Wall clock time and date at job start Tue Mar 31 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47246 * 2 1 4 4 N 1.46898 * 109.47475 * 120.00030 * 2 1 3 5 5 C 1.46909 * 110.99927 * 148.31994 * 4 2 1 6 6 C 1.53002 * 109.47008 * 284.92188 * 5 4 2 7 7 O 1.42892 * 109.47147 * 64.50239 * 6 5 4 8 8 C 1.42908 * 114.00081 * 184.77650 * 7 6 5 9 9 C 1.50700 * 109.47333 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99676 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99932 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00074 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47103 * 60.00100 * 13 11 9 15 15 H 1.48498 * 109.47547 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47015 * 300.00282 * 13 11 9 17 17 C 1.46897 * 111.00272 * 272.27788 * 4 2 1 18 18 C 1.50697 * 109.47179 * 77.46909 * 17 4 2 19 19 C 1.38228 * 119.61559 * 92.81247 * 18 17 4 20 20 C 1.38632 * 119.15957 * 179.74735 * 19 18 17 21 21 C 1.38681 * 118.41855 * 0.47025 * 20 19 18 22 22 C 1.38177 * 119.16222 * 359.51251 * 21 20 19 23 23 N 1.31850 * 119.61764 * 272.78917 * 18 17 4 24 24 H 1.09007 * 109.46709 * 307.63758 * 1 2 3 25 25 H 1.08997 * 109.47521 * 67.64112 * 1 2 3 26 26 H 1.09001 * 109.46937 * 187.64530 * 1 2 3 27 27 H 1.09005 * 109.46846 * 240.00518 * 2 1 3 28 28 H 1.08995 * 109.46971 * 172.49218 * 3 2 1 29 29 H 1.08999 * 109.47385 * 292.49619 * 3 2 1 30 30 H 1.09005 * 109.46657 * 52.49246 * 3 2 1 31 31 H 1.09000 * 109.46775 * 44.91805 * 5 4 2 32 32 H 1.09001 * 109.46810 * 164.92104 * 5 4 2 33 33 H 1.09001 * 109.46555 * 184.50131 * 6 5 4 34 34 H 1.08996 * 109.46810 * 304.49930 * 6 5 4 35 35 H 1.09001 * 109.47156 * 300.00506 * 8 7 6 36 36 H 1.09004 * 109.46734 * 59.99663 * 8 7 6 37 37 H 0.96999 * 119.99623 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.46917 * 317.46816 * 17 4 2 39 39 H 1.09003 * 109.46693 * 197.46740 * 17 4 2 40 40 H 1.07994 * 120.42456 * 359.95074 * 19 18 17 41 41 H 1.07994 * 120.79184 * 180.22952 * 20 19 18 42 42 H 1.07997 * 120.41705 * 179.77714 * 21 20 19 43 43 H 1.08004 * 119.61965 * 180.25663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.2956 -1.3699 0.9321 6 6 3.0395 -2.6325 0.1068 7 8 2.5184 -2.2676 -1.1727 8 6 2.1422 -3.3808 -1.9861 9 6 1.6087 -2.8822 -3.3044 10 1 1.5621 -1.8215 -3.5015 11 6 1.1802 -3.7804 -4.2587 12 7 1.2366 -5.0722 -4.0183 13 14 0.5196 -3.1625 -5.8930 14 1 1.5714 -2.3765 -6.5867 15 1 0.1285 -4.3192 -6.7381 16 1 -0.6656 -2.3004 -5.6537 17 6 2.1438 0.2369 2.3301 18 6 0.7797 0.5066 2.9109 19 6 0.3205 -0.2640 3.9627 20 6 -0.9337 -0.0043 4.4931 21 6 -1.6866 1.0189 3.9368 22 6 -1.1613 1.7470 2.8866 23 7 0.0381 1.4750 2.4102 24 1 -0.3633 0.6276 0.8139 25 1 -0.3634 0.3909 -0.9503 26 1 -0.3633 -1.0185 0.1367 27 1 1.8933 -0.5138 -0.8901 28 1 3.1217 1.4454 0.1343 29 1 1.7904 1.9162 -0.9494 30 1 1.5711 1.9936 0.8153 31 1 3.9531 -0.7004 0.3775 32 1 3.7670 -1.6424 1.8763 33 1 3.9747 -3.1771 -0.0236 34 1 2.3196 -3.2656 0.6253 35 1 3.0125 -4.0132 -2.1616 36 1 1.3703 -3.9582 -1.4771 37 1 0.9347 -5.7040 -4.6895 38 1 2.5831 1.1728 1.9847 39 1 2.7834 -0.2043 3.0946 40 1 0.9324 -1.0560 4.3682 41 1 -1.3169 -0.5875 5.3173 42 1 -2.6694 1.2464 4.3225 43 1 -1.7397 2.5482 2.4505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590154610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:26 Heat of formation + Delta-G solvation = -12.275043 kcal Electronic energy + Delta-G solvation = -22325.783506 eV Core-core repulsion = 19178.040062 eV Total energy + Delta-G solvation = -3147.743444 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35922 -39.55356 -37.94542 -34.94440 -33.57004 -33.22672 -32.66924 -30.16612 -28.78583 -27.98355 -26.42201 -24.54472 -24.31066 -23.21852 -22.80019 -20.39864 -18.57807 -17.78087 -17.51715 -17.42127 -16.93671 -16.47604 -16.32840 -16.06636 -15.77590 -15.27485 -14.79643 -14.62714 -14.54016 -13.98333 -13.84601 -13.65752 -13.47548 -13.14606 -13.04787 -12.83456 -12.68847 -12.51412 -12.31112 -12.17453 -12.13477 -12.01515 -11.85482 -11.45045 -11.07645 -10.81629 -10.49555 -10.18366 -10.08458 -9.79643 -9.11768 -8.31146 -6.42681 0.28197 0.46488 1.37996 1.42701 1.50892 2.34179 2.73873 3.02672 3.22015 3.25489 3.52507 3.86360 4.11076 4.15061 4.24112 4.30486 4.34769 4.36327 4.43977 4.49524 4.58707 4.63907 4.73538 4.78062 4.84926 4.88002 4.92633 4.94353 4.98417 5.01779 5.17741 5.21712 5.28471 5.37338 5.38218 5.52258 5.55518 5.60335 5.94063 5.98998 6.25184 6.32855 6.56879 6.86286 7.16203 7.29112 8.81105 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.004219 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.770738 B = 6635.544671 C = 7012.248710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 C -0.170 4.170 4 N -0.533 5.533 5 C 0.068 3.932 6 C 0.057 3.943 7 O -0.396 6.396 8 C 0.212 3.788 9 C -0.542 4.542 10 H 0.059 0.941 11 C 0.008 3.992 12 N -0.931 5.931 13 Si 0.978 3.022 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.268 1.268 17 C 0.087 3.913 18 C 0.124 3.876 19 C -0.164 4.164 20 C -0.082 4.082 21 C -0.175 4.175 22 C 0.077 3.923 23 N -0.492 5.492 24 H 0.092 0.908 25 H 0.035 0.965 26 H 0.020 0.980 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.050 0.950 34 H 0.037 0.963 35 H -0.017 1.017 36 H -0.022 1.022 37 H 0.270 0.730 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.146 0.854 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 12.695 18.793 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 C -0.229 4.229 4 N -0.258 5.258 5 C -0.059 4.059 6 C -0.020 4.020 7 O -0.316 6.316 8 C 0.137 3.863 9 C -0.580 4.580 10 H 0.077 0.923 11 C -0.191 4.191 12 N -0.570 5.570 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.193 1.193 17 C -0.040 4.040 18 C -0.013 4.013 19 C -0.184 4.184 20 C -0.108 4.108 21 C -0.195 4.195 22 C -0.080 4.080 23 N -0.203 5.203 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.135 0.865 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.001 0.999 36 H -0.004 1.004 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.163 0.837 41 H 0.175 0.825 42 H 0.176 0.824 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.712 12.832 18.098 22.252 hybrid contribution -0.141 -0.538 -0.526 0.766 sum -1.852 12.294 17.572 21.526 Atomic orbital electron populations 1.22077 0.95934 1.00197 1.01701 1.21834 0.95356 0.93211 0.93166 1.22385 1.00310 0.97415 1.02765 1.62042 1.28013 1.30170 1.05571 1.22199 0.90159 0.93885 0.99667 1.22593 0.97071 0.97528 0.84788 1.87772 1.83206 1.33300 1.27353 1.19737 0.92141 0.84980 0.89397 1.21318 1.42862 0.93873 0.99931 0.92265 1.25911 0.95510 0.94743 1.02915 1.70068 1.47916 1.02256 1.36795 0.85309 0.78988 0.78011 0.77574 1.18935 1.19898 1.19293 1.21280 0.92191 0.97017 0.93556 1.21187 0.96161 0.91325 0.92603 1.22151 0.97933 1.00451 0.97863 1.21945 0.93430 0.96316 0.99134 1.22419 1.02201 0.96997 0.97892 1.23144 0.91700 0.99056 0.94069 1.67295 1.07154 1.17781 1.28114 0.89029 0.94616 0.96050 0.90264 0.93070 0.93404 0.89371 0.94051 0.86499 0.93209 0.94503 0.99882 1.00425 0.92139 0.91473 0.87553 0.83658 0.82481 0.82368 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.00 71.98 0.65 -4.62 16 2 C 0.07 2.58 2.50 44.92 0.11 2.69 16 3 C -0.17 -5.12 7.77 71.98 0.56 -4.56 16 4 N -0.53 -16.37 4.25 -875.50 -3.72 -20.09 16 5 C 0.07 1.99 5.52 86.30 0.48 2.47 16 6 C 0.06 2.19 6.27 71.98 0.45 2.64 16 7 O -0.40 -19.60 7.26 -148.98 -1.08 -20.69 16 8 C 0.21 12.29 5.69 71.24 0.41 12.70 16 9 C -0.54 -33.07 9.43 25.60 0.24 -32.83 16 10 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 11 C 0.01 0.45 5.46 84.65 0.46 0.91 16 12 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 13 Si 0.98 45.57 29.54 68.60 2.03 47.60 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 C 0.09 2.07 4.89 85.56 0.42 2.48 16 18 C 0.12 3.01 5.36 42.55 0.23 3.24 16 19 C -0.16 -3.32 9.73 22.36 0.22 -3.10 16 20 C -0.08 -1.38 10.18 22.47 0.23 -1.15 16 21 C -0.18 -2.86 10.11 22.36 0.23 -2.63 16 22 C 0.08 1.54 10.83 84.67 0.92 2.46 16 23 N -0.49 -12.34 5.70 -183.89 -1.05 -13.39 16 24 H 0.09 3.02 3.77 -2.38 -0.01 3.01 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 3.52 4.83 -2.38 -0.01 3.51 16 28 H 0.05 1.42 7.40 -2.39 -0.02 1.40 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 2.49 4.98 -2.38 -0.01 2.48 16 31 H 0.04 1.22 7.68 -2.39 -0.02 1.20 16 32 H 0.12 2.44 7.59 -2.39 -0.02 2.43 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 36 H -0.02 -1.36 8.14 -2.38 -0.02 -1.38 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.07 1.60 5.09 -2.39 -0.01 1.59 16 39 H 0.11 1.90 7.49 -2.39 -0.02 1.88 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.59 338.28 3.03 -68.56 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.98 Total: 14.31 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 5.59 Total: -19.31 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -4.48 Total: -90.47 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.08 Total: -20.69 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.59 3.03 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590154610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.281 kcal (2) G-P(sol) polarization free energy of solvation -71.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds