Wall clock time and date at job start Tue Mar 31 2020 01:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99865 * 2 1 4 4 N 1.46500 * 109.47406 * 125.00253 * 3 2 1 5 5 C 1.46763 * 124.34498 * 89.99856 * 4 3 2 6 6 C 1.54485 * 105.47003 * 162.98766 * 5 4 3 7 7 C 1.54633 * 101.76385 * 25.41530 * 6 5 4 8 8 H 1.09002 * 110.48515 * 216.39250 * 7 6 5 9 9 N 1.46898 * 110.48438 * 93.88398 * 7 6 5 10 10 C 1.46841 * 110.99751 * 180.02562 * 9 7 6 11 11 C 1.53038 * 109.52458 * 185.83730 * 10 9 7 12 12 C 1.53121 * 109.27869 * 300.81793 * 11 10 9 13 13 C 1.50694 * 109.52587 * 177.55702 * 12 11 10 14 14 H 1.08002 * 120.00179 * 0.12611 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.12928 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00306 * 17 15 13 20 20 H 1.48504 * 109.46636 * 59.99865 * 17 15 13 21 21 C 1.53123 * 109.20944 * 57.62164 * 12 11 10 22 22 C 1.46850 * 110.99888 * 304.20429 * 9 7 6 23 23 C 1.34417 * 124.35011 * 270.00644 * 4 3 2 24 24 O 1.21278 * 124.94141 * 0.43649 * 23 4 3 25 25 H 1.08000 * 119.99865 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00259 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47040 * 5.00089 * 3 2 1 29 29 H 1.09003 * 109.47051 * 245.00774 * 3 2 1 30 30 H 1.09000 * 110.24406 * 43.99036 * 5 4 3 31 31 H 1.09002 * 110.24973 * 281.98233 * 5 4 3 32 32 H 1.09003 * 110.96941 * 267.29966 * 6 5 4 33 33 H 1.08999 * 110.97123 * 143.53315 * 6 5 4 34 34 H 1.09003 * 109.47021 * 65.82214 * 10 9 7 35 35 H 1.09002 * 109.46351 * 305.85195 * 10 9 7 36 36 H 1.09002 * 109.50647 * 180.87883 * 11 10 9 37 37 H 1.09006 * 109.53553 * 60.77790 * 11 10 9 38 38 H 1.08997 * 109.52457 * 297.68649 * 12 11 10 39 39 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.50294 * 62.32144 * 21 12 11 41 41 H 1.09002 * 109.50079 * 182.43680 * 21 12 11 42 42 H 1.09000 * 109.46389 * 294.18024 * 22 9 7 43 43 H 1.09001 * 109.45877 * 54.15987 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3792 0.8509 1.0757 6 6 5.0781 1.4636 2.3097 7 6 3.8862 1.6840 3.2700 8 1 4.0220 2.6018 3.8421 9 7 3.7338 0.5350 4.1723 10 6 2.6041 0.7323 5.0894 11 6 2.5645 -0.4112 6.1057 12 6 2.4171 -1.7424 5.3636 13 6 2.4379 -2.8769 6.3553 14 1 2.5434 -2.6703 7.4101 15 6 2.3223 -4.1787 5.9161 16 7 2.1934 -4.4303 4.6317 17 14 2.3487 -5.5851 7.1452 18 1 2.2080 -6.8755 6.4241 19 1 3.6347 -5.5698 7.8874 20 1 1.2235 -5.4278 8.1015 21 6 3.5792 -1.9018 4.3793 22 6 3.5896 -0.7142 3.4139 23 6 2.6881 1.8003 2.3537 24 8 1.6087 2.2500 2.6753 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6211 1.4027 -0.9315 30 1 4.8611 1.1939 0.1602 31 1 4.4031 -0.2375 1.1305 32 1 5.5559 2.4103 2.0574 33 1 5.7989 0.7661 2.7363 34 1 1.6735 0.7459 4.5218 35 1 2.7233 1.6804 5.6138 36 1 1.7166 -0.2727 6.7766 37 1 3.4887 -0.4172 6.6838 38 1 1.4736 -1.7527 4.8180 39 1 2.1124 -5.3462 4.3226 40 1 4.5201 -1.9317 4.9288 41 1 3.4557 -2.8277 3.8175 42 1 2.6543 -0.6935 2.8545 43 1 4.4249 -0.8171 2.7213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531391154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:48 Heat of formation + Delta-G solvation = -5.639950 kcal Electronic energy + Delta-G solvation = -23129.044907 eV Core-core repulsion = 19981.589182 eV Total energy + Delta-G solvation = -3147.455725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89760 -37.60298 -36.37445 -34.96912 -33.35662 -31.58418 -30.01484 -29.71519 -27.17797 -26.22735 -24.84996 -22.26013 -21.90245 -21.32680 -19.95103 -19.31861 -18.34835 -17.00909 -16.70337 -16.18961 -15.42970 -14.96276 -14.52782 -14.23286 -14.14902 -14.02446 -13.55536 -13.19275 -12.88196 -12.75958 -12.46135 -12.32984 -12.26429 -11.84358 -11.51267 -11.31373 -11.23005 -11.11636 -10.88221 -10.67743 -10.43208 -10.18663 -10.07441 -9.89346 -9.47784 -9.38537 -8.93524 -8.74540 -8.58482 -8.26373 -7.77149 -5.94835 -3.99789 2.16155 2.72967 3.22075 3.34541 3.38662 3.41920 4.23069 4.47120 4.49908 4.56900 4.88272 4.93372 5.07154 5.13918 5.25318 5.34915 5.43609 5.55385 5.65281 5.71187 5.85842 5.91258 5.94442 6.03556 6.17784 6.21897 6.38716 6.50996 6.59544 6.61483 6.68738 6.73723 6.89797 7.08848 7.12495 7.19735 7.40848 7.56798 7.61999 7.81800 8.07573 8.16539 8.30988 8.51027 9.03572 9.64224 11.11337 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.005411 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.401715 B = 5173.143388 C = 5713.194583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.180 4.180 3 C 0.155 3.845 4 N -0.616 5.616 5 C 0.095 3.905 6 C -0.127 4.127 7 C 0.052 3.948 8 H 0.109 0.891 9 N -0.503 5.503 10 C 0.055 3.945 11 C -0.105 4.105 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.288 1.288 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.103 4.103 22 C 0.046 3.954 23 C 0.492 3.508 24 O -0.528 6.528 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.259 0.741 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.025 0.975 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 11.053 -10.637 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.033 3.967 4 N -0.350 5.350 5 C -0.028 4.028 6 C -0.165 4.165 7 C -0.061 4.061 8 H 0.127 0.873 9 N -0.228 5.228 10 C -0.073 4.073 11 C -0.143 4.143 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.718 3.282 18 H -0.214 1.214 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.141 4.141 22 C -0.081 4.081 23 C 0.278 3.722 24 O -0.403 6.403 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.901 11.109 -10.355 15.958 hybrid contribution -0.803 -0.911 0.021 1.215 sum 4.098 10.198 -10.333 15.085 Atomic orbital electron populations 1.23877 0.95907 1.02024 0.98739 1.23280 0.96459 0.98813 1.01402 1.20430 0.91887 0.95989 0.88387 1.48362 1.13057 1.62302 1.11309 1.22338 0.81061 1.00070 0.99313 1.22688 0.97352 1.02510 0.93958 1.22655 0.92559 0.97804 0.93060 0.87288 1.62483 1.43222 1.00508 1.16629 1.22212 0.91146 0.99226 0.94678 1.21684 1.00534 0.95324 0.96776 1.18675 0.94215 0.90566 0.93629 1.21176 1.49404 0.90925 0.93215 0.92782 1.24963 0.95218 0.98731 0.95088 1.69869 1.50561 1.19669 1.13118 0.86691 0.78559 0.81530 0.81402 1.21413 1.20300 1.20393 1.21668 0.99471 0.95643 0.97313 1.22581 0.98662 0.90295 0.96596 1.22145 0.90587 0.76334 0.83166 1.90679 1.26381 1.45709 1.77522 0.88113 0.88596 0.87007 0.89989 0.89863 0.90624 0.90358 0.89771 0.87906 0.94482 0.92176 0.93053 0.92440 0.96268 0.93129 0.93717 0.88874 0.95652 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 14.32 29.02 0.42 -1.77 16 2 C -0.18 -2.38 9.85 -36.02 -0.35 -2.74 16 3 C 0.15 1.85 6.37 -5.19 -0.03 1.82 16 4 N -0.62 -8.31 2.77 -173.78 -0.48 -8.79 16 5 C 0.09 1.01 6.46 -3.12 -0.02 0.99 16 6 C -0.13 -1.35 6.21 -25.09 -0.16 -1.51 16 7 C 0.05 0.76 3.23 -67.72 -0.22 0.54 16 8 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 9 N -0.50 -8.98 4.67 -226.69 -1.06 -10.03 16 10 C 0.05 1.08 5.04 -3.84 -0.02 1.06 16 11 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 12 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 13 C -0.51 -14.16 8.56 -34.44 -0.29 -14.45 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.10 -2.41 5.12 -26.64 -0.14 -2.54 16 22 C 0.05 0.88 4.02 -3.83 -0.02 0.86 16 23 C 0.49 8.18 5.76 -10.86 -0.06 8.12 16 24 O -0.53 -10.75 16.42 5.56 0.09 -10.65 16 25 H 0.10 1.26 8.06 -52.49 -0.42 0.84 16 26 H 0.10 1.18 7.84 -52.49 -0.41 0.76 16 27 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.08 1.04 7.58 -51.93 -0.39 0.64 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.90 6.09 -51.93 -0.32 0.59 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.10 7.56 -51.93 -0.39 0.70 16 34 H 0.04 0.82 6.76 -51.93 -0.35 0.47 16 35 H 0.06 1.08 8.12 -51.93 -0.42 0.65 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 42 H 0.03 0.54 7.25 -51.93 -0.38 0.16 16 43 H 0.06 1.05 4.68 -51.93 -0.24 0.81 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -31.43 333.17 -9.15 -40.58 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.00 Total: 1.80 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.33 Total: -9.47 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.91 Total: -43.71 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.43 -9.15 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531391154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.941 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds