Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 H 1.09001 * 109.46884 * 184.46540 * 3 2 1 5 5 C 1.50697 * 109.46909 * 304.46482 * 3 2 1 6 6 H 1.07996 * 119.99947 * 115.15549 * 5 3 2 7 7 C 1.37878 * 120.00127 * 295.14871 * 5 3 2 8 8 N 1.31516 * 119.99976 * 352.97294 * 7 5 3 9 9 Si 1.86800 * 119.99816 * 172.97246 * 7 5 3 10 10 H 1.48497 * 109.47089 * 270.00093 * 9 7 5 11 11 H 1.48495 * 109.47170 * 30.00395 * 9 7 5 12 12 H 1.48501 * 109.47001 * 150.00091 * 9 7 5 13 13 N 1.46891 * 109.47335 * 64.46883 * 3 2 1 14 14 C 1.46900 * 111.00466 * 85.31094 * 13 3 2 15 15 C 1.50696 * 109.47456 * 184.99154 * 14 13 3 16 16 C 1.38424 * 120.44298 * 269.72203 * 15 14 13 17 17 C 1.50697 * 120.75381 * 359.97438 * 16 15 14 18 18 C 1.38788 * 118.48516 * 179.73373 * 16 15 14 19 19 C 1.38084 * 119.28535 * 0.54334 * 18 16 15 20 20 C 1.50702 * 119.58165 * 179.70176 * 19 18 16 21 21 N 1.31929 * 120.83812 * 359.72210 * 19 18 16 22 22 C 1.32284 * 121.64692 * 0.02562 * 21 19 18 23 23 O 1.35672 * 119.68591 * 180.02562 * 22 21 19 24 24 C 1.42909 * 116.99907 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.46823 * 65.55626 * 1 2 3 26 26 H 1.09002 * 109.47046 * 185.55147 * 1 2 3 27 27 H 1.08993 * 109.47387 * 305.55201 * 1 2 3 28 28 H 1.09003 * 109.47295 * 239.99241 * 2 1 3 29 29 H 1.09002 * 109.46588 * 120.00084 * 2 1 3 30 30 H 0.96992 * 119.99654 * 356.31412 * 8 7 5 31 31 H 1.00897 * 111.00393 * 209.26424 * 13 3 2 32 32 H 1.09003 * 109.46824 * 304.99054 * 14 13 3 33 33 H 1.09004 * 109.47179 * 64.98670 * 14 13 3 34 34 H 1.09003 * 109.47061 * 90.00213 * 17 16 15 35 35 H 1.09008 * 109.47184 * 209.99754 * 17 16 15 36 36 H 1.08997 * 109.47913 * 329.99920 * 17 16 15 37 37 H 1.08000 * 120.35473 * 180.26061 * 18 16 15 38 38 H 1.09005 * 109.47197 * 270.01791 * 20 19 18 39 39 H 1.09003 * 109.47363 * 30.01614 * 20 19 18 40 40 H 1.09005 * 109.47368 * 150.01649 * 20 19 18 41 41 H 1.08994 * 109.47066 * 300.00057 * 24 23 22 42 42 H 1.08999 * 109.46859 * 60.00260 * 24 23 22 43 43 H 1.09005 * 109.46777 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 -0.0800 5 6 1.4494 2.1840 -1.1714 6 1 0.7753 3.0108 -1.0028 7 6 1.7696 1.8071 -2.4584 8 7 2.6937 0.8945 -2.6657 9 14 0.8910 2.5927 -3.9077 10 1 -0.3193 1.7997 -4.2417 11 1 0.4926 3.9785 -3.5530 12 1 1.8014 2.6242 -5.0805 13 7 1.6405 2.1031 1.2497 14 6 2.6096 1.8346 2.3204 15 6 2.1062 2.4234 3.6130 16 6 2.4356 3.7200 3.9684 17 6 3.3024 4.5677 3.0734 18 6 1.9452 4.2233 5.1652 19 6 1.1588 3.4178 5.9649 20 6 0.6284 3.9551 7.2691 21 7 0.8664 2.1836 5.6020 22 6 1.3107 1.6702 4.4666 23 8 0.9850 0.3963 4.1323 24 6 0.1631 -0.3258 5.0517 25 1 -0.3633 0.4253 -0.9356 26 1 -0.3633 -1.0229 0.0994 27 1 -0.3634 0.5975 0.8360 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.1873 0.5254 -1.9167 31 1 1.5199 3.0953 1.1117 32 1 2.7344 0.7579 2.4359 33 1 3.5682 2.2860 2.0645 34 1 2.6734 5.1177 2.3733 35 1 3.8722 5.2716 3.6801 36 1 3.9886 3.9272 2.5193 37 1 2.1799 5.2324 5.4700 38 1 1.3413 3.7435 8.0662 39 1 0.4849 5.0325 7.1868 40 1 -0.3247 3.4781 7.4980 41 1 0.6698 -0.3960 6.0141 42 1 -0.7857 0.1957 5.1777 43 1 -0.0212 -1.3279 4.6644 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569016852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -39.726718 kcal Electronic energy + Delta-G solvation = -22400.128617 eV Core-core repulsion = 19251.194779 eV Total energy + Delta-G solvation = -3148.933838 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82022 -39.06558 -38.46424 -36.00221 -34.10544 -33.04279 -32.29057 -29.96519 -28.63925 -28.16591 -27.12925 -25.48560 -24.86543 -23.30697 -21.67048 -21.14130 -19.06211 -18.84416 -18.07280 -17.05222 -16.56649 -16.17005 -15.88639 -15.61253 -15.28724 -15.19127 -15.04530 -14.60067 -14.34154 -14.03084 -13.90591 -13.64061 -13.49115 -13.22930 -13.12908 -13.07800 -12.92020 -12.70765 -12.61864 -12.30827 -11.94913 -11.93318 -11.86894 -11.77577 -11.59102 -10.63489 -10.59124 -10.43251 -10.31621 -9.30216 -9.05901 -8.54759 -6.25662 0.13815 0.30765 1.55335 1.62624 1.79785 2.20067 2.58580 2.70014 3.23981 3.24287 3.64099 3.72949 3.88777 4.01329 4.12169 4.39022 4.40505 4.41913 4.44067 4.48148 4.57392 4.60127 4.67290 4.69923 4.75735 4.78379 4.82161 4.83041 5.01572 5.05267 5.09553 5.21017 5.24464 5.38044 5.40770 5.52620 5.62592 5.68464 5.91121 6.11350 6.33447 6.50329 6.63505 6.83176 6.91348 7.52798 8.81932 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021826 B = 0.004832 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.556459 B = 5793.317364 C = 6512.462124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C 0.211 3.789 4 H -0.039 1.039 5 C -0.594 4.594 6 H 0.048 0.952 7 C -0.022 4.022 8 N -0.935 5.935 9 Si 1.111 2.889 10 H -0.278 1.278 11 H -0.271 1.271 12 H -0.287 1.287 13 N -0.665 5.665 14 C 0.119 3.881 15 C -0.173 4.173 16 C -0.007 4.007 17 C -0.118 4.118 18 C -0.208 4.208 19 C 0.151 3.849 20 C -0.096 4.096 21 N -0.560 5.560 22 C 0.325 3.675 23 O -0.318 6.318 24 C 0.041 3.959 25 H 0.035 0.965 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.331 0.669 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.169 0.831 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.232 6.547 18.890 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C 0.102 3.898 4 H -0.022 1.022 5 C -0.633 4.633 6 H 0.067 0.933 7 C -0.221 4.221 8 N -0.572 5.572 9 Si 0.934 3.066 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.010 4.010 15 C -0.176 4.176 16 C -0.015 4.015 17 C -0.174 4.174 18 C -0.228 4.228 19 C 0.014 3.986 20 C -0.153 4.153 21 N -0.286 5.286 22 C 0.146 3.854 23 O -0.225 6.225 24 C -0.054 4.054 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.186 0.814 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.229 5.306 17.740 18.796 hybrid contribution 1.441 0.416 0.782 1.691 sum -1.788 5.722 18.522 19.468 Atomic orbital electron populations 1.21244 0.95293 0.98707 1.00781 1.21334 0.97303 0.97568 0.97341 1.19049 0.91010 0.92418 0.87309 1.02177 1.22188 1.30304 1.18078 0.92682 0.93341 1.26969 0.96324 0.95794 1.02969 1.70867 1.22648 1.28624 1.35081 0.83006 0.75129 0.75750 0.72749 1.20405 1.19614 1.21283 1.60505 1.47157 1.15471 1.06355 1.20481 0.92892 0.99233 0.88423 1.19731 1.04378 0.95556 0.97940 1.20327 0.94224 0.91838 0.95108 1.20915 0.98554 0.99047 0.98849 1.21953 1.02676 1.02997 0.95188 1.21588 0.92258 0.87479 0.97226 1.20803 1.01782 1.02042 0.90719 1.67186 1.27728 1.16730 1.16949 1.19692 0.90813 0.85472 0.89377 1.86329 1.66665 1.21815 1.47661 1.22963 0.93652 0.95934 0.92852 0.94589 0.94302 0.93073 0.94991 0.95212 0.93165 0.85192 0.92435 0.94986 0.90004 0.87984 0.91986 0.81371 0.88922 0.88113 0.90900 0.92109 0.92738 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.75 9.43 71.98 0.68 -4.07 16 2 C -0.10 -4.81 5.51 30.60 0.17 -4.64 16 3 C 0.21 10.80 1.93 44.17 0.09 10.88 16 4 H -0.04 -2.21 7.22 -2.39 -0.02 -2.23 16 5 C -0.59 -32.67 7.13 25.60 0.18 -32.48 16 6 H 0.05 2.66 7.67 -2.91 -0.02 2.64 16 7 C -0.02 -1.21 5.26 84.65 0.45 -0.77 16 8 N -0.93 -56.37 12.95 21.45 0.28 -56.09 16 9 Si 1.11 50.17 29.91 68.60 2.05 52.23 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.66 -29.27 5.60 -499.49 -2.80 -32.07 16 14 C 0.12 4.64 5.01 85.56 0.43 5.07 16 15 C -0.17 -5.90 5.47 -19.67 -0.11 -6.01 16 16 C -0.01 -0.20 5.91 -19.69 -0.12 -0.31 16 17 C -0.12 -2.71 9.67 71.23 0.69 -2.02 16 18 C -0.21 -4.68 9.44 22.36 0.21 -4.46 16 19 C 0.15 3.63 6.78 42.51 0.29 3.92 16 20 C -0.10 -1.42 10.17 71.24 0.72 -0.70 16 21 N -0.56 -16.95 9.13 -296.98 -2.71 -19.66 16 22 C 0.33 11.24 7.47 84.78 0.63 11.87 16 23 O -0.32 -11.22 9.54 -89.89 -0.86 -12.07 16 24 C 0.04 1.06 10.38 113.37 1.18 2.24 16 25 H 0.03 1.76 7.31 -2.39 -0.02 1.74 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.34 7.59 -2.39 -0.02 2.32 16 28 H 0.03 1.72 6.35 -2.39 -0.02 1.71 16 29 H 0.03 1.40 7.33 -2.39 -0.02 1.38 16 30 H 0.26 15.85 6.03 -92.71 -0.56 15.30 16 31 H 0.33 14.41 8.29 -89.70 -0.74 13.67 16 32 H 0.06 2.42 6.71 -2.39 -0.02 2.40 16 33 H 0.03 1.22 6.06 -2.39 -0.01 1.21 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.68 8.10 -2.38 -0.02 1.66 16 36 H 0.06 1.62 6.08 -2.39 -0.01 1.61 16 37 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 42 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 43 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -67.71 345.79 1.92 -65.79 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.47 Total: 23.38 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 5.49 Total: -21.50 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.23 Total: -107.82 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.86 Total: -12.07 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.23 kcal Total: -67.71 1.92 -65.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569016852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.066 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds