Wall clock time and date at job start Tue Mar 31 2020 00:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47167 * 2 1 4 4 C 1.52998 * 109.46619 * 240.00534 * 2 1 3 5 5 O 1.42904 * 109.47372 * 297.15201 * 4 2 1 6 6 C 1.52996 * 109.46952 * 120.00438 * 2 1 3 7 7 H 1.08999 * 109.47253 * 60.79585 * 6 2 1 8 8 N 1.46893 * 109.47322 * 300.78627 * 6 2 1 9 9 C 1.46905 * 110.99665 * 110.35698 * 8 6 2 10 10 C 1.53005 * 109.46845 * 182.07279 * 9 8 6 11 11 C 1.50703 * 109.46829 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00357 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99858 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00091 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47096 * 59.99629 * 15 13 11 17 17 H 1.48502 * 109.47242 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46991 * 299.99910 * 15 13 11 19 19 C 1.50703 * 109.46899 * 180.78668 * 6 2 1 20 20 C 1.38674 * 120.42147 * 259.72686 * 19 6 2 21 21 C 1.38629 * 118.41964 * 180.27809 * 20 19 6 22 22 C 1.38222 * 119.16129 * 0.02562 * 21 20 19 23 23 N 1.31853 * 120.76723 * 359.97438 * 22 21 20 24 24 C 1.31888 * 121.72106 * 0.02562 * 23 22 21 25 25 H 1.08995 * 109.46797 * 302.48191 * 1 2 3 26 26 H 1.08994 * 109.46912 * 62.48036 * 1 2 3 27 27 H 1.08994 * 109.47340 * 182.48363 * 1 2 3 28 28 H 1.08990 * 109.46748 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47422 * 300.00637 * 3 2 1 30 30 H 1.09000 * 109.46857 * 60.00413 * 3 2 1 31 31 H 1.08995 * 109.47465 * 57.15464 * 4 2 1 32 32 H 1.09002 * 109.46907 * 177.15803 * 4 2 1 33 33 H 0.96691 * 114.00066 * 184.94466 * 5 4 2 34 34 H 1.00898 * 111.00116 * 346.40989 * 8 6 2 35 35 H 1.08999 * 109.47277 * 302.07670 * 9 8 6 36 36 H 1.09000 * 109.46931 * 62.08083 * 9 8 6 37 37 H 1.08999 * 109.47502 * 300.00253 * 10 9 8 38 38 H 1.09000 * 109.46700 * 60.00662 * 10 9 8 39 39 H 0.96999 * 120.00206 * 180.02562 * 14 13 11 40 40 H 1.07994 * 120.78827 * 0.26597 * 20 19 6 41 41 H 1.08003 * 120.41662 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.61788 * 180.02562 * 22 21 20 43 43 H 1.08003 * 119.61377 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 1.6190 -2.0864 -1.2165 6 6 2.0400 -0.7213 1.2492 7 1 1.6884 -1.7530 1.2420 8 7 1.5349 -0.0401 2.4485 9 6 0.5391 -0.8668 3.1435 10 6 -0.0004 -0.1044 4.3554 11 6 -1.0224 -0.9523 5.0679 12 1 -1.2628 -1.9366 4.6941 13 6 -1.6506 -0.4714 6.1972 14 7 -1.3583 0.7274 6.6521 15 14 -2.9169 -1.5226 7.0808 16 1 -2.2819 -2.7860 7.5341 17 1 -3.4416 -0.7821 8.2563 18 1 -4.0344 -1.8350 6.1541 19 6 3.5469 -0.7045 1.2589 20 6 4.2643 -1.8203 0.8547 21 6 5.6490 -1.7613 0.8858 22 6 6.2642 -0.6007 1.3162 23 7 5.5498 0.4414 1.6934 24 6 4.2312 0.4209 1.6769 25 1 -0.3633 0.5519 0.8669 26 1 -0.3633 0.4748 -0.9113 27 1 -0.3634 -1.0266 0.0445 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6356 -0.2376 -2.1385 32 1 3.1288 -0.6773 -1.2752 33 1 1.9698 -2.6236 -1.9399 34 1 1.1549 0.8655 2.2170 35 1 -0.2814 -1.0958 2.4635 36 1 1.0052 -1.7944 3.4759 37 1 0.8201 0.1246 5.0354 38 1 -0.4665 0.8231 4.0230 39 1 -1.8000 1.0657 7.4467 40 1 3.7563 -2.7139 0.5237 41 1 6.2395 -2.6117 0.5784 42 1 7.3425 -0.5465 1.3430 43 1 3.6799 1.2939 1.9937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590600270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:23 Heat of formation + Delta-G solvation = -26.662141 kcal Electronic energy + Delta-G solvation = -22420.344665 eV Core-core repulsion = 19271.977350 eV Total energy + Delta-G solvation = -3148.367315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.56727 -38.57371 -36.24523 -34.04919 -32.62147 -32.30048 -31.28848 -28.91015 -27.25032 -26.44689 -25.40105 -23.62822 -23.14260 -21.81345 -20.57873 -18.79433 -17.49909 -16.94022 -16.37814 -16.10110 -16.00060 -15.21962 -14.85539 -14.42023 -14.14005 -13.78923 -13.65494 -13.41328 -13.04615 -12.88440 -12.73983 -12.52025 -12.24324 -12.00477 -11.98201 -11.61326 -11.14056 -10.95167 -10.90277 -10.77653 -10.74567 -10.47698 -10.12781 -9.98149 -9.64067 -9.39820 -9.25019 -9.15429 -8.68986 -8.33460 -7.82254 -5.97695 -4.00097 1.27562 1.42290 3.34923 3.39244 3.41698 3.92521 4.10173 4.42168 4.54743 4.62559 4.69457 4.82654 4.96517 5.01316 5.12869 5.24084 5.30532 5.38309 5.39341 5.41755 5.47810 5.64680 5.65963 5.77895 5.93284 5.93641 6.01236 6.07578 6.20648 6.21947 6.38205 6.41540 6.47849 6.51720 6.85814 7.00291 7.46319 7.49295 7.73281 7.83918 7.95947 8.09517 8.14956 8.45569 9.06815 9.63542 11.13678 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018522 B = 0.004480 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.326257 B = 6249.136212 C = 6872.330437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 C -0.151 4.151 4 C 0.089 3.911 5 O -0.565 6.565 6 C 0.139 3.861 7 H 0.086 0.914 8 N -0.685 5.685 9 C 0.067 3.933 10 C 0.026 3.974 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.104 4.104 20 C -0.075 4.075 21 C -0.181 4.181 22 C 0.083 3.917 23 N -0.490 5.490 24 C 0.124 3.876 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.374 0.626 34 H 0.338 0.662 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.013 0.987 39 H 0.261 0.739 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.148 0.852 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 -2.675 -18.385 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.208 4.208 4 C 0.011 3.989 5 O -0.370 6.370 6 C 0.027 3.973 7 H 0.104 0.896 8 N -0.317 5.317 9 C -0.061 4.061 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.107 4.107 20 C -0.102 4.102 21 C -0.201 4.201 22 C -0.074 4.074 23 N -0.199 5.199 24 C -0.033 4.033 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.220 0.780 34 H 0.159 0.841 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.459 -1.772 -16.994 20.573 hybrid contribution -1.555 -1.487 -0.800 2.296 sum 9.904 -3.259 -17.794 20.624 Atomic orbital electron populations 1.21860 0.93283 1.02864 1.01835 1.21075 0.96779 0.95392 0.94613 1.22026 1.01644 0.94579 1.02598 1.22190 0.97510 0.82293 0.96904 1.86517 1.75632 1.21231 1.53608 1.20363 0.89335 0.99087 0.88478 0.89596 1.60683 1.41810 1.06472 1.22698 1.22253 0.90978 0.96553 0.96295 1.19065 0.95653 0.95067 0.91389 1.21127 1.22343 1.01914 1.10601 0.92850 1.24986 0.97043 0.95036 0.97199 1.69958 1.42828 1.16830 1.23629 0.86664 0.81760 0.80449 0.79147 1.20253 1.21286 1.20308 1.20949 0.97077 0.94467 0.98199 1.21492 0.93808 0.98119 0.96751 1.22034 0.95321 0.99686 1.03020 1.22660 1.00021 0.89133 0.95540 1.67737 1.08196 1.29632 1.14330 1.22696 0.89192 0.97927 0.93475 0.91917 0.92799 0.91688 0.91857 0.92412 0.90999 0.93908 0.93758 0.77971 0.84112 0.96078 0.92521 0.95718 0.96877 0.92960 0.85174 0.85429 0.83464 0.82482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.31 37.16 0.27 -1.56 16 2 C -0.08 -0.92 0.37 -154.51 -0.06 -0.98 16 3 C -0.15 -1.65 7.19 37.16 0.27 -1.38 16 4 C 0.09 0.90 5.46 37.16 0.20 1.11 16 5 O -0.57 -5.74 12.34 -35.23 -0.43 -6.17 16 6 C 0.14 1.99 1.62 -68.87 -0.11 1.88 16 7 H 0.09 1.37 6.90 -51.93 -0.36 1.01 16 8 N -0.68 -11.79 5.29 -107.95 -0.57 -12.36 16 9 C 0.07 1.40 5.00 -3.82 -0.02 1.38 16 10 C 0.03 0.67 5.21 -27.88 -0.15 0.52 16 11 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.10 -1.43 3.80 -104.48 -0.40 -1.83 16 20 C -0.08 -0.92 9.00 -39.28 -0.35 -1.27 16 21 C -0.18 -1.98 10.11 -39.44 -0.40 -2.38 16 22 C 0.08 1.01 11.18 -17.55 -0.20 0.81 16 23 N -0.49 -7.19 10.36 -13.25 -0.14 -7.33 16 24 C 0.12 1.81 8.28 -17.55 -0.15 1.66 16 25 H 0.06 0.90 6.63 -51.93 -0.34 0.56 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 28 H 0.06 0.70 5.61 -51.93 -0.29 0.41 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.82 6.41 -51.93 -0.33 0.49 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.37 2.13 9.12 45.56 0.42 2.54 16 34 H 0.34 5.58 5.32 -39.29 -0.21 5.37 16 35 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.16 2.29 6.91 -52.48 -0.36 1.93 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -32.15 339.09 -7.78 -39.92 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.97 Total: 5.89 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.49 Total: -15.59 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.03 Total: -45.99 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.43 Total: -6.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.15 -7.78 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590600270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.261 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds