Wall clock time and date at job start Tue Mar 31 2020 01:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99865 * 2 1 4 4 N 1.46500 * 109.47406 * 125.00253 * 3 2 1 5 5 C 1.46763 * 124.34498 * 89.99856 * 4 3 2 6 6 C 1.54485 * 105.47003 * 162.98766 * 5 4 3 7 7 C 1.54633 * 101.76385 * 25.41530 * 6 5 4 8 8 H 1.09002 * 110.48515 * 216.39250 * 7 6 5 9 9 N 1.46898 * 110.48438 * 93.88398 * 7 6 5 10 10 C 1.46841 * 110.99751 * 180.02562 * 9 7 6 11 11 C 1.53038 * 109.52458 * 185.83730 * 10 9 7 12 12 C 1.53121 * 109.27869 * 300.81793 * 11 10 9 13 13 C 1.50694 * 109.52587 * 177.55702 * 12 11 10 14 14 H 1.08002 * 120.00179 * 0.12611 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.12928 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00306 * 17 15 13 20 20 H 1.48504 * 109.46636 * 59.99865 * 17 15 13 21 21 C 1.53123 * 109.20944 * 57.62164 * 12 11 10 22 22 C 1.46850 * 110.99888 * 304.20429 * 9 7 6 23 23 C 1.34417 * 124.35011 * 270.00644 * 4 3 2 24 24 O 1.21278 * 124.94141 * 0.43649 * 23 4 3 25 25 H 1.08000 * 119.99865 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00259 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47040 * 5.00089 * 3 2 1 29 29 H 1.09003 * 109.47051 * 245.00774 * 3 2 1 30 30 H 1.09000 * 110.24406 * 43.99036 * 5 4 3 31 31 H 1.09002 * 110.24973 * 281.98233 * 5 4 3 32 32 H 1.09003 * 110.96941 * 267.29966 * 6 5 4 33 33 H 1.08999 * 110.97123 * 143.53315 * 6 5 4 34 34 H 1.09003 * 109.47021 * 65.82214 * 10 9 7 35 35 H 1.09002 * 109.46351 * 305.85195 * 10 9 7 36 36 H 1.09002 * 109.50647 * 180.87883 * 11 10 9 37 37 H 1.09006 * 109.53553 * 60.77790 * 11 10 9 38 38 H 1.08997 * 109.52457 * 297.68649 * 12 11 10 39 39 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.50294 * 62.32144 * 21 12 11 41 41 H 1.09002 * 109.50079 * 182.43680 * 21 12 11 42 42 H 1.09000 * 109.46389 * 294.18024 * 22 9 7 43 43 H 1.09001 * 109.45877 * 54.15987 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3792 0.8509 1.0757 6 6 5.0781 1.4636 2.3097 7 6 3.8862 1.6840 3.2700 8 1 4.0220 2.6018 3.8421 9 7 3.7338 0.5350 4.1723 10 6 2.6041 0.7323 5.0894 11 6 2.5645 -0.4112 6.1057 12 6 2.4171 -1.7424 5.3636 13 6 2.4379 -2.8769 6.3553 14 1 2.5434 -2.6703 7.4101 15 6 2.3223 -4.1787 5.9161 16 7 2.1934 -4.4303 4.6317 17 14 2.3487 -5.5851 7.1452 18 1 2.2080 -6.8755 6.4241 19 1 3.6347 -5.5698 7.8874 20 1 1.2235 -5.4278 8.1015 21 6 3.5792 -1.9018 4.3793 22 6 3.5896 -0.7142 3.4139 23 6 2.6881 1.8003 2.3537 24 8 1.6087 2.2500 2.6753 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6211 1.4027 -0.9315 30 1 4.8611 1.1939 0.1602 31 1 4.4031 -0.2375 1.1305 32 1 5.5559 2.4103 2.0574 33 1 5.7989 0.7661 2.7363 34 1 1.6735 0.7459 4.5218 35 1 2.7233 1.6804 5.6138 36 1 1.7166 -0.2727 6.7766 37 1 3.4887 -0.4172 6.6838 38 1 1.4736 -1.7527 4.8180 39 1 2.1124 -5.3462 4.3226 40 1 4.5201 -1.9317 4.9288 41 1 3.4557 -2.8277 3.8175 42 1 2.6543 -0.6935 2.8545 43 1 4.4249 -0.8171 2.7213 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531391154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:47 Heat of formation + Delta-G solvation = -25.995842 kcal Electronic energy + Delta-G solvation = -23129.927605 eV Core-core repulsion = 19981.589182 eV Total energy + Delta-G solvation = -3148.338422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10792 -39.17784 -37.61509 -36.29932 -34.98001 -33.23027 -31.61694 -31.16048 -28.55173 -27.42804 -26.49054 -23.86480 -23.60158 -22.47270 -21.18764 -20.61548 -19.94382 -18.54987 -18.00084 -17.84168 -16.66191 -16.56871 -16.03063 -15.58585 -15.48209 -15.32498 -14.90619 -14.50909 -14.47050 -14.31895 -14.05767 -13.94776 -13.44886 -13.08999 -12.90909 -12.78186 -12.72960 -12.46420 -12.39736 -12.26256 -12.00595 -11.89803 -11.85717 -11.44589 -11.23550 -10.84772 -10.66953 -10.52416 -10.38897 -9.71886 -9.26371 -8.08392 -6.22131 1.09989 1.41403 1.42925 1.47877 1.50491 2.19718 2.43614 2.88225 3.18184 3.44934 3.54607 3.87850 4.02628 4.08050 4.11555 4.18696 4.28001 4.33745 4.38634 4.51660 4.57665 4.62565 4.68179 4.73087 4.84435 4.89618 4.93765 5.03681 5.11065 5.14982 5.21170 5.29692 5.51638 5.52470 5.56221 5.60553 5.68914 5.92632 5.96132 6.07897 6.16053 6.21529 6.38750 6.88195 7.10552 7.45476 8.96144 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020162 B = 0.005411 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.401715 B = 5173.143388 C = 5713.194583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.187 4.187 3 C 0.152 3.848 4 N -0.611 5.611 5 C 0.088 3.912 6 C -0.114 4.114 7 C 0.045 3.955 8 H 0.123 0.877 9 N -0.499 5.499 10 C 0.065 3.935 11 C -0.098 4.098 12 C 0.045 3.955 13 C -0.534 4.534 14 H 0.052 0.948 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.955 3.045 18 H -0.283 1.283 19 H -0.268 1.268 20 H -0.276 1.276 21 C -0.093 4.093 22 C 0.064 3.936 23 C 0.479 3.521 24 O -0.578 6.578 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.007 0.993 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.063 0.937 38 H -0.027 1.027 39 H 0.260 0.740 40 H 0.042 0.958 41 H 0.063 0.937 42 H -0.002 1.002 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 11.883 -11.307 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.031 3.969 4 N -0.343 5.343 5 C -0.033 4.033 6 C -0.152 4.152 7 C -0.066 4.066 8 H 0.141 0.859 9 N -0.224 5.224 10 C -0.063 4.063 11 C -0.136 4.136 12 C 0.026 3.974 13 C -0.572 4.572 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.780 3.220 18 H -0.209 1.209 19 H -0.193 1.193 20 H -0.201 1.201 21 C -0.132 4.132 22 C -0.063 4.063 23 C 0.266 3.734 24 O -0.456 6.456 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.025 0.975 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.082 0.918 38 H -0.009 1.009 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.017 0.983 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.360 11.935 -11.053 17.854 hybrid contribution -1.595 -1.177 0.188 1.991 sum 5.765 10.758 -10.865 16.340 Atomic orbital electron populations 1.24007 0.96270 1.02341 0.99042 1.23414 0.96609 0.99396 1.01189 1.20591 0.92122 0.94670 0.89489 1.48508 1.14414 1.60737 1.10663 1.22610 0.79554 0.99654 1.01498 1.22776 0.95594 1.04611 0.92216 1.22878 0.93735 0.96763 0.93271 0.85913 1.62448 1.41604 1.01157 1.17149 1.22036 0.90764 0.99131 0.94377 1.21550 1.00566 0.94417 0.97047 1.18639 0.92856 0.92120 0.93760 1.21526 1.49974 0.92167 0.93548 0.93004 1.25745 0.94722 1.01184 0.96878 1.70017 1.50783 1.20151 1.14716 0.85665 0.78845 0.78344 0.79117 1.20868 1.19266 1.20102 1.21418 0.98116 0.96419 0.97230 1.22325 0.98755 0.89588 0.95673 1.22511 0.90349 0.76160 0.84427 1.90648 1.28268 1.48143 1.78577 0.88213 0.88043 0.87560 0.90937 0.85813 0.86343 0.91263 0.86137 0.87245 0.97505 0.89803 0.93468 0.91829 1.00896 0.93091 0.93954 0.91825 0.98323 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.78 14.32 67.78 0.97 -3.81 16 2 C -0.19 -4.90 9.85 25.65 0.25 -4.65 16 3 C 0.15 3.39 6.37 85.63 0.55 3.94 16 4 N -0.61 -15.20 2.77 -822.31 -2.28 -17.48 16 5 C 0.09 1.53 6.46 86.83 0.56 2.10 16 6 C -0.11 -1.93 6.21 31.66 0.20 -1.73 16 7 C 0.05 1.22 3.23 44.91 0.14 1.37 16 8 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 9 N -0.50 -17.19 4.67 -871.13 -4.07 -21.26 16 10 C 0.06 2.56 5.04 86.33 0.44 3.00 16 11 C -0.10 -4.38 5.32 30.65 0.16 -4.22 16 12 C 0.04 2.37 2.16 -11.46 -0.02 2.35 16 13 C -0.53 -30.48 8.56 25.60 0.22 -30.26 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 15 C 0.01 0.74 5.30 84.66 0.45 1.19 16 16 N -0.92 -53.79 11.36 21.45 0.24 -53.55 16 17 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.09 -4.47 5.12 30.65 0.16 -4.32 16 22 C 0.06 2.43 4.02 86.33 0.35 2.78 16 23 C 0.48 15.46 5.76 87.90 0.51 15.97 16 24 O -0.58 -23.88 16.42 -3.02 -0.05 -23.93 16 25 H 0.10 2.61 8.06 -2.91 -0.02 2.59 16 26 H 0.10 2.56 7.84 -2.91 -0.02 2.53 16 27 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 29 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.37 6.09 -2.39 -0.01 1.35 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.11 1.80 7.56 -2.39 -0.02 1.78 16 34 H 0.01 0.31 6.76 -2.39 -0.02 0.29 16 35 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 38 H -0.03 -1.66 8.14 -2.39 -0.02 -1.68 16 39 H 0.26 14.51 8.31 -92.70 -0.77 13.73 16 40 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 3.42 6.16 -2.39 -0.01 3.41 16 42 H 0.00 -0.07 7.25 -2.39 -0.02 -0.08 16 43 H 0.10 3.06 4.68 -2.39 -0.01 3.05 16 Total: -1.00 -71.94 333.17 1.77 -70.17 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.97 Total: 15.97 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.92 Total: -16.30 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -6.11 Total: -92.28 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.94 1.77 -70.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531391154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.176 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds