.16628 -12.01303 -11.90577 -11.77114 -11.40548 -11.28392 -11.00815 -10.85623 -10.69976 -10.62925 -10.41065 -10.15855 -9.83377 -9.66326 -9.36364 -8.57374 -7.92566 -7.86952 -7.29126 -6.51416 -5.64455 -3.05734 2.51049 2.99324 3.25011 3.47383 3.52342 3.53363 4.57332 4.75490 4.84099 5.05663 5.14885 5.28533 5.36915 5.48806 5.50857 5.62938 5.67797 5.68730 5.87510 5.95233 5.96165 6.01671 6.05745 6.24177 6.32859 6.44085 6.47813 6.58809 6.69458 6.69614 6.77517 6.82608 6.97037 7.29785 7.41500 7.49657 7.54312 7.64488 7.79916 7.82351 7.88923 8.55973 9.33929 9.61398 10.00991 10.49072 11.43818 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.006376 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.418802 B = 4390.660991 C = 5244.441394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.152 3.848 4 N -0.585 5.585 5 C -0.242 4.242 6 H 0.068 0.932 7 C 0.005 3.995 8 N -0.904 5.904 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.286 1.286 13 C 0.150 3.850 14 C 0.438 3.562 15 O -0.468 6.468 16 C -0.214 4.214 17 C -0.150 4.150 18 C -0.016 4.016 19 C -0.076 4.076 20 N -0.447 5.447 21 C 0.071 3.929 22 C 0.067 3.933 23 C -0.083 4.083 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.254 0.746 32 H 0.109 0.891 33 H 0.026 0.974 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -2.516 -13.166 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.025 3.975 4 N -0.304 5.304 5 C -0.371 4.371 6 H 0.086 0.914 7 C -0.193 4.193 8 N -0.551 5.551 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.213 1.213 13 C 0.023 3.977 14 C 0.314 3.686 15 O -0.344 6.344 16 C -0.222 4.222 17 C -0.175 4.175 18 C -0.123 4.123 19 C -0.133 4.133 20 N -0.126 5.126 21 C -0.072 4.072 22 C -0.046 4.046 23 C -0.140 4.140 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.043 0.957 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.484 -3.263 -13.041 13.451 hybrid contribution 0.914 -0.311 0.723 1.206 sum 0.429 -3.574 -12.317 12.833 Atomic orbital electron populations 1.21801 0.98539 1.00007 1.00277 1.22247 0.92094 1.00606 1.03199 1.20885 0.84804 0.93850 0.97952 1.43808 0.99491 1.84984 1.02152 1.19155 0.96916 1.32899 0.88175 0.91406 1.24982 0.98692 0.98648 0.96928 1.69604 1.14531 1.44954 1.25989 0.86291 0.78812 0.77436 0.83655 1.21254 1.21865 1.21275 1.20860 0.98287 0.92930 0.85640 1.22133 0.73499 0.93289 0.79711 1.90267 1.42419 1.47512 1.54209 1.21849 1.09321 0.90969 1.00076 1.21820 1.02820 0.98415 0.94414 1.19997 1.08860 0.82519 1.00922 1.20225 0.99221 1.00474 0.93430 1.43264 1.45052 1.05880 1.18363 1.21918 1.00945 0.90557 0.93738 1.20786 0.99422 0.96941 0.87496 1.20417 0.99592 0.90083 1.03945 0.94141 0.93783 0.93908 0.91422 0.92341 0.94166 0.95063 0.93552 0.87381 0.95666 0.84235 0.91718 0.90533 0.92628 0.91478 0.90260 0.90281 0.91671 0.93117 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.14 -3.06 5.42 -26.73 -0.14 -3.21 16 3 C 0.15 3.38 5.71 -4.04 -0.02 3.36 16 4 N -0.58 -15.13 2.14 -174.61 -0.37 -15.51 16 5 C -0.24 -6.77 9.67 -15.06 -0.15 -6.92 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C 0.00 0.13 5.30 -17.43 -0.09 0.04 16 8 N -0.90 -26.05 8.44 55.49 0.47 -25.58 16 9 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.15 3.69 4.99 -5.19 -0.03 3.66 16 14 C 0.44 10.76 5.03 -31.00 -0.16 10.60 16 15 O -0.47 -12.54 11.64 5.50 0.06 -12.48 16 16 C -0.21 -4.61 6.29 -103.09 -0.65 -5.26 16 17 C -0.15 -2.80 10.58 -37.45 -0.40 -3.19 16 18 C -0.02 -0.25 6.84 -81.89 -0.56 -0.81 16 19 C -0.08 -0.84 10.05 36.00 0.36 -0.48 16 20 N -0.45 -7.02 3.08 -114.93 -0.35 -7.38 16 21 C 0.07 0.75 10.39 59.85 0.62 1.37 16 22 C 0.07 1.28 6.94 -81.43 -0.56 0.71 16 23 C -0.08 -1.42 9.28 36.01 0.33 -1.08 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.59 5.91 -51.93 -0.31 1.28 16 28 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 30 H 0.03 0.64 7.93 -51.94 -0.41 0.23 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.11 2.88 6.43 -51.93 -0.33 2.55 16 33 H 0.03 0.57 7.95 -51.93 -0.41 0.15 16 34 H 0.14 2.40 8.06 -52.49 -0.42 1.97 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.51 6.91 -51.93 -0.36 0.15 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.74 7.50 -51.93 -0.39 0.35 16 40 H 0.08 0.65 6.87 -51.93 -0.36 0.30 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 43 H 0.10 2.09 6.52 -51.93 -0.34 1.75 16 LS Contribution 343.56 15.07 5.18 5.18 Total: -1.00 -32.63 343.56 -8.18 -40.81 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.07 Total: 0.78 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.07 Total: -3.38 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.26 Total: -48.47 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.63 -8.18 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531255238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.827 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds