Wall clock time and date at job start Tue Mar 31 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.47199 * 109.47575 * 2 1 4 4 N 2.60800 * 109.47400 * 0.02562 * 2 1 3 5 5 N 1.46504 * 109.46553 * 240.00228 * 2 1 3 6 6 C 1.34777 * 120.00071 * 60.00085 * 5 2 1 7 7 O 1.21281 * 119.99830 * 359.97438 * 6 5 2 8 8 C 1.50702 * 120.00208 * 179.97438 * 6 5 2 9 9 C 1.52997 * 109.47345 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47279 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00060 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00230 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46837 * 90.00307 * 14 12 10 16 16 H 1.48502 * 109.46878 * 209.99835 * 14 12 10 17 17 H 1.48496 * 109.47304 * 330.00042 * 14 12 10 18 18 C 1.52995 * 109.47324 * 120.00925 * 2 1 3 19 19 C 1.53002 * 109.46925 * 294.99201 * 18 2 1 20 20 C 1.52997 * 109.47415 * 180.02562 * 19 18 2 21 21 C 1.53006 * 109.47164 * 300.00027 * 20 19 18 22 22 C 1.52999 * 109.46626 * 59.99702 * 21 20 19 23 23 C 1.52996 * 109.47577 * 54.99175 * 18 2 1 24 24 H 1.09002 * 109.46499 * 299.99787 * 1 2 3 25 25 H 1.08992 * 109.47322 * 59.99132 * 1 2 3 26 26 H 1.09001 * 109.47319 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00242 * 239.99572 * 5 2 1 28 28 H 1.08998 * 109.46728 * 300.00029 * 8 6 5 29 29 H 1.09001 * 109.46826 * 59.99915 * 8 6 5 30 30 H 1.08998 * 109.47097 * 300.00476 * 9 8 6 31 31 H 1.09001 * 109.46992 * 59.99664 * 9 8 6 32 32 H 0.96993 * 119.99693 * 179.97438 * 13 12 10 33 33 H 1.08996 * 109.47575 * 174.99745 * 18 2 1 34 34 H 1.09000 * 109.46986 * 60.00086 * 19 18 2 35 35 H 1.09001 * 109.47601 * 300.00809 * 19 18 2 36 36 H 1.09001 * 109.46922 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47140 * 59.99976 * 20 19 18 38 38 H 1.08993 * 109.46955 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47050 * 300.00004 * 21 20 19 40 40 H 1.09000 * 109.47160 * 60.00369 * 22 21 20 41 41 H 1.09002 * 109.46719 * 180.02562 * 22 21 20 42 42 H 1.09000 * 109.47054 * 300.00355 * 23 18 2 43 43 H 1.09001 * 109.46997 * 60.00088 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0208 1.3878 0.0000 4 7 2.3995 2.4588 0.0011 5 7 2.0182 -0.6906 -1.1963 6 6 1.6926 -0.2301 -2.4203 7 8 0.9950 0.7558 -2.5315 8 6 2.1952 -0.9401 -3.6509 9 6 1.6856 -0.2185 -4.9001 10 6 2.1877 -0.9289 -6.1305 11 1 2.8087 -1.8070 -6.0316 12 6 1.8554 -0.4572 -7.3828 13 7 1.0997 0.6124 -7.5034 14 14 2.4784 -1.3374 -8.9081 15 1 1.5000 -2.3785 -9.3131 16 1 2.6442 -0.3578 -10.0118 17 1 3.7862 -1.9755 -8.6119 18 6 2.0401 -0.7214 1.2491 19 6 1.6355 0.0687 2.4953 20 6 2.1460 -0.6523 3.7444 21 6 1.5363 -2.0542 3.8091 22 6 1.9410 -2.8442 2.5629 23 6 1.4299 -2.1230 1.3135 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3634 -1.0277 0.0005 27 1 2.5759 -1.4793 -1.1074 28 1 3.2852 -0.9397 -3.6508 29 1 1.8322 -1.9679 -3.6510 30 1 0.5956 -0.2184 -4.9003 31 1 2.0489 0.8092 -4.8996 32 1 0.8662 0.9444 -8.3843 33 1 3.1263 -0.7997 1.2054 34 1 0.5492 0.1470 2.5390 35 1 2.0700 1.0673 2.4494 36 1 1.8573 -0.0896 4.6322 37 1 3.2323 -0.7302 3.7004 38 1 1.8997 -2.5676 4.6992 39 1 0.4500 -1.9762 3.8531 40 1 3.0273 -2.9221 2.5190 41 1 1.5063 -3.8427 2.6088 42 1 0.3436 -2.0447 1.3573 43 1 1.7182 -2.6859 0.4257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558670355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:40 Heat of formation + Delta-G solvation = -66.345131 kcal Electronic energy + Delta-G solvation = -21922.868158 eV Core-core repulsion = 18772.780059 eV Total energy + Delta-G solvation = -3150.088099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.67284 -39.73369 -37.60386 -36.08656 -35.52600 -33.44697 -32.40713 -31.54617 -29.75467 -27.78911 -26.04002 -24.02013 -23.34217 -22.46431 -21.23821 -20.28263 -18.88774 -18.78448 -17.74698 -16.82506 -16.44880 -16.34449 -16.17571 -15.19460 -15.10769 -15.03660 -14.82986 -14.56612 -14.31938 -14.24585 -13.91644 -13.49241 -13.25333 -13.18042 -13.10736 -13.05434 -12.83776 -12.79586 -12.57531 -12.46580 -11.88507 -11.84004 -11.74506 -11.61882 -11.28816 -11.21217 -11.10737 -10.90967 -10.59090 -10.56008 -10.37368 -8.17285 -6.31140 1.36117 1.43073 1.45531 1.56316 1.64351 1.67417 2.33023 2.46382 2.78248 3.16167 3.47958 3.73065 3.87652 3.99834 4.11878 4.29637 4.42822 4.46246 4.51837 4.57679 4.59173 4.62311 4.67725 4.73903 4.79924 4.84793 5.03512 5.10914 5.19102 5.24283 5.34560 5.35873 5.36837 5.41231 5.49432 5.51986 5.52471 5.65141 5.69887 5.86908 6.18529 6.40992 6.56921 6.88209 7.29623 7.39428 8.95342 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031370 B = 0.003472 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.363080 B = 8062.924498 C = 8583.194674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.279 3.721 3 C 0.224 3.776 4 N -0.477 5.477 5 N -0.707 5.707 6 C 0.513 3.487 7 O -0.572 6.572 8 C -0.118 4.118 9 C 0.042 3.958 10 C -0.541 4.541 11 H 0.079 0.921 12 C -0.009 4.009 13 N -0.939 5.939 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.290 1.290 17 H -0.254 1.254 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.115 4.115 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.108 0.892 27 H 0.427 0.573 28 H 0.102 0.898 29 H 0.116 0.884 30 H -0.014 1.014 31 H -0.026 1.026 32 H 0.262 0.738 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -12.678 25.199 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.189 3.811 3 C -0.096 4.096 4 N -0.153 5.153 5 N -0.364 5.364 6 C 0.302 3.698 7 O -0.450 6.450 8 C -0.158 4.158 9 C 0.004 3.996 10 C -0.579 4.579 11 H 0.097 0.903 12 C -0.206 4.206 13 N -0.580 5.580 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.216 1.216 17 H -0.178 1.178 18 C -0.092 4.092 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.267 0.733 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.004 0.996 31 H -0.007 1.007 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.915 -10.265 24.991 27.085 hybrid contribution 0.167 0.035 -1.240 1.252 sum 2.082 -10.230 23.751 25.944 Atomic orbital electron populations 1.22368 0.90916 1.05574 1.03492 1.18061 0.95650 0.79335 0.88034 1.30146 0.92159 0.95750 0.91497 1.81114 1.10483 1.14054 1.09688 1.46045 1.54859 1.32457 1.02995 1.21469 0.78752 0.83783 0.85793 1.90686 1.38958 1.28103 1.87246 1.21656 1.02652 1.01141 0.90360 1.18685 0.94746 0.93970 0.92199 1.21738 1.31719 1.12874 0.91530 0.90323 1.26153 0.95287 0.95756 1.03408 1.70187 1.38421 1.24956 1.24393 0.85331 0.79381 0.77965 0.77634 1.19487 1.21574 1.17805 1.21424 1.01876 0.96275 0.89648 1.21681 1.02324 0.97642 0.94103 1.21485 1.00631 0.96505 0.96502 1.21564 1.01023 0.94847 0.98328 1.21527 1.01434 0.98919 0.93447 1.21743 1.01638 0.92319 0.99580 0.89364 0.93364 0.87303 0.73258 0.87952 0.86567 0.99558 1.00708 0.92982 0.88836 0.90202 0.93999 0.91582 0.91872 0.91377 0.91557 0.91508 0.90633 0.90107 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 7.62 71.98 0.55 -3.01 16 2 C 0.28 6.13 0.49 1.80 0.00 6.13 16 3 C 0.22 7.05 11.25 89.44 1.01 8.06 16 4 N -0.48 -18.11 18.54 20.01 0.37 -17.74 16 5 N -0.71 -16.34 4.81 -431.20 -2.08 -18.41 16 6 C 0.51 18.39 7.24 87.66 0.63 19.02 16 7 O -0.57 -26.77 13.19 -3.03 -0.04 -26.81 16 8 C -0.12 -4.46 5.64 29.85 0.17 -4.29 16 9 C 0.04 2.28 4.26 29.84 0.13 2.41 16 10 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 11 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 12 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 13 N -0.94 -59.97 13.29 21.45 0.28 -59.68 16 14 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 18 C -0.07 -0.96 1.57 -10.80 -0.02 -0.98 16 19 C -0.12 -1.62 4.63 30.59 0.14 -1.48 16 20 C -0.11 -1.15 5.92 30.60 0.18 -0.97 16 21 C -0.12 -0.92 5.92 30.60 0.18 -0.73 16 22 C -0.12 -0.80 5.92 30.61 0.18 -0.62 16 23 C -0.12 -0.99 4.59 30.61 0.14 -0.85 16 24 H 0.09 1.56 6.57 -2.39 -0.02 1.54 16 25 H 0.05 1.50 6.17 -2.39 -0.01 1.48 16 26 H 0.11 1.71 6.34 -2.39 -0.02 1.69 16 27 H 0.43 6.17 7.65 -92.71 -0.71 5.46 16 28 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 30 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 31 H -0.03 -1.62 8.10 -2.39 -0.02 -1.64 16 32 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 0.98 6.57 -2.39 -0.02 0.97 16 35 H 0.04 0.76 7.09 -2.39 -0.02 0.74 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.08 0.66 6.34 -2.39 -0.02 0.64 16 43 H 0.08 0.56 7.18 -2.39 -0.02 0.55 16 Total: -1.00 -81.70 339.76 4.85 -76.85 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 0.29 Total: 7.12 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.99 Total: -7.48 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -1.42 Total: -95.83 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -81.70 4.85 -76.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558670355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.500 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds