Wall clock time and date at job start Tue Mar 31 2020 00:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52995 * 109.47373 * 119.99989 * 2 1 3 5 5 O 1.42897 * 109.47513 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47405 * 240.00175 * 2 1 3 7 7 H 1.09004 * 109.46585 * 297.77703 * 6 2 1 8 8 N 1.46902 * 109.47199 * 57.77541 * 6 2 1 9 9 C 1.46905 * 111.00141 * 201.93704 * 8 6 2 10 10 C 1.52998 * 109.47110 * 176.68606 * 9 8 6 11 11 C 1.50697 * 109.47070 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00076 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00042 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00295 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47303 * 89.99606 * 15 13 11 17 17 H 1.48499 * 109.47393 * 209.99873 * 15 13 11 18 18 H 1.48505 * 109.46834 * 330.00117 * 15 13 11 19 19 C 1.50699 * 109.47508 * 177.77795 * 6 2 1 20 20 C 1.38674 * 120.41788 * 99.99648 * 19 6 2 21 21 C 1.38628 * 118.41654 * 180.02562 * 20 19 6 22 22 C 1.38224 * 119.16113 * 0.02562 * 21 20 19 23 23 N 1.31846 * 120.76801 * 359.97438 * 22 21 20 24 24 C 1.31889 * 121.72410 * 359.70906 * 23 22 21 25 25 H 1.09003 * 109.47199 * 293.24748 * 1 2 3 26 26 H 1.09001 * 109.47450 * 53.25232 * 1 2 3 27 27 H 1.08996 * 109.47186 * 173.25381 * 1 2 3 28 28 H 1.09001 * 109.46929 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46791 * 300.00050 * 3 2 1 30 30 H 1.08999 * 109.47048 * 60.00038 * 3 2 1 31 31 H 1.08999 * 109.47074 * 300.00154 * 4 2 1 32 32 H 1.08999 * 109.47310 * 60.00188 * 4 2 1 33 33 H 0.96699 * 114.00249 * 179.97438 * 5 4 2 34 34 H 1.00905 * 110.99518 * 325.88448 * 8 6 2 35 35 H 1.09004 * 109.46455 * 296.67802 * 9 8 6 36 36 H 1.08996 * 109.47142 * 56.67581 * 9 8 6 37 37 H 1.09004 * 109.46806 * 299.98981 * 10 9 8 38 38 H 1.08995 * 109.47257 * 59.99210 * 10 9 8 39 39 H 0.96997 * 120.00203 * 180.02562 * 14 13 11 40 40 H 1.07993 * 120.79157 * 359.97438 * 20 19 6 41 41 H 1.08001 * 120.41785 * 180.02562 * 21 20 19 42 42 H 1.08007 * 119.61457 * 179.97438 * 22 21 20 43 43 H 1.08007 * 119.61873 * 180.31162 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 3.4689 -0.7207 1.2495 6 6 2.0400 -0.7212 -1.2492 7 1 1.7095 -1.7598 -1.2295 8 7 1.5070 -0.0604 -2.4481 9 6 1.5203 -0.9708 -3.6010 10 6 0.8835 -0.2765 -4.8065 11 6 0.8978 -1.2102 -5.9893 12 1 1.3194 -2.1997 -5.8911 13 6 0.3728 -0.8013 -7.1967 14 7 -0.1410 0.4035 -7.3162 15 14 0.3911 -1.9583 -8.6631 16 1 -0.8574 -2.7622 -8.6751 17 1 0.4826 -1.1675 -9.9167 18 1 1.5628 -2.8653 -8.5634 19 6 3.5460 -0.6737 -1.2771 20 6 4.2907 -1.7692 -0.8670 21 6 5.6735 -1.6801 -0.9092 22 6 6.2597 -0.5104 -1.3550 23 7 5.5198 0.5117 -1.7374 24 6 4.2021 0.4603 -1.7165 25 1 -0.3634 0.4056 0.9442 26 1 -0.3634 0.6148 -0.8234 27 1 -0.3633 -1.0205 -0.1207 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -0.2074 2.1392 32 1 1.6767 -1.7489 1.2492 33 1 3.8623 -1.1620 2.0148 34 1 0.5785 0.2977 -2.2809 35 1 2.5493 -1.2406 -3.8388 36 1 0.9552 -1.8710 -3.3596 37 1 -0.1455 -0.0067 -4.5686 38 1 1.4487 0.6237 -5.0477 39 1 -0.5107 0.6910 -8.1656 40 1 3.8051 -2.6700 -0.5221 41 1 6.2850 -2.5141 -0.5977 42 1 7.3364 -0.4328 -1.3906 43 1 3.6293 1.3160 -2.0421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590600271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:26 Heat of formation + Delta-G solvation = -43.698753 kcal Electronic energy + Delta-G solvation = -22624.244396 eV Core-core repulsion = 19475.138318 eV Total energy + Delta-G solvation = -3149.106078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44733 -39.34279 -37.26293 -35.71045 -34.34057 -33.28773 -32.18015 -30.67366 -28.13335 -27.34716 -26.78726 -25.12635 -24.10073 -22.94808 -22.21794 -19.77648 -18.52989 -18.17641 -17.72755 -17.33041 -16.91305 -16.50835 -15.96508 -15.77165 -15.62277 -14.86941 -14.71916 -14.47051 -14.25103 -14.03806 -13.89648 -13.76607 -13.37934 -13.26633 -12.93757 -12.90912 -12.81923 -12.67464 -12.41604 -12.07620 -11.86037 -11.62037 -11.54674 -11.37283 -11.20277 -10.91208 -10.57240 -10.20184 -10.16205 -9.48347 -9.28179 -8.20973 -6.32269 0.48543 0.67603 1.38618 1.40576 1.51500 2.39513 3.11784 3.12536 3.26116 3.44895 3.70105 3.87015 3.93146 4.09859 4.20020 4.28402 4.38766 4.43587 4.52331 4.55752 4.63297 4.63944 4.68420 4.75479 4.82317 4.93190 5.04230 5.05175 5.08014 5.14522 5.19887 5.36159 5.41521 5.42680 5.53496 5.57881 5.68402 5.79846 6.05522 6.15651 6.29140 6.56817 6.84543 7.03312 7.31648 7.36892 8.91040 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.004772 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.566379 B = 5865.643638 C = 6678.673789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.132 4.132 4 C 0.092 3.908 5 O -0.570 6.570 6 C 0.143 3.857 7 H 0.047 0.953 8 N -0.688 5.688 9 C 0.093 3.907 10 C 0.034 3.966 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.965 3.035 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.091 4.091 20 C -0.044 4.044 21 C -0.174 4.174 22 C 0.070 3.930 23 N -0.528 5.528 24 C 0.107 3.893 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.384 0.616 34 H 0.344 0.656 35 H 0.042 0.958 36 H 0.021 0.979 37 H -0.005 1.005 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -5.369 21.577 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.057 4.057 3 C -0.189 4.189 4 C 0.013 3.987 5 O -0.378 6.378 6 C 0.032 3.968 7 H 0.064 0.936 8 N -0.321 5.321 9 C -0.036 4.036 10 C -0.003 4.003 11 C -0.583 4.583 12 H 0.075 0.925 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.789 3.211 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.093 4.093 20 C -0.070 4.070 21 C -0.194 4.194 22 C -0.087 4.087 23 N -0.238 5.238 24 C -0.049 4.049 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.166 0.834 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.014 0.986 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.158 0.842 41 H 0.176 0.824 42 H 0.183 0.817 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.697 -3.863 20.448 21.861 hybrid contribution -1.218 -1.675 -0.166 2.078 sum 5.479 -5.538 20.282 21.727 Atomic orbital electron populations 1.21890 0.92744 1.02509 1.03254 1.20707 0.95740 0.96207 0.92999 1.21817 1.01139 0.94639 1.01292 1.22103 0.81638 0.98956 0.95965 1.86769 1.19344 1.82083 1.49555 1.20382 0.90567 0.96055 0.89773 0.93556 1.60482 1.29839 1.37983 1.03819 1.21688 0.98490 0.93032 0.90383 1.18893 0.94171 0.95022 0.92233 1.21582 1.39362 1.00744 0.96623 0.92506 1.25935 0.94733 0.96832 1.02014 1.70099 1.40780 1.19735 1.26384 0.85458 0.78932 0.78633 0.78082 1.19415 1.20711 1.19042 1.20496 0.95932 0.94672 0.98215 1.21381 0.93969 0.97414 0.94254 1.22211 0.95405 0.99692 1.02058 1.23035 1.00707 0.89405 0.95562 1.67621 1.07765 1.31921 1.16450 1.22387 0.89556 0.97857 0.95129 0.90035 0.92418 0.92044 0.93038 0.93193 0.92103 0.92181 0.92762 0.76696 0.83411 0.93985 0.96127 0.98616 0.99072 0.92735 0.84243 0.82444 0.81654 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.00 71.98 0.58 -2.20 16 2 C -0.06 -1.21 0.57 -52.18 -0.03 -1.24 16 3 C -0.13 -3.21 7.04 71.98 0.51 -2.70 16 4 C 0.09 1.46 5.89 71.98 0.42 1.88 16 5 O -0.57 -9.82 8.57 -148.98 -1.28 -11.10 16 6 C 0.14 3.96 1.61 44.17 0.07 4.04 16 7 H 0.05 1.28 7.69 -2.39 -0.02 1.26 16 8 N -0.69 -24.10 4.91 -495.43 -2.43 -26.53 16 9 C 0.09 4.00 5.45 86.30 0.47 4.47 16 10 C 0.03 1.86 5.20 29.85 0.16 2.01 16 11 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.00 0.17 5.46 84.65 0.46 0.64 16 14 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 15 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 C -0.09 -2.65 2.83 -19.77 -0.06 -2.71 16 20 C -0.04 -1.06 7.39 22.47 0.17 -0.89 16 21 C -0.17 -3.87 10.11 22.36 0.23 -3.64 16 22 C 0.07 1.87 11.18 84.69 0.95 2.82 16 23 N -0.53 -18.08 10.36 -195.84 -2.03 -20.10 16 24 C 0.11 3.68 8.24 84.67 0.70 4.37 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.26 6.47 -2.39 -0.02 1.24 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.45 5.18 -2.39 -0.01 1.44 16 29 H 0.05 1.38 7.64 -2.39 -0.02 1.36 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.38 3.47 9.12 -74.06 -0.68 2.79 16 34 H 0.34 11.57 6.15 -89.69 -0.55 11.02 16 35 H 0.04 1.92 7.95 -2.38 -0.02 1.90 16 36 H 0.02 0.86 7.98 -2.39 -0.02 0.84 16 37 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 41 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 42 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 43 H 0.13 5.05 6.94 -2.91 -0.02 5.03 16 Total: -1.00 -71.38 338.41 1.19 -70.18 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -0.23 Total: 22.41 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.85 Total: -24.68 kcal Atomic # 7 Polarization: -99.67 SS G_CDS: -4.18 Total: -103.85 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.28 Total: -11.10 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -71.38 1.19 -70.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590600271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.484 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds