Wall clock time and date at job start Tue Mar 31 2020 00:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52995 * 109.47373 * 119.99989 * 2 1 3 5 5 O 1.42897 * 109.47513 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47405 * 240.00175 * 2 1 3 7 7 H 1.09004 * 109.46585 * 297.77703 * 6 2 1 8 8 N 1.46902 * 109.47199 * 57.77541 * 6 2 1 9 9 C 1.46905 * 111.00141 * 201.93704 * 8 6 2 10 10 C 1.52998 * 109.47110 * 176.68606 * 9 8 6 11 11 C 1.50697 * 109.47070 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00295 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47303 * 89.99606 * 15 13 11 17 17 H 1.48499 * 109.47393 * 209.99873 * 15 13 11 18 18 H 1.48505 * 109.46834 * 330.00117 * 15 13 11 19 19 C 1.50699 * 109.47508 * 177.77795 * 6 2 1 20 20 C 1.38674 * 120.41788 * 99.99648 * 19 6 2 21 21 C 1.38628 * 118.41654 * 180.02562 * 20 19 6 22 22 C 1.38224 * 119.16113 * 0.02562 * 21 20 19 23 23 N 1.31846 * 120.76801 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72410 * 359.70906 * 23 22 21 25 25 H 1.09003 * 109.47199 * 293.24748 * 1 2 3 26 26 H 1.09001 * 109.47450 * 53.25232 * 1 2 3 27 27 H 1.08996 * 109.47186 * 173.25381 * 1 2 3 28 28 H 1.09001 * 109.46929 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46791 * 300.00050 * 3 2 1 30 30 H 1.08999 * 109.47048 * 60.00038 * 3 2 1 31 31 H 1.08999 * 109.47074 * 300.00154 * 4 2 1 32 32 H 1.08999 * 109.47310 * 60.00188 * 4 2 1 33 33 H 0.96699 * 114.00249 * 179.97438 * 5 4 2 34 34 H 1.00905 * 110.99518 * 325.88448 * 8 6 2 35 35 H 1.09004 * 109.46455 * 296.67802 * 9 8 6 36 36 H 1.08996 * 109.47142 * 56.67581 * 9 8 6 37 37 H 1.09004 * 109.46806 * 299.98981 * 10 9 8 38 38 H 1.08995 * 109.47257 * 59.99210 * 10 9 8 39 39 H 0.96997 * 120.00203 * 180.02562 * 14 13 11 40 40 H 1.07993 * 120.79157 * 359.97438 * 20 19 6 41 41 H 1.08001 * 120.41785 * 180.02562 * 21 20 19 42 42 H 1.08007 * 119.61457 * 179.97438 * 22 21 20 43 43 H 1.08007 * 119.61873 * 180.31162 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4689 -0.7207 1.2495 6 6 2.0400 -0.7212 -1.2492 7 1 1.7095 -1.7598 -1.2295 8 7 1.5070 -0.0604 -2.4481 9 6 1.5203 -0.9708 -3.6010 10 6 0.8835 -0.2765 -4.8065 11 6 0.8978 -1.2102 -5.9893 12 1 1.3194 -2.1997 -5.8911 13 6 0.3728 -0.8013 -7.1967 14 7 -0.1410 0.4035 -7.3162 15 14 0.3911 -1.9583 -8.6631 16 1 -0.8574 -2.7622 -8.6751 17 1 0.4826 -1.1675 -9.9167 18 1 1.5628 -2.8653 -8.5634 19 6 3.5460 -0.6737 -1.2771 20 6 4.2907 -1.7692 -0.8670 21 6 5.6735 -1.6801 -0.9092 22 6 6.2597 -0.5104 -1.3550 23 7 5.5198 0.5117 -1.7374 24 6 4.2021 0.4603 -1.7165 25 1 -0.3634 0.4056 0.9442 26 1 -0.3634 0.6148 -0.8234 27 1 -0.3633 -1.0205 -0.1207 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -0.2074 2.1392 32 1 1.6767 -1.7489 1.2492 33 1 3.8623 -1.1620 2.0148 34 1 0.5785 0.2977 -2.2809 35 1 2.5493 -1.2406 -3.8388 36 1 0.9552 -1.8710 -3.3596 37 1 -0.1455 -0.0067 -4.5686 38 1 1.4487 0.6237 -5.0477 39 1 -0.5107 0.6910 -8.1656 40 1 3.8051 -2.6700 -0.5221 41 1 6.2850 -2.5141 -0.5977 42 1 7.3364 -0.4328 -1.3906 43 1 3.6293 1.3160 -2.0421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590600271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:27 Heat of formation + Delta-G solvation = -21.020334 kcal Electronic energy + Delta-G solvation = -22623.260986 eV Core-core repulsion = 19475.138318 eV Total energy + Delta-G solvation = -3148.122668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37039 -38.32270 -36.19202 -34.15420 -32.66793 -32.04973 -31.00648 -28.90095 -27.19136 -26.40011 -25.32975 -23.56464 -22.97087 -21.67393 -20.50666 -18.76635 -17.46400 -16.70817 -16.34691 -16.11327 -15.76960 -14.92329 -14.80896 -14.40463 -14.29984 -13.85652 -13.35673 -13.20049 -13.01247 -12.78082 -12.65923 -12.36124 -12.18193 -12.16168 -11.92611 -11.56899 -11.07688 -10.97924 -10.89354 -10.76449 -10.51613 -10.47926 -10.16237 -10.01525 -9.38114 -9.19021 -9.11323 -9.04543 -8.38800 -8.33190 -7.86688 -5.98538 -4.00828 1.57436 1.75706 3.32777 3.39227 3.42914 4.12207 4.23500 4.40475 4.55193 4.70776 4.86518 4.94327 5.02310 5.15568 5.30586 5.35235 5.36135 5.37666 5.41708 5.49930 5.57087 5.64395 5.73408 5.90347 5.98687 6.00743 6.11142 6.19097 6.29395 6.36074 6.41149 6.48808 6.52904 6.70424 6.98643 7.15566 7.47173 7.52762 7.72266 7.83366 7.94915 8.08728 8.43994 8.44992 9.06046 9.62942 11.12872 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.004772 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.566379 B = 5865.643638 C = 6678.673789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.138 4.138 4 C 0.086 3.914 5 O -0.552 6.552 6 C 0.141 3.859 7 H 0.043 0.957 8 N -0.685 5.685 9 C 0.069 3.931 10 C 0.026 3.974 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.086 4.086 20 C -0.043 4.043 21 C -0.186 4.186 22 C 0.084 3.916 23 N -0.496 5.496 24 C 0.131 3.869 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.367 0.633 34 H 0.340 0.660 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.026 0.974 39 H 0.260 0.740 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -2.984 20.149 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.195 4.195 4 C 0.008 3.992 5 O -0.357 6.357 6 C 0.030 3.970 7 H 0.061 0.939 8 N -0.318 5.318 9 C -0.059 4.059 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.089 4.089 20 C -0.069 4.069 21 C -0.206 4.206 22 C -0.073 4.073 23 N -0.204 5.204 24 C -0.026 4.026 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.213 0.787 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.160 0.840 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.315 -1.474 18.988 20.065 hybrid contribution -1.161 -2.456 0.222 2.726 sum 5.154 -3.929 19.210 20.274 Atomic orbital electron populations 1.21909 0.93691 1.02339 1.02653 1.20703 0.95015 0.97035 0.93208 1.21913 1.02356 0.93759 1.01509 1.22169 0.81691 0.98400 0.96937 1.86818 1.19072 1.81596 1.48182 1.20295 0.90794 0.95912 0.90038 0.93875 1.60631 1.29351 1.38414 1.03370 1.22171 1.00140 0.92955 0.90663 1.19064 0.95423 0.96281 0.90372 1.21156 1.39190 1.00204 0.95397 0.92875 1.24982 0.95388 0.95132 0.98753 1.69966 1.40074 1.17793 1.25387 0.86606 0.78333 0.80847 0.82284 1.20733 1.21163 1.19912 1.20458 0.95696 0.94629 0.98099 1.21085 0.93501 0.97399 0.94963 1.21851 0.95359 0.99438 1.03954 1.22530 0.99609 0.89358 0.95797 1.67704 1.07485 1.30091 1.15148 1.22628 0.89271 0.97518 0.93187 0.92178 0.90966 0.92513 0.91282 0.91273 0.93683 0.93869 0.94114 0.78722 0.83892 0.92529 0.96715 0.96877 0.95583 0.93006 0.86564 0.86069 0.84030 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.00 37.15 0.30 -1.22 16 2 C -0.06 -0.67 0.57 -154.51 -0.09 -0.76 16 3 C -0.14 -1.68 7.04 37.16 0.26 -1.42 16 4 C 0.09 0.81 5.89 37.15 0.22 1.03 16 5 O -0.55 -5.44 8.57 -35.23 -0.30 -5.74 16 6 C 0.14 1.99 1.61 -68.86 -0.11 1.88 16 7 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 8 N -0.68 -11.63 4.91 -107.95 -0.53 -12.16 16 9 C 0.07 1.44 5.45 -3.82 -0.02 1.42 16 10 C 0.03 0.68 5.20 -27.89 -0.14 0.53 16 11 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.09 -1.28 2.83 -104.48 -0.30 -1.58 16 20 C -0.04 -0.57 7.39 -39.28 -0.29 -0.86 16 21 C -0.19 -2.32 10.11 -39.44 -0.40 -2.72 16 22 C 0.08 1.18 11.18 -17.55 -0.20 0.98 16 23 N -0.50 -8.34 10.36 -13.25 -0.14 -8.48 16 24 C 0.13 2.18 8.24 -17.55 -0.14 2.03 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.95 5.18 -51.93 -0.27 0.68 16 29 H 0.07 0.90 7.64 -51.93 -0.40 0.51 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.37 2.22 9.12 45.56 0.42 2.64 16 34 H 0.34 5.51 6.15 -39.29 -0.24 5.27 16 35 H 0.06 1.26 7.95 -51.93 -0.41 0.85 16 36 H 0.01 0.30 7.98 -51.93 -0.41 -0.11 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.16 2.73 6.94 -52.48 -0.36 2.36 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -32.18 338.41 -7.67 -39.84 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.19 Total: 5.13 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.32 Total: -14.29 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.07 Total: -46.93 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.30 Total: -5.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.18 -7.67 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590600271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.823 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds