Wall clock time and date at job start Tue Mar 31 2020 01:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47199 * 109.47575 * 2 1 4 4 N 2.60800 * 109.47400 * 0.02562 * 2 1 3 5 5 N 1.46504 * 109.46553 * 240.00228 * 2 1 3 6 6 C 1.34777 * 120.00071 * 60.00085 * 5 2 1 7 7 O 1.21281 * 119.99830 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00208 * 179.97438 * 6 5 2 9 9 C 1.52997 * 109.47345 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47279 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00060 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00230 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46837 * 90.00307 * 14 12 10 16 16 H 1.48502 * 109.46878 * 209.99835 * 14 12 10 17 17 H 1.48496 * 109.47304 * 330.00042 * 14 12 10 18 18 C 1.52995 * 109.47324 * 120.00925 * 2 1 3 19 19 C 1.53002 * 109.46925 * 294.99201 * 18 2 1 20 20 C 1.52997 * 109.47415 * 180.02562 * 19 18 2 21 21 C 1.53006 * 109.47164 * 300.00027 * 20 19 18 22 22 C 1.52999 * 109.46626 * 59.99702 * 21 20 19 23 23 C 1.52996 * 109.47577 * 54.99175 * 18 2 1 24 24 H 1.09002 * 109.46499 * 299.99787 * 1 2 3 25 25 H 1.08992 * 109.47322 * 59.99132 * 1 2 3 26 26 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00242 * 239.99572 * 5 2 1 28 28 H 1.08998 * 109.46728 * 300.00029 * 8 6 5 29 29 H 1.09001 * 109.46826 * 59.99915 * 8 6 5 30 30 H 1.08998 * 109.47097 * 300.00476 * 9 8 6 31 31 H 1.09001 * 109.46992 * 59.99664 * 9 8 6 32 32 H 0.96993 * 119.99693 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47575 * 174.99745 * 18 2 1 34 34 H 1.09000 * 109.46986 * 60.00086 * 19 18 2 35 35 H 1.09001 * 109.47601 * 300.00809 * 19 18 2 36 36 H 1.09001 * 109.46922 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47140 * 59.99976 * 20 19 18 38 38 H 1.08993 * 109.46955 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47050 * 300.00004 * 21 20 19 40 40 H 1.09000 * 109.47160 * 60.00369 * 22 21 20 41 41 H 1.09002 * 109.46719 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47054 * 300.00355 * 23 18 2 43 43 H 1.09001 * 109.46997 * 60.00088 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3995 2.4588 0.0011 5 7 2.0182 -0.6906 -1.1963 6 6 1.6926 -0.2301 -2.4203 7 8 0.9950 0.7558 -2.5315 8 6 2.1952 -0.9401 -3.6509 9 6 1.6856 -0.2185 -4.9001 10 6 2.1877 -0.9289 -6.1305 11 1 2.8087 -1.8070 -6.0316 12 6 1.8554 -0.4572 -7.3828 13 7 1.0997 0.6124 -7.5034 14 14 2.4784 -1.3374 -8.9081 15 1 1.5000 -2.3785 -9.3131 16 1 2.6442 -0.3578 -10.0118 17 1 3.7862 -1.9755 -8.6119 18 6 2.0401 -0.7214 1.2491 19 6 1.6355 0.0687 2.4953 20 6 2.1460 -0.6523 3.7444 21 6 1.5363 -2.0542 3.8091 22 6 1.9410 -2.8442 2.5629 23 6 1.4299 -2.1230 1.3135 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 2.5759 -1.4793 -1.1074 28 1 3.2852 -0.9397 -3.6508 29 1 1.8322 -1.9679 -3.6510 30 1 0.5956 -0.2184 -4.9003 31 1 2.0489 0.8092 -4.8996 32 1 0.8662 0.9444 -8.3843 33 1 3.1263 -0.7997 1.2054 34 1 0.5492 0.1470 2.5390 35 1 2.0700 1.0673 2.4494 36 1 1.8573 -0.0896 4.6322 37 1 3.2323 -0.7302 3.7004 38 1 1.8997 -2.5676 4.6992 39 1 0.4500 -1.9762 3.8531 40 1 3.0273 -2.9221 2.5190 41 1 1.5063 -3.8427 2.6088 42 1 0.3436 -2.0447 1.3573 43 1 1.7182 -2.6859 0.4257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558670355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:42 Heat of formation + Delta-G solvation = -43.119790 kcal Electronic energy + Delta-G solvation = -21921.861032 eV Core-core repulsion = 18772.780059 eV Total energy + Delta-G solvation = -3149.080972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.60797 -38.65427 -36.47188 -34.90075 -33.48065 -32.09811 -31.09513 -30.74371 -28.92365 -26.02284 -24.88641 -23.16790 -22.04178 -21.50861 -20.00450 -19.53953 -17.63637 -17.16519 -16.20244 -15.59225 -15.40547 -14.90772 -14.58099 -14.51749 -14.42233 -14.00280 -13.49324 -13.40923 -13.12067 -12.67170 -12.64465 -12.40889 -12.25112 -12.16299 -12.11360 -11.98223 -11.70096 -11.24796 -11.17950 -11.16486 -10.93676 -10.68291 -10.61801 -10.50419 -10.40132 -9.98095 -9.68212 -9.19778 -9.14841 -9.02461 -8.32946 -5.96784 -4.01440 2.60534 2.87357 3.08159 3.32909 3.39078 3.41532 3.55875 3.84800 4.25801 4.35599 4.46279 4.49162 4.75308 4.85003 4.93818 5.04233 5.14915 5.15339 5.19512 5.30540 5.38265 5.43892 5.54502 5.61508 5.69450 5.73985 5.78618 5.79770 5.85284 5.92848 5.98518 6.08794 6.17583 6.18254 6.31771 6.50271 6.84688 7.63801 7.72239 7.74439 7.84113 8.05716 8.36439 8.64665 9.06915 9.62249 11.14120 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.003472 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.363080 B = 8062.924498 C = 8583.194674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.281 3.719 3 C 0.209 3.791 4 N -0.421 5.421 5 N -0.734 5.734 6 C 0.510 3.490 7 O -0.520 6.520 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.405 0.595 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.024 0.976 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 -9.127 23.986 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.191 3.809 3 C -0.111 4.111 4 N -0.097 5.097 5 N -0.391 5.391 6 C 0.299 3.701 7 O -0.394 6.394 8 C -0.168 4.168 9 C -0.001 4.001 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.103 4.103 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.154 4.154 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.241 0.759 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.821 -6.654 23.724 24.653 hybrid contribution 0.523 -1.105 -0.934 1.538 sum 1.344 -7.758 22.789 24.111 Atomic orbital electron populations 1.22361 0.91469 1.04086 1.04627 1.17575 0.95244 0.81008 0.87089 1.29289 0.93554 0.95064 0.93189 1.81120 1.08530 1.12208 1.07805 1.46427 1.55838 1.32419 1.04371 1.21739 0.79306 0.84573 0.84443 1.90678 1.36501 1.25830 1.86354 1.21887 1.01547 1.00512 0.92891 1.18902 0.97168 0.95598 0.88394 1.21205 1.32007 1.12423 0.90974 0.92568 1.25030 0.95183 0.95019 0.99159 1.69998 1.36524 1.22732 1.23509 0.86589 0.79174 0.79367 0.82807 1.20644 1.21245 1.19875 1.21401 1.01324 0.95604 0.91991 1.21670 1.02013 0.98563 0.93414 1.21506 1.00593 0.95962 0.97380 1.21559 1.00902 0.95577 0.97820 1.21539 1.01151 0.98681 0.94264 1.21700 1.01424 0.93814 0.98472 0.91182 0.89256 0.90130 0.75880 0.90125 0.89856 0.95719 0.95898 0.92933 0.89681 0.90770 0.91839 0.91823 0.91896 0.92111 0.91811 0.91853 0.91649 0.90586 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 7.62 37.16 0.28 -1.60 16 2 C 0.28 3.27 0.49 -134.61 -0.07 3.20 16 3 C 0.21 3.26 11.25 -20.76 -0.23 3.02 16 4 N -0.42 -7.70 18.54 42.15 0.78 -6.92 16 5 N -0.73 -9.19 4.81 -50.22 -0.24 -9.43 16 6 C 0.51 9.20 7.24 -10.98 -0.08 9.12 16 7 O -0.52 -11.65 13.19 5.56 0.07 -11.57 16 8 C -0.13 -2.48 5.64 -27.88 -0.16 -2.64 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.08 -0.66 1.57 -90.62 -0.14 -0.80 16 19 C -0.12 -0.91 4.63 -26.73 -0.12 -1.03 16 20 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 21 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 22 C -0.12 -0.64 5.92 -26.71 -0.16 -0.80 16 23 C -0.12 -0.72 4.59 -26.71 -0.12 -0.84 16 24 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 25 H 0.09 1.36 6.17 -51.93 -0.32 1.04 16 26 H 0.08 0.74 6.34 -51.93 -0.33 0.41 16 27 H 0.41 3.66 7.65 -40.82 -0.31 3.35 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 35 H 0.06 0.59 7.09 -51.93 -0.37 0.22 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.47 6.34 -51.93 -0.33 0.14 16 43 H 0.07 0.41 7.18 -51.93 -0.37 0.04 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -35.05 339.76 -7.10 -42.14 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -6.90 Total: -2.45 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.65 Total: -6.76 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.28 Total: -43.05 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.05 -7.10 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558670355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.975 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds