Wall clock time and date at job start Tue Mar 31 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46905 * 2 1 4 4 N 1.46504 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00171 * 270.00606 * 4 3 2 6 6 H 1.08001 * 119.99755 * 334.81268 * 5 4 3 7 7 C 1.38810 * 119.99900 * 154.80671 * 5 4 3 8 8 N 1.31622 * 119.99821 * 0.19618 * 7 5 4 9 9 Si 1.86793 * 119.99919 * 180.19182 * 7 5 4 10 10 H 1.48500 * 109.47147 * 60.00207 * 9 7 5 11 11 H 1.48507 * 109.47094 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47229 * 300.00191 * 9 7 5 13 13 C 1.46502 * 119.99786 * 90.00412 * 4 3 2 14 14 C 1.50701 * 109.46807 * 274.23284 * 13 4 3 15 15 O 1.21345 * 120.00421 * 359.97438 * 14 13 4 16 16 C 1.46461 * 119.99553 * 180.02562 * 14 13 4 17 17 C 1.46896 * 127.06352 * 359.96888 * 16 14 13 18 18 C 1.34354 * 106.35707 * 180.02562 * 17 16 14 19 19 C 1.50696 * 125.41884 * 179.97438 * 18 17 16 20 20 N 1.36492 * 109.15949 * 0.22688 * 18 17 16 21 21 C 1.46510 * 124.77488 * 179.77489 * 20 18 17 22 22 C 1.34482 * 110.45111 * 359.61560 * 20 18 17 23 23 C 1.50708 * 125.92543 * 180.15245 * 22 20 18 24 24 H 1.08997 * 109.46795 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46950 * 299.99500 * 1 2 3 26 26 H 1.09002 * 109.47155 * 59.99277 * 1 2 3 27 27 H 1.09003 * 109.46912 * 240.01032 * 2 1 3 28 28 H 1.08995 * 109.47197 * 120.00337 * 2 1 3 29 29 H 1.09003 * 109.46493 * 60.00775 * 3 2 1 30 30 H 1.08989 * 109.47661 * 300.00567 * 3 2 1 31 31 H 0.97004 * 119.99607 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47066 * 154.23568 * 13 4 3 33 33 H 1.09002 * 109.47035 * 34.22918 * 13 4 3 34 34 H 1.07997 * 126.81829 * 359.96901 * 17 16 14 35 35 H 1.09001 * 109.47126 * 90.02708 * 19 18 17 36 36 H 1.08997 * 109.47101 * 330.02023 * 19 18 17 37 37 H 1.09001 * 109.46536 * 210.02189 * 19 18 17 38 38 H 1.08998 * 109.46841 * 90.02492 * 21 20 18 39 39 H 1.08996 * 109.46912 * 210.02832 * 21 20 18 40 40 H 1.09000 * 109.46483 * 330.02909 * 21 20 18 41 41 H 1.09000 * 109.46813 * 270.24829 * 23 22 20 42 42 H 1.09002 * 109.46517 * 30.24390 * 23 22 20 43 43 H 1.08995 * 109.47036 * 150.24539 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4426 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.7277 1.8401 2.0762 7 6 5.4794 0.9306 1.2415 8 7 6.0445 0.4492 0.1546 9 14 6.4121 0.9253 2.8599 10 1 5.6634 0.1226 3.8600 11 1 7.7573 0.3308 2.6540 12 1 6.5574 2.3188 3.3520 13 6 4.2370 1.4429 -1.2697 14 6 4.3971 0.0260 -1.7575 15 8 3.9446 -0.8940 -1.1084 16 6 5.0999 -0.2406 -3.0145 17 6 5.7051 0.7476 -3.9173 18 6 6.2345 0.0531 -4.9383 19 6 6.9635 0.6490 -6.1149 20 7 6.0022 -1.2777 -4.7430 21 6 6.4292 -2.3429 -5.6537 22 6 5.3294 -1.4737 -3.5952 23 6 4.8958 -2.8064 -3.0410 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6767 1.9564 -0.8898 31 1 6.9455 0.0920 0.1940 32 1 5.2202 1.8896 -1.1219 33 1 3.6824 2.0211 -2.0088 34 1 5.7204 1.8195 -3.7868 35 1 8.0272 0.7167 -5.8870 36 1 6.5713 1.6453 -6.3186 37 1 6.8191 0.0157 -6.9903 38 1 7.4233 -2.6876 -5.3690 39 1 5.7261 -3.1738 -5.5959 40 1 6.4558 -1.9597 -6.6738 41 1 3.9033 -3.0516 -3.4192 42 1 5.6030 -3.5760 -3.3505 43 1 4.8676 -2.7555 -1.9526 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531255238.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:35 Heat of formation + Delta-G solvation = 10.224642 kcal Electronic energy + Delta-G solvation = -22777.930664 eV Core-core repulsion = 19631.162879 eV Total energy + Delta-G solvation = -3146.767784 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06233 -39.37434 -37.04291 -34.57919 -33.71316 -33.27077 -32.35509 -30.05688 -29.32276 -27.23159 -26.94437 -25.50406 -23.89003 -22.43862 -21.60943 -20.32233 -18.85296 -18.57192 -17.16639 -16.99375 -16.49838 -15.91181 -15.66018 -15.57419 -15.15673 -14.73128 -14.41820 -14.26824 -14.07733 -13.94404 -13.79825 -13.54770 -13.33959 -13.21465 -13.06928 -12.90724 -12.84790 -12.78917 -12.52077 -12.39720 -12.19944 -12.08217 -12.05539 -11.79616 -11.64459 -11.16990 -10.64759 -9.82407 -9.25343 -8.68690 -8.54126 -7.78493 -5.21355 0.99624 1.44985 1.48492 1.53431 1.61984 2.09352 2.53679 2.97564 3.40007 3.71631 3.93094 4.00366 4.07349 4.28575 4.32959 4.37249 4.41186 4.50090 4.55055 4.65618 4.70487 4.73581 4.82115 4.85489 4.88081 4.97098 4.98269 5.08726 5.12420 5.20913 5.24368 5.28835 5.33452 5.47999 5.52302 5.66287 5.77883 5.86281 6.09983 6.35950 6.44061 6.59260 7.22156 7.72548 8.00276 8.39694 9.25924 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.006376 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.418802 B = 4390.660991 C = 5244.441394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.148 3.852 4 N -0.602 5.602 5 C -0.255 4.255 6 H 0.067 0.933 7 C -0.045 4.045 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.274 1.274 13 C 0.152 3.848 14 C 0.437 3.563 15 O -0.504 6.504 16 C -0.266 4.266 17 C -0.183 4.183 18 C 0.003 3.997 19 C -0.073 4.073 20 N -0.440 5.440 21 C 0.059 3.941 22 C 0.062 3.938 23 C -0.075 4.075 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.021 0.979 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.243 0.757 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -2.885 -15.472 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.023 3.977 4 N -0.322 5.322 5 C -0.386 4.386 6 H 0.085 0.915 7 C -0.240 4.240 8 N -0.564 5.564 9 Si 0.796 3.204 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.200 1.200 13 C 0.026 3.974 14 C 0.316 3.684 15 O -0.383 6.383 16 C -0.274 4.274 17 C -0.207 4.207 18 C -0.106 4.106 19 C -0.130 4.130 20 N -0.118 5.118 21 C -0.081 4.081 22 C -0.054 4.054 23 C -0.133 4.133 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.158 0.842 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.284 -3.618 -15.379 15.801 hybrid contribution 0.855 -0.196 1.333 1.595 sum 0.571 -3.814 -14.046 14.566 Atomic orbital electron populations 1.21688 0.94570 1.01335 1.01900 1.22030 0.95451 0.99283 1.00222 1.21036 0.83066 0.94503 0.99133 1.44020 1.00957 1.85305 1.01925 1.19398 0.97358 1.32799 0.89005 0.91530 1.25680 0.99679 0.98948 0.99713 1.69836 1.13900 1.45489 1.27199 0.85355 0.77102 0.77716 0.80230 1.21459 1.22388 1.19961 1.20777 0.97114 0.93761 0.85778 1.22188 0.73052 0.92547 0.80636 1.90239 1.44201 1.48071 1.55757 1.21716 1.11954 0.93516 1.00222 1.21944 1.04717 0.98552 0.95461 1.20664 1.06567 0.82380 1.00972 1.20380 0.99094 1.01355 0.92218 1.43579 1.43287 1.07163 1.17726 1.22355 1.01913 0.89689 0.94114 1.20917 0.99331 0.96612 0.88560 1.20312 1.01298 0.90433 1.01217 0.93020 0.92367 0.91999 0.93756 0.95992 0.93555 0.93020 0.94762 0.90012 0.93822 0.84182 0.90586 0.89333 0.89704 0.90094 0.88802 0.87156 0.90425 0.89778 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.78 16 2 C -0.13 -5.75 5.42 30.60 0.17 -5.59 16 3 C 0.15 6.70 5.71 86.38 0.49 7.20 16 4 N -0.60 -32.24 2.14 -706.33 -1.51 -33.75 16 5 C -0.26 -14.79 9.67 84.03 0.81 -13.97 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 7 C -0.05 -2.64 5.30 84.86 0.45 -2.19 16 8 N -0.92 -55.22 8.44 21.65 0.18 -55.04 16 9 Si 0.97 47.76 29.55 68.60 2.03 49.78 16 10 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.15 7.86 4.99 85.63 0.43 8.29 16 14 C 0.44 22.57 5.03 27.83 0.14 22.71 16 15 O -0.50 -28.59 11.64 -3.23 -0.04 -28.63 16 16 C -0.27 -11.83 6.29 -18.87 -0.12 -11.95 16 17 C -0.18 -6.87 10.58 23.65 0.25 -6.62 16 18 C 0.00 0.07 6.84 40.94 0.28 0.35 16 19 C -0.07 -1.34 10.05 71.23 0.72 -0.62 16 20 N -0.44 -12.81 3.08 -517.51 -1.59 -14.41 16 21 C 0.06 1.00 10.39 127.77 1.33 2.33 16 22 C 0.06 2.34 6.94 42.15 0.29 2.63 16 23 C -0.08 -2.57 9.28 71.24 0.66 -1.90 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 2.16 5.91 -2.39 -0.01 2.15 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 30 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 31 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.08 4.62 6.43 -2.39 -0.02 4.60 16 33 H 0.04 2.03 7.95 -2.39 -0.02 2.01 16 34 H 0.14 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.09 6.91 -2.39 -0.02 1.07 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.35 7.50 -2.39 -0.02 1.34 16 40 H 0.11 1.21 6.87 -2.39 -0.02 1.20 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.08 2.22 7.60 -2.39 -0.02 2.20 16 43 H 0.06 2.60 6.52 -2.39 -0.02 2.59 16 Total: -1.00 -75.38 343.56 6.65 -68.73 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.98 Total: 16.45 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 6.61 Total: -3.12 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -2.92 Total: -103.20 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.04 Total: -28.63 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -75.38 6.65 -68.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531255238.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.951 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds