Wall clock time and date at job start Tue Mar 31 2020 00:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 H 1.09001 * 109.46884 * 184.46540 * 3 2 1 5 5 C 1.50697 * 109.46909 * 304.46482 * 3 2 1 6 6 H 1.07996 * 119.99947 * 115.15549 * 5 3 2 7 7 C 1.37878 * 120.00127 * 295.14871 * 5 3 2 8 8 N 1.31516 * 119.99976 * 352.97294 * 7 5 3 9 9 Si 1.86800 * 119.99816 * 172.97246 * 7 5 3 10 10 H 1.48497 * 109.47089 * 270.00093 * 9 7 5 11 11 H 1.48495 * 109.47170 * 30.00395 * 9 7 5 12 12 H 1.48501 * 109.47001 * 150.00091 * 9 7 5 13 13 N 1.46891 * 109.47335 * 64.46883 * 3 2 1 14 14 C 1.46900 * 111.00466 * 85.31094 * 13 3 2 15 15 C 1.50696 * 109.47456 * 184.99154 * 14 13 3 16 16 C 1.38424 * 120.44298 * 269.72203 * 15 14 13 17 17 C 1.50697 * 120.75381 * 359.97438 * 16 15 14 18 18 C 1.38788 * 118.48516 * 179.73373 * 16 15 14 19 19 C 1.38084 * 119.28535 * 0.54334 * 18 16 15 20 20 C 1.50702 * 119.58165 * 179.70176 * 19 18 16 21 21 N 1.31929 * 120.83812 * 359.72210 * 19 18 16 22 22 C 1.32284 * 121.64692 * 0.02562 * 21 19 18 23 23 O 1.35672 * 119.68591 * 180.02562 * 22 21 19 24 24 C 1.42909 * 116.99907 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.46823 * 65.55626 * 1 2 3 26 26 H 1.09002 * 109.47046 * 185.55147 * 1 2 3 27 27 H 1.08993 * 109.47387 * 305.55201 * 1 2 3 28 28 H 1.09003 * 109.47295 * 239.99241 * 2 1 3 29 29 H 1.09002 * 109.46588 * 120.00084 * 2 1 3 30 30 H 0.96992 * 119.99654 * 356.31412 * 8 7 5 31 31 H 1.00897 * 111.00393 * 209.26424 * 13 3 2 32 32 H 1.09003 * 109.46824 * 304.99054 * 14 13 3 33 33 H 1.09004 * 109.47179 * 64.98670 * 14 13 3 34 34 H 1.09003 * 109.47061 * 90.00213 * 17 16 15 35 35 H 1.09008 * 109.47184 * 209.99754 * 17 16 15 36 36 H 1.08997 * 109.47913 * 329.99920 * 17 16 15 37 37 H 1.08000 * 120.35473 * 180.26061 * 18 16 15 38 38 H 1.09005 * 109.47197 * 270.01791 * 20 19 18 39 39 H 1.09003 * 109.47363 * 30.01614 * 20 19 18 40 40 H 1.09005 * 109.47368 * 150.01649 * 20 19 18 41 41 H 1.08994 * 109.47066 * 300.00057 * 24 23 22 42 42 H 1.08999 * 109.46859 * 60.00260 * 24 23 22 43 43 H 1.09005 * 109.46777 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0800 5 6 1.4494 2.1840 -1.1714 6 1 0.7753 3.0108 -1.0028 7 6 1.7696 1.8071 -2.4584 8 7 2.6937 0.8945 -2.6657 9 14 0.8910 2.5927 -3.9077 10 1 -0.3193 1.7997 -4.2417 11 1 0.4926 3.9785 -3.5530 12 1 1.8014 2.6242 -5.0805 13 7 1.6405 2.1031 1.2497 14 6 2.6096 1.8346 2.3204 15 6 2.1062 2.4234 3.6130 16 6 2.4356 3.7200 3.9684 17 6 3.3024 4.5677 3.0734 18 6 1.9452 4.2233 5.1652 19 6 1.1588 3.4178 5.9649 20 6 0.6284 3.9551 7.2691 21 7 0.8664 2.1836 5.6020 22 6 1.3107 1.6702 4.4666 23 8 0.9850 0.3963 4.1323 24 6 0.1631 -0.3258 5.0517 25 1 -0.3633 0.4253 -0.9356 26 1 -0.3633 -1.0229 0.0994 27 1 -0.3634 0.5975 0.8360 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1873 0.5254 -1.9167 31 1 1.5199 3.0953 1.1117 32 1 2.7344 0.7579 2.4359 33 1 3.5682 2.2860 2.0645 34 1 2.6734 5.1177 2.3733 35 1 3.8722 5.2716 3.6801 36 1 3.9886 3.9272 2.5193 37 1 2.1799 5.2324 5.4700 38 1 1.3413 3.7435 8.0662 39 1 0.4849 5.0325 7.1868 40 1 -0.3247 3.4781 7.4980 41 1 0.6698 -0.3960 6.0141 42 1 -0.7857 0.1957 5.1777 43 1 -0.0212 -1.3279 4.6644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569016852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:49 Heat of formation + Delta-G solvation = -19.189167 kcal Electronic energy + Delta-G solvation = -22399.238042 eV Core-core repulsion = 19251.194779 eV Total energy + Delta-G solvation = -3148.043263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67647 -37.90011 -36.67576 -34.58342 -32.48653 -31.73407 -30.56481 -28.73085 -27.52650 -26.97710 -25.45416 -23.62888 -23.28121 -22.09978 -20.48587 -19.20801 -17.71073 -17.20262 -16.74865 -15.86316 -15.21804 -14.47087 -14.32207 -14.13869 -13.99722 -13.75729 -13.58766 -13.25606 -13.17960 -12.80712 -12.46365 -12.40130 -12.27376 -12.04658 -11.72306 -11.66787 -11.57662 -11.13757 -10.89124 -10.81737 -10.75136 -10.11666 -10.06023 -9.88614 -9.63072 -9.43142 -9.25485 -8.48832 -8.30263 -8.09534 -7.28815 -6.32285 -4.02705 1.27025 1.42468 3.30912 3.45480 3.47275 3.63101 3.82803 4.26746 4.54111 4.69150 5.02586 5.12298 5.18031 5.36673 5.39324 5.40659 5.40725 5.42749 5.45816 5.53635 5.65035 5.67728 5.73949 5.82330 5.93560 6.03915 6.24880 6.28644 6.39144 6.54818 6.56602 6.66539 6.70513 7.05814 7.14862 7.36827 7.47907 7.53382 7.63854 7.93057 8.02953 8.15994 8.55740 8.63369 8.90745 9.67427 11.04572 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.004832 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.556459 B = 5793.317364 C = 6512.462124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C 0.205 3.795 4 H -0.009 1.009 5 C -0.592 4.592 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.669 5.669 14 C 0.108 3.892 15 C -0.143 4.143 16 C -0.006 4.006 17 C -0.120 4.120 18 C -0.214 4.214 19 C 0.156 3.844 20 C -0.100 4.100 21 N -0.549 5.549 22 C 0.344 3.656 23 O -0.290 6.290 24 C 0.042 3.958 25 H 0.054 0.946 26 H 0.014 0.986 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.271 0.729 31 H 0.331 0.669 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.328 4.676 17.250 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.142 4.142 3 C 0.098 3.902 4 H 0.008 0.992 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.299 5.299 14 C -0.022 4.022 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.176 4.176 18 C -0.234 4.234 19 C 0.020 3.980 20 C -0.157 4.157 21 N -0.274 5.274 22 C 0.164 3.836 23 O -0.196 6.196 24 C -0.053 4.053 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.320 3.433 16.066 16.592 hybrid contribution 1.146 0.962 1.136 1.879 sum -1.173 4.396 17.202 17.793 Atomic orbital electron populations 1.21388 0.96570 0.97372 1.01972 1.21446 0.96341 0.98165 0.98215 1.19231 0.92991 0.91845 0.86181 0.99165 1.21962 1.30947 1.18310 0.91818 0.92928 1.25660 0.96394 0.95969 1.00004 1.70751 1.21295 1.27072 1.35618 0.83582 0.75864 0.75467 0.75559 1.21427 1.21598 1.21254 1.60573 1.46254 1.15798 1.07305 1.20669 0.93283 1.00181 0.88064 1.19826 1.02249 0.93978 0.98523 1.20020 0.94483 0.92706 0.94164 1.20883 0.98891 0.99070 0.98770 1.21552 1.03896 1.01547 0.96432 1.20755 0.93127 0.88264 0.95871 1.20677 1.01717 1.00682 0.92642 1.67094 1.27360 1.15434 1.17526 1.19519 0.90167 0.85298 0.88569 1.86381 1.65880 1.21235 1.46091 1.22792 0.94195 0.95528 0.92814 0.92723 0.96679 0.93006 0.92601 0.95995 0.91795 0.85166 0.90568 0.95170 0.89985 0.91187 0.90449 0.85102 0.90640 0.90737 0.90727 0.92899 0.92582 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.43 37.16 0.35 -2.32 16 2 C -0.10 -2.50 5.51 -26.73 -0.15 -2.65 16 3 C 0.21 5.10 1.93 -68.87 -0.13 4.97 16 4 H -0.01 -0.25 7.22 -51.93 -0.37 -0.62 16 5 C -0.59 -16.04 7.13 -34.44 -0.25 -16.29 16 6 H 0.05 1.44 7.67 -52.49 -0.40 1.04 16 7 C 0.02 0.68 5.26 -17.82 -0.09 0.59 16 8 N -0.91 -26.85 12.95 55.43 0.72 -26.14 16 9 Si 1.07 25.02 29.91 -169.99 -5.08 19.93 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.67 -14.40 5.60 -109.23 -0.61 -15.01 16 14 C 0.11 2.03 5.01 -4.98 -0.02 2.01 16 15 C -0.14 -2.43 5.47 -104.32 -0.57 -3.00 16 16 C -0.01 -0.09 5.91 -104.35 -0.62 -0.70 16 17 C -0.12 -1.48 9.67 36.00 0.35 -1.13 16 18 C -0.21 -2.74 9.44 -39.43 -0.37 -3.11 16 19 C 0.16 2.08 6.78 -82.61 -0.56 1.52 16 20 C -0.10 -0.92 10.17 36.01 0.37 -0.55 16 21 N -0.55 -8.62 9.13 -9.55 -0.09 -8.71 16 22 C 0.34 5.95 7.47 -17.12 -0.13 5.82 16 23 O -0.29 -5.04 9.54 -18.72 -0.18 -5.22 16 24 C 0.04 0.56 10.38 101.05 1.05 1.61 16 25 H 0.05 1.35 7.31 -51.93 -0.38 0.97 16 26 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 1.19 7.59 -51.93 -0.39 0.80 16 28 H 0.06 1.47 6.35 -51.93 -0.33 1.14 16 29 H 0.02 0.50 7.33 -51.93 -0.38 0.12 16 30 H 0.27 7.99 6.03 -40.82 -0.25 7.74 16 31 H 0.33 7.10 8.29 -39.29 -0.33 6.78 16 32 H 0.08 1.53 6.71 -51.93 -0.35 1.18 16 33 H 0.03 0.55 6.06 -51.93 -0.31 0.24 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.69 8.10 -51.92 -0.42 0.27 16 36 H 0.08 1.02 6.08 -51.93 -0.32 0.71 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -30.78 345.79 -7.64 -38.42 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.83 Total: 4.76 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.78 Total: -13.25 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.02 Total: -49.85 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.18 Total: -5.22 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.78 -7.64 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569016852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.230 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds